View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_low_5 (Length: 485)
Name: NF19490_low_5
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 13210790 - 13211245
Alignment:
| Q |
11 |
cacagaaaaccacacaaaacaaacaaaccatgacattctccacgttcctaaacttcctattcccacccccaccatcactattcatcaccaccatgtccgt |
110 |
Q |
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| T |
13210790 |
cacagaaaaccacacaaaacaaacaaaccatgacattctccacgttcctaaacttcctattcccacccccaccttcactattcatcaccaccatgtctgt |
13210889 |
T |
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| Q |
111 |
cataacatgtgtctcacttgcaaacgcaggtatcaatgaaattagagggaagcatttaaactattccaaattctggaacgtagataataacaatggtgat |
210 |
Q |
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| T |
13210890 |
cataacatgtgtctcccttgcaaacgcaggtatcaatgaagttagagggaagcatttaaactattccaaattctggaacgtagaaaataacaatggtgat |
13210989 |
T |
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| Q |
211 |
aagaagaagaagaagatgataaaattgtcgagtaaaagtggtatgttattgttatatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttc |
310 |
Q |
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| T |
13210990 |
aagaagaagaagaagatgataaaattgtcgagtaaaagtggtatgttattgttgtatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttc |
13211089 |
T |
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| Q |
311 |
ctgatgatggttttagatctttggttcttcaaggtgctgttacgtttcatttcttcaagagagtttttgaggtaatgtatagcataaggtttaatgatac |
410 |
Q |
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| T |
13211090 |
ctgatgatggttttagatctttggttcttcaaggtgctgttacgtttcatttcttcaagagagtttttgaggtaatgtatagcataaggtttaatgatac |
13211189 |
T |
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| Q |
411 |
aagattaattgctcttttgtgttcgaaatttttatgttaaaatgtaatgttgtgaa |
466 |
Q |
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| T |
13211190 |
aagattaattgcacttttgtgttcgaaatttttatgttaaaatgtaatgttgtgaa |
13211245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 386
Target Start/End: Original strand, 13184900 - 13185037
Alignment:
| Q |
249 |
tggtatgttattgttatatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttcctgatgatggttttagatctttggttcttcaaggtgct |
348 |
Q |
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| T |
13184900 |
tggtatgttgttgctctatactcctgcttttctagctggtgcagtgtccttttggatctttcctaatgaaggtttaagatctacaatccttcaaggtgct |
13184999 |
T |
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| Q |
349 |
gttacgtttcatttcttcaagagagtttttgaggtaat |
386 |
Q |
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| T |
13185000 |
ttgacccttcactacttcaagagagtctttgaggtaat |
13185037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 386
Target Start/End: Original strand, 13157125 - 13157262
Alignment:
| Q |
249 |
tggtatgttattgttatatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttcctgatgatggttttagatctttggttcttcaaggtgct |
348 |
Q |
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| T |
13157125 |
tggtatgttgttgctctatactcctgcttttctagctggtgcagtgtccttttggatctttcctaatgaaggtttaagatctacaatccttcaaggtgct |
13157224 |
T |
|
| Q |
349 |
gttacgtttcatttcttcaagagagtttttgaggtaat |
386 |
Q |
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| T |
13157225 |
ttgacccttcactacttcaagagggtctttgaggtaat |
13157262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 386
Target Start/End: Original strand, 13161981 - 13162118
Alignment:
| Q |
249 |
tggtatgttattgttatatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttcctgatgatggttttagatctttggttcttcaaggtgct |
348 |
Q |
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| T |
13161981 |
tggtatgttgttgctctatactcctgcttttctagctggtgcagtgtccttttggatctttcctaatgaaggtttaagatctacaatccttcaaggtgct |
13162080 |
T |
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| Q |
349 |
gttacgtttcatttcttcaagagagtttttgaggtaat |
386 |
Q |
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| T |
13162081 |
ttgacccttcactacttcaagagggtctttgaggtaat |
13162118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 13184804 - 13184860
Alignment:
| Q |
147 |
tgaaattagagggaagcatttaaactattccaaattctggaacgtagataataacaa |
203 |
Q |
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| T |
13184804 |
tgaaattagaggaaagcatttgaattattccaaattttggaatgcaaataataacaa |
13184860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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