View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19490_low_6 (Length: 462)

Name: NF19490_low_6
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19490_low_6
NF19490_low_6
[»] chr3 (42 HSPs)
chr3 (225-446)||(28904916-28905137)
chr3 (15-166)||(28904711-28904857)
chr3 (299-409)||(54484737-54484848)
chr3 (250-393)||(29366736-29366881)
chr3 (240-409)||(40272812-40272982)
chr3 (240-407)||(26573115-26573282)
chr3 (240-409)||(34420643-34420813)
chr3 (240-390)||(46421054-46421207)
chr3 (240-409)||(13730602-13730774)
chr3 (250-374)||(22122952-22123074)
chr3 (240-408)||(22609754-22609921)
chr3 (242-409)||(26869696-26869863)
chr3 (253-409)||(13628790-13628948)
chr3 (82-134)||(28927692-28927744)
chr3 (240-409)||(53996565-53996735)
chr3 (240-393)||(7696908-7697055)
chr3 (251-410)||(39203515-39203672)
chr3 (240-390)||(8247706-8247859)
chr3 (246-389)||(30928167-30928310)
chr3 (240-348)||(45620890-45620998)
chr3 (240-409)||(1217077-1217245)
chr3 (305-390)||(9276317-9276401)
chr3 (299-393)||(6411838-6411931)
chr3 (240-374)||(12914070-12914205)
chr3 (299-410)||(45786213-45786326)
chr3 (319-409)||(15797286-15797377)
chr3 (319-409)||(34771364-34771455)
chr3 (233-270)||(829581-829618)
chr3 (305-409)||(25517170-25517275)
chr3 (352-409)||(50624953-50625010)
chr3 (240-409)||(25944457-25944627)
chr3 (299-373)||(47624089-47624162)
chr3 (240-276)||(55400986-55401022)
chr3 (240-377)||(44403587-44403725)
chr3 (240-317)||(10870043-10870121)
chr3 (240-294)||(53062026-53062080)
chr3 (299-409)||(31592896-31593004)
chr3 (305-350)||(33235584-33235629)
chr3 (325-409)||(52926219-52926304)
chr3 (353-409)||(516513-516569)
chr3 (299-410)||(10795422-10795535)
chr3 (240-272)||(35417904-35417936)
[»] chr1 (48 HSPs)
chr1 (250-409)||(46247953-46248112)
chr1 (240-372)||(18724582-18724714)
chr1 (250-372)||(41319843-41319965)
chr1 (250-406)||(46991803-46991959)
chr1 (240-393)||(14617026-14617180)
chr1 (240-409)||(18944631-18944804)
chr1 (247-378)||(35117797-35117930)
chr1 (240-409)||(34725098-34725266)
chr1 (250-393)||(23768336-23768479)
chr1 (250-393)||(27474280-27474422)
chr1 (319-410)||(4349705-4349797)
chr1 (254-409)||(8197046-8197201)
chr1 (240-393)||(19701559-19701713)
chr1 (240-409)||(6983811-6983978)
chr1 (307-409)||(20999850-20999952)
chr1 (240-393)||(30395742-30395898)
chr1 (239-374)||(47214498-47214632)
chr1 (240-406)||(52910206-52910379)
chr1 (240-377)||(20036209-20036347)
chr1 (240-338)||(22327088-22327185)
chr1 (240-374)||(32632592-32632726)
chr1 (250-350)||(4430086-4430185)
chr1 (240-409)||(10668208-10668385)
chr1 (250-409)||(20004090-20004251)
chr1 (250-393)||(27201646-27201791)
chr1 (299-409)||(35005171-35005283)
chr1 (240-317)||(45812627-45812705)
chr1 (352-393)||(42304223-42304264)
chr1 (240-377)||(18741989-18742131)
chr1 (240-280)||(28894660-28894700)
chr1 (299-409)||(31382214-31382323)
chr1 (240-409)||(50811928-50812098)
chr1 (233-272)||(34679356-34679395)
chr1 (251-374)||(12126872-12126993)
chr1 (324-377)||(15505636-15505690)
chr1 (308-377)||(19932785-19932856)
chr1 (240-294)||(25554837-25554891)
chr1 (305-377)||(30682868-30682938)
chr1 (240-270)||(31442516-31442546)
chr1 (299-374)||(35253222-35253295)
chr1 (240-349)||(2435848-2435956)
chr1 (250-319)||(14988009-14988078)
chr1 (240-374)||(22930104-22930237)
chr1 (251-409)||(38478282-38478438)
chr1 (352-409)||(50606504-50606561)
chr1 (319-406)||(10378738-10378826)
chr1 (240-272)||(43207478-43207510)
chr1 (335-406)||(45402179-45402251)
[»] chr7 (33 HSPs)
chr7 (240-410)||(23419673-23419843)
chr7 (240-409)||(32758226-32758394)
chr7 (242-408)||(11617589-11617756)
chr7 (240-409)||(42798634-42798804)
chr7 (240-377)||(35334848-35334984)
chr7 (299-409)||(7879663-7879773)
chr7 (240-410)||(2541018-2541190)
chr7 (240-409)||(21172009-21172177)
chr7 (250-409)||(42805500-42805661)
chr7 (240-377)||(19266416-19266553)
chr7 (240-389)||(28362165-28362314)
chr7 (305-377)||(1408488-1408560)
chr7 (240-409)||(19265781-19265948)
chr7 (240-410)||(48735121-48735291)
chr7 (251-374)||(10693108-10693229)
chr7 (250-373)||(33871946-33872068)
chr7 (250-364)||(42476849-42476961)
chr7 (240-374)||(19426925-19427059)
chr7 (256-409)||(42391100-42391251)
chr7 (240-319)||(47077943-47078023)
chr7 (250-409)||(34626208-34626366)
chr7 (240-272)||(3469316-3469348)
chr7 (250-354)||(22699026-22699129)
chr7 (240-374)||(27629599-27629734)
chr7 (240-377)||(40463842-40463979)
chr7 (240-377)||(13805068-13805204)
chr7 (240-362)||(48123531-48123653)
chr7 (299-408)||(18747511-18747621)
chr7 (240-280)||(14732951-14732992)
chr7 (299-382)||(15108424-15108506)
chr7 (305-377)||(23231588-23231660)
chr7 (299-390)||(38604552-38604642)
chr7 (250-409)||(43557448-43557610)
[»] chr4 (46 HSPs)
chr4 (234-379)||(47441560-47441705)
chr4 (239-409)||(11054148-11054317)
chr4 (250-409)||(47528530-47528687)
chr4 (250-377)||(40915805-40915931)
chr4 (240-377)||(5648224-5648361)
chr4 (240-408)||(6430627-6430795)
chr4 (240-382)||(5306691-5306833)
chr4 (245-409)||(35567141-35567305)
chr4 (233-374)||(17043429-17043567)
chr4 (240-393)||(30639345-30639498)
chr4 (240-409)||(16408601-16408773)
chr4 (240-409)||(16911527-16911699)
chr4 (299-409)||(25629074-25629184)
chr4 (240-370)||(48598864-48598993)
chr4 (240-409)||(20224949-20225117)
chr4 (299-409)||(20639658-20639769)
chr4 (250-410)||(44363129-44363291)
chr4 (299-409)||(51865038-51865148)
chr4 (239-393)||(54730213-54730371)
chr4 (352-409)||(33836487-33836544)
chr4 (240-409)||(23501758-23501924)
chr4 (240-393)||(30581481-30581636)
chr4 (240-292)||(54966987-54967039)
chr4 (352-410)||(30690175-30690233)
chr4 (352-410)||(38755907-38755965)
chr4 (299-409)||(9832313-9832421)
chr4 (233-393)||(19027807-19027967)
chr4 (240-393)||(20908652-20908807)
chr4 (240-349)||(25343153-25343261)
chr4 (352-409)||(47482850-47482907)
chr4 (299-377)||(7909313-7909390)
chr4 (240-406)||(21646929-21647098)
chr4 (299-374)||(47443982-47444057)
chr4 (352-395)||(14983912-14983955)
chr4 (355-410)||(40553936-40553991)
chr4 (299-409)||(54175089-54175200)
chr4 (352-410)||(11394930-11394988)
chr4 (352-410)||(11404657-11404715)
chr4 (245-291)||(35894572-35894618)
chr4 (305-389)||(3580860-3580944)
chr4 (319-407)||(29207900-29207989)
chr4 (352-409)||(32484311-32484368)
chr4 (241-317)||(49938682-49938759)
chr4 (240-272)||(487272-487304)
chr4 (240-272)||(42164285-42164317)
chr4 (299-377)||(49796823-49796900)
[»] chr2 (32 HSPs)
chr2 (240-406)||(4516354-4516520)
chr2 (250-409)||(24200623-24200784)
chr2 (240-409)||(8455316-8455486)
chr2 (240-409)||(10543663-10543835)
chr2 (240-377)||(12023951-12024088)
chr2 (240-410)||(14530283-14530456)
chr2 (240-409)||(9671145-9671314)
chr2 (305-409)||(10546193-10546298)
chr2 (299-393)||(14444754-14444847)
chr2 (240-393)||(11514401-11514554)
chr2 (240-377)||(25079749-25079888)
chr2 (240-389)||(21377093-21377242)
chr2 (305-393)||(17896290-17896379)
chr2 (240-409)||(21779261-21779429)
chr2 (250-409)||(25249738-25249896)
chr2 (299-409)||(40762234-40762344)
chr2 (230-272)||(35017773-35017815)
chr2 (252-372)||(5450263-5450384)
chr2 (305-373)||(32781324-32781392)
chr2 (352-409)||(34766333-34766390)
chr2 (305-409)||(39914306-39914410)
chr2 (354-410)||(8575975-8576031)
chr2 (240-409)||(27573586-27573755)
chr2 (299-409)||(36871518-36871626)
chr2 (250-410)||(23397742-23397900)
chr2 (352-395)||(24059010-24059053)
chr2 (308-377)||(24890444-24890514)
chr2 (250-390)||(26684639-26684781)
chr2 (240-409)||(44643488-44643658)
chr2 (324-408)||(13245096-13245181)
chr2 (240-277)||(35010513-35010550)
chr2 (352-408)||(40579750-40579806)
[»] chr8 (30 HSPs)
chr8 (250-409)||(28817626-28817785)
chr8 (240-409)||(35261644-35261814)
chr8 (240-409)||(30454097-30454265)
chr8 (250-377)||(36720772-36720899)
chr8 (251-389)||(24365079-24365218)
chr8 (240-409)||(39460994-39461166)
chr8 (240-374)||(12670285-12670418)
chr8 (305-409)||(12625920-12626025)
chr8 (250-374)||(2626495-2626622)
chr8 (242-410)||(13160669-13160837)
chr8 (240-393)||(44530114-44530268)
chr8 (240-393)||(44781520-44781675)
chr8 (240-374)||(20869535-20869666)
chr8 (299-377)||(5135321-5135399)
chr8 (250-377)||(20284101-20284232)
chr8 (299-407)||(29877119-29877227)
chr8 (240-410)||(17823541-17823712)
chr8 (240-393)||(18164776-18164929)
chr8 (250-408)||(45071241-45071398)
chr8 (240-409)||(6760787-6760959)
chr8 (250-377)||(21070729-21070861)
chr8 (299-374)||(19729367-19729440)
chr8 (250-348)||(26954108-26954206)
chr8 (299-409)||(20869948-20870060)
chr8 (240-393)||(29521701-29521855)
chr8 (240-408)||(42083699-42083868)
chr8 (305-393)||(5689662-5689750)
chr8 (305-409)||(10857859-10857964)
chr8 (250-409)||(25250498-25250659)
chr8 (353-409)||(40444845-40444901)
[»] chr5 (27 HSPs)
chr5 (240-409)||(38879546-38879718)
chr5 (240-409)||(43334167-43334339)
chr5 (250-390)||(27328728-27328870)
chr5 (240-409)||(3771307-3771474)
chr5 (240-409)||(24448855-24449025)
chr5 (299-409)||(29334420-29334531)
chr5 (240-409)||(41014284-41014453)
chr5 (240-377)||(19142975-19143111)
chr5 (240-410)||(1565396-1565567)
chr5 (240-374)||(8170019-8170152)
chr5 (240-317)||(209019-209096)
chr5 (334-409)||(16957373-16957449)
chr5 (239-349)||(22187249-22187359)
chr5 (261-409)||(32703411-32703557)
chr5 (240-384)||(39301089-39301234)
chr5 (240-409)||(35710278-35710446)
chr5 (299-391)||(43574631-43574723)
chr5 (299-410)||(16880646-16880757)
chr5 (240-272)||(23974746-23974778)
chr5 (233-272)||(31694245-31694284)
chr5 (240-271)||(39079904-39079935)
chr5 (299-406)||(7368423-7368528)
chr5 (355-409)||(19093894-19093948)
chr5 (352-410)||(30877563-30877621)
chr5 (299-410)||(7097759-7097869)
chr5 (299-371)||(20135629-20135703)
chr5 (352-393)||(25622538-25622579)
[»] chr6 (15 HSPs)
chr6 (240-409)||(1354757-1354925)
chr6 (240-409)||(1346929-1347097)
chr6 (240-409)||(12221914-12222087)
chr6 (257-409)||(29355855-29356009)
chr6 (240-377)||(3815109-3815247)
chr6 (249-377)||(9161098-9161227)
chr6 (251-393)||(32728173-32728314)
chr6 (352-409)||(12885991-12886048)
chr6 (240-377)||(13905012-13905148)
chr6 (299-409)||(26097185-26097293)
chr6 (352-410)||(10734904-10734962)
chr6 (352-409)||(6808473-6808530)
chr6 (250-351)||(20400643-20400743)
chr6 (299-409)||(25557750-25557858)
chr6 (299-371)||(6024258-6024332)
[»] scaffold0258 (1 HSPs)
scaffold0258 (240-409)||(13024-13193)
[»] scaffold0187 (2 HSPs)
scaffold0187 (250-374)||(10085-10207)
scaffold0187 (250-374)||(20413-20535)
[»] scaffold0168 (1 HSPs)
scaffold0168 (240-409)||(30544-30712)
[»] scaffold0057 (2 HSPs)
scaffold0057 (250-409)||(46807-46966)
scaffold0057 (240-393)||(24788-24937)
[»] scaffold0049 (1 HSPs)
scaffold0049 (250-410)||(58953-59115)
[»] scaffold1176 (1 HSPs)
scaffold1176 (250-393)||(1603-1744)
[»] scaffold0311 (1 HSPs)
scaffold0311 (305-393)||(10841-10929)
[»] scaffold0015 (1 HSPs)
scaffold0015 (299-409)||(48634-48742)
[»] scaffold0954 (1 HSPs)
scaffold0954 (305-377)||(3575-3647)
[»] scaffold0018 (1 HSPs)
scaffold0018 (302-393)||(72883-72974)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 225 - 446
Target Start/End: Original strand, 28904916 - 28905137
Alignment:
Q  225 tttgcagagggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaag 324  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  28904916 tttgcagagggagttttggtgcaacggtaaagttgttgtcatgtgactaaaaagtcacatgtttaagtccagggaacagtctcttgtgtaaaataacaag 28905015  T
Q  325 gtaagactgtgtacattacaccaaatatgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctttagtaaagcaagtatt 424  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28905016 gtaagactgtgtacattacaccaaatatgggaccctttcccggaccctgcgtaagcgggaactttagtgtaacgggctgccctttagtaaagcaagtatt 28905115  T
Q  425 gtaggagattatccctaaaaac 446  Q
    ||||||||||||||||||||||    
T  28905116 gtaggagattatccctaaaaac 28905137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 28904711 - 28904857
Alignment:
Q  15 cacagacacggacaactaatgcgacactgacatggaaacataatcacatgtgttgattttggacgcaccttccatcacaagtgtcagtgctactaacaat 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  28904711 cacagacacggacaactgatgcgacactgacatggaaacataatcacatgtgttgattttggacacgccttccatcacaagtgtcagtgctactaacaat 28904810  T
Q  115 aaataaatgttactcaatcagtacagtatgaacacactatttagtggggaac 166  Q
    ||||||||||||||||||     |||||||||||||| ||||||||||||||    
T  28904811 aaataaatgttactcaat-----cagtatgaacacacaatttagtggggaac 28904857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 54484737 - 54484848
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |    
T  54484737 aacagcctcttgtgtaaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcacc 54484836  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  54484837 gggttgcccttt 54484848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 393
Target Start/End: Complemental strand, 29366881 - 29366736
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||||||| ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||| ||||| ||||||||     
T  29366881 ggtaaagttgttgtcatgtgactaaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaaggctgcgtacaatacaccaat 29366783  T
Q  350 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
     |   |||||||||||||||||||||||||| |||||| ||||||||    
T  29366782 aatggtgggaccccttcccggaccctgcgtatgtgggagctttagtg 29366736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 40272982 - 40272812
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || |||    ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||| ||||    
T  40272982 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgcgtac 40272884  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  40272883 aatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 40272812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 407
Target Start/End: Original strand, 26573115 - 26573282
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |  ||| |||||| |  ||||| ||| ||||||||| |||| |||||| ||| |||||    
T  26573115 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagcctcctgtgtaaaa-aacagggtaaggctgcgtaca 26573213  T
Q  340 ttacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccct 407  Q
     |||||||| |  ||||||||| |||||||||||||||| | | || |||||||| | | |||||||||    
T  26573214 atacaccaattggtgggaccccatcccggaccctgcgtatgcgtgagctttagtgcaccaggctgccct 26573282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 34420813 - 34420643
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||| ||||||||||||||| |||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||     
T  34420813 ttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacc 34420715  T
Q  340 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |||||||||    ||||||||||||||||||| |||||| |||||| |||||||| |   |||||||||||    
T  34420714 atacaccaaaatggtgggaccccttcccggaccttgcgtatgtgggagctttagtgcacatggctgcccttt 34420643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 390
Target Start/End: Complemental strand, 46421207 - 46421054
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  46421207 ttggcgcaactggtaaagttgttgtcatgtgacttaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 46421109  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaacttta 390  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| |||||    
T  46421108 aatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagcttta 46421054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 13730774 - 13730602
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||||||||    
T  13730774 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgtgtac 13730676  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||  |   |||||||||||||||||||| || || | |||| |||||||| | |||| ||||||||    
T  13730675 aatacaccaataatggtgggaccccttcccggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 13730602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 22123074 - 22122952
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||| |||||||||||||||| ||| |||||  ||| |||||| |  |||||||||||||||||   |||| |||||| ||| ||||| |||||||||    
T  22123074 ggtaaatttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacagtctcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaa 22122978  T
Q  350 t-atgggaccccttcccggaccctgc 374  Q
    |  |||||||||||||||||||||||    
T  22122977 tggtgggaccccttcccggaccctgc 22122952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 408
Target Start/End: Original strand, 22609754 - 22609921
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||||||||||  || ||  |  ||| |||||  |  ||||| |||||||||||||  ||| |||||| ||| |||||    
T  22609754 ttggcgcaacggtaaagttgttgtcatgtgactgtaaggtaacgggttcaagtcttggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtaca 22609851  T
Q  340 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 408  Q
     ||||||||||  ||||||||||||||||||| |||||| | |||| ||| |||| | |||| |||||||    
T  22609852 atacaccaaatggtgggaccccttcccggaccttgcgtatgcgggagcttcagtgcaccgggttgccctt 22609921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 409
Target Start/End: Original strand, 26869696 - 26869863
Alignment:
Q  242 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 340  Q
    |||||||| ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||| |||| |||||||  |||| |||||| ||| |||||     
T  26869696 ggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctctggtgtaaa--aacagggtaaggctgcgtacaa 26869793  T
Q  341 tacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    ||||||||||  ||||||||||| ||||||| |||||| | |||| |||| ||| | |||| ||||||||    
T  26869794 tacaccaaatggtgggaccccttgccggaccatgcgtatgcgggagctttggtgcaccgggttgcccttt 26869863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 409
Target Start/End: Complemental strand, 13628948 - 13628790
Alignment:
Q  253 aaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata- 351  Q
    |||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||| | |||| |||||| ||| ||||| ||||||||  |     
T  13628948 aaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaga-aacagggtaaggctgcgtacaatacaccaataat 13628850  T
Q  352 --tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
      |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  13628849 ggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 13628790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 28927692 - 28927744
Alignment:
Q  82 ccttccatcacaagtgtcagtgctactaacaataaataaatgttactcaatca 134  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  28927692 ccttccatcacaggtgtcagggctactaacaataaataaatgttactcaatca 28927744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 53996735 - 53996565
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||| |||||||| |||||||||| ||||| ||| ||| | |||| |||||  |  ||||  ||||||||||||| |||| |||||| |||  ||||    
T  53996735 ttggcgctacggtaaatttgttgtcatttgactgaaaggtcacgtgttcaagtcgtggaaacaacctcttgtgtaaaa-aacagggtaaggctgcttaca 53996637  T
Q  340 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |||||||||    |||||||||||||| ||| ||||||| |||||| |||||||| | |||||||||||||    
T  53996636 atacaccaaaatggtgggaccccttccctgacactgcgtatgtgggagctttagtgcaccgggctgcccttt 53996565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 7697055 - 7696908
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |  ||| |||||| |  |||||||||||||||||   |||| |||||| ||| ||||    
T  7697055 ttggcgcaactggtaaagttgttgtcatgtgactaaaaggtcacgggttcaagtcctggaaacagtctcttgtgtaa---aacagggtaaggctgcgtac 7696959  T
Q  339 attacaccaaatatgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||||||||    | ||||||||||||| |||| || |||||| || |||||    
T  7696958 aatacaccaaat----ggccccttcccggacactgcatatgtgggagctctagtg 7696908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 410
Target Start/End: Original strand, 39203515 - 39203672
Alignment:
Q  251 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 350  Q
    |||||||||||||||||||||| ||| ||| || ||| ||||||    ||||| |||||||||||||   || ||||||  || ||||| ||||||||||    
T  39203515 gtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtccttgaaacagcctcttgtgtaaaa---cagggtaaggttgcgtacaatacaccaaat 39203611  T
Q  351 a-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
      ||||||||||||||||||| ||| || | |||| |||||||| | |||| |||||||||    
T  39203612 ggtgggaccccttcccggaccttgcatatgcgggagctttagtgcaccgggttgcccttta 39203672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 390
Target Start/End: Complemental strand, 8247859 - 8247706
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| ||||||  || ||||    
T  8247859 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggttgcgtac 8247761  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaacttta 390  Q
    | ||||||||  |   |||||| ||||||||||||||||||| | |||| |||||    
T  8247760 aatacaccaataatggtgggactccttcccggaccctgcgtatgcgggagcttta 8247706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 389
Target Start/End: Complemental strand, 30928310 - 30928167
Alignment:
Q  246 caacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacac 345  Q
    ||||||| ||||| ||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||||||||||  |||||| | |||||    
T  30928310 caacggtcaagttcttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacaaggtaaggttgtgtaaaatacac 30928212  T
Q  346 caaatat-gggaccccttcccggaccctgcgtaagtgggaacttt 389  Q
    ||| |   |||||||||||||||||||||| || |||||| ||||    
T  30928211 caattggcgggaccccttcccggaccctgcatatgtgggagcttt 30928167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 45620998 - 45620890
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |  ||| |||| | |  ||||| ||||||||||||| |||| |||||| ||| |||||    
T  45620998 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagttctggaaacagcctcttgtgtaaaaaaacagggtaaggctgcgtaca 45620899  T
Q  340 ttacaccaa 348  Q
     ||||||||    
T  45620898 atacaccaa 45620890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 1217077 - 1217245
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||| ||||||| ||| ||| ||| |  ||| |||||| |  ||||| |||||||||||||   || |||||| ||| ||||    
T  1217077 ttggcgcaactggtaaagttgtagtcatgtcactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgtac 1217173  T
Q  339 attacaccaaatat-gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||   |||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  1217174 aatacaccaaatggcgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 1217245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 9276317 - 9276401
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgggaccccttcccggaccctgcgtaagtgggaacttta 390  Q
    ||||||||||||| |||| |||||| ||| ||||| ||||||||||   |||||| ||||||||||||||||| | ||||||||||    
T  9276317 ctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtggaccctttcccggaccctgcgtatgcgggaacttta 9276401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 393
Target Start/End: Complemental strand, 6411931 - 6411838
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||| |||||||||| ||||||||||||||| |||| |||||| | |||| ||||||||    
T  6411931 aacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaatgatgggaccccttcccagaccttgcgtatgcgggagctttagtg 6411838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 12914205 - 12914070
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||| |||||||  ||| ||| || ||| |||||| |  ||||| ||||||||||||| |||| |||||| | | ||||    
T  12914205 ttggcgcaactggtaaagttgttgtaatgtgaccgaaaggtcacaagttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggcggcgtac 12914107  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgc 374  Q
    | ||||||||||  || ||||||||||| ||||||||    
T  12914106 aatacaccaaatggtgagaccccttcccagaccctgc 12914070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 45786326 - 45786213
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgta 395  Q
    ||||| ||||||||||||| |||| |||||| ||| ||||| ||||||||| ||||   ||||||||||||||||||||| | |  ||| |||||||| |    
T  45786326 aacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgaatgctggagctttagtgca 45786228  T
Q  396 acgggctgcccttta 410  Q
     |||| |||||||||    
T  45786227 ccgggttgcccttta 45786213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 409
Target Start/End: Original strand, 15797286 - 15797377
Alignment:
Q  319 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || |||||| || ||||| | |||| ||||||||    
T  15797286 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgtgggagctctagtgcaccgggttgcccttt 15797377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 34771455 - 34771364
Alignment:
Q  319 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||||||||||||    
T  34771455 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggctgcccttt 34771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 829618 - 829581
Alignment:
Q  233 gggagttttggcgcaacggtaaagttgttgtcatgtga 270  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  829618 gggagttttggcgcaacggtaaagttgttgtcacgtga 829581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 409
Target Start/End: Complemental strand, 25517275 - 25517170
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 403  Q
    ||||||||||||| |||||| || | ||| ||||| ||||| ||||  ||||||||||||||||| |||||||| |  ||| |||||||| | |||| ||    
T  25517275 ctcttgtgtaaaaaaacaagatatggctgcgtacaatacacaaaatggtgggaccccttcccggatcctgcgtatgctggagctttagtgcaccgggttg 25517176  T
Q  404 cccttt 409  Q
    ||||||    
T  25517175 cccttt 25517170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 50625010 - 50624953
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||| |||||| || |||||||||||||||| |||||||| | |||||||||||||    
T  50625010 tgggacgccttcctgggccctgcgtaagtgggagctttagtgcaccgggctgcccttt 50624953  T

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Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 25944457 - 25944627
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||| ||||||||||||||| |||||| ||| |||    ||| |||||| |  ||| | |||| |||||||| |||  || ||| ||| |||||    
T  25944457 ttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcatgggttcaagtcctggaaaccgcctctcgtgtaaaa-aactgggcaaggctgagtaca 25944555  T
Q  340 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |||||||||    |||||||||||||| ||||||||||| |||||| |||||| | | | |||||||||||    
T  25944556 atacaccaaaatggtgggaccccttccctgaccctgcgtatgtgggagctttagcgcaccaggctgcccttt 25944627  T

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Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 47624089 - 47624162
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctg 373  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||    
T  47624089 aacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctg 47624162  T

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Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 55400986 - 55401022
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaa 276  Q
    ||||| |||||||||||||||||||||||||||||||    
T  55400986 ttggcacaacggtaaagttgttgtcatgtgactaaaa 55401022  T

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Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 44403725 - 44403587
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||| |||||||||||||| |||||| ||| |||||| ||| || ||| |||||| | ||| || |||||||||||||  |||||||||| ||| | | |    
T  44403725 ttggtgcaacggtaaagttattgtcacgtggctaaaaggtcacaggttaaagtcctgggaatagcctcttgtgtaaaa-gacaaggtaaggctgcggaga 44403627  T
Q  340 tta-caccaaat-atgggaccccttcccggaccctgcgta 377  Q
     || ||| ||||  ||||||||||||||||||||| ||||    
T  44403626 ataccacaaaatggtgggaccccttcccggaccctacgta 44403587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 10870121 - 10870043
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaa 317  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||||    
T  10870121 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa 10870043  T

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Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 53062026 - 53062080
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtcc 294  Q
    |||||||| |||||||||||||||||||||||| ||| ||| | |||| ||||||    
T  53062026 ttggcgcatcggtaaagttgttgtcatgtgactgaaaggtcacgtgttcaagtcc 53062080  T

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Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 31592896 - 31593004
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  |||||| |||||||||||||||| || | |||| || ||||| | |    
T  31592896 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggactccttcccggaccctgcatatgcgggagctctagtgcacc 31592992  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  31592993 gggttgcccttt 31593004  T

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Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 33235584 - 33235629
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 350  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||    
T  33235584 ctcttgtgtaaaaaaacagggtaagactgtgtacaatacactaaat 33235629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 52926304 - 52926219
Alignment:
Q  325 gtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    ||||| ||| ||||| ||||||||||  |||||| ||||||||||||||||||| | |||| |||||| | | |||| ||||||||    
T  52926304 gtaaggctgcgtacaatacaccaaatggtgggacaccttcccggaccctgcgtatgcgggagctttagcgcaccgggttgcccttt 52926219  T

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Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 516513 - 516569
Alignment:
Q  353 gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    ||||||||||||| ||||||||||| | |||| |||||||| | |||| ||||||||    
T  516513 gggaccccttccccgaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 516569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 10795535 - 10795422
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgta 395  Q
    ||||| ||||||||||||| | || |||||| ||| ||||| ||||||||| ||||   |||||||||| |||||||||||| | |||| ||| |||| |    
T  10795535 aacagcctcttgtgtaaaaga-cagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcctggaccctgcgtatgcgggagcttcagtgca 10795437  T
Q  396 acgggctgcccttta 410  Q
     | || |||||||||    
T  10795436 ccaggttgcccttta 10795422  T

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Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 35417904 - 35417936
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    |||||||||||||||||||||| ||||||||||    
T  35417904 ttggcgcaacggtaaagttgttatcatgtgact 35417936  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 409
Target Start/End: Complemental strand, 46248112 - 46247953
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||  |  ||||| ||||||||||||| |||| |||||||||| ||||| |||||||||    
T  46248112 ggtaaagttgttgtcatgtgactgaaatgtcacgggttcaagtcttggaaacagcctcttgtgtaaaa-aacagggtaagactgcgtacaatacaccaaa 46248014  T
Q  350 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |  |||||||||||||||||||||||||| | |||| |||||||||| |||| ||||||||    
T  46248013 tggtgggaccccttcccggaccctgcgtatgcgggagctttagtgtaccgggttgcccttt 46247953  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 18724714 - 18724582
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| |||||||||    
T  18724714 ttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgtgtaca 18724616  T
Q  340 ttacaccaaat-atgggaccccttcccggaccct 372  Q
     ||||||||||  |||||||||||||||||||||    
T  18724615 atacaccaaatcttgggaccccttcccggaccct 18724582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 372
Target Start/End: Complemental strand, 41319965 - 41319843
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||| || |||||||||| |  ||||||||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  41319965 ggtaaagttgttgtcatgtgactgaaaggtcacaggtttaagtcctggaaacagtctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 41319867  T
Q  350 t-atgggaccccttcccggaccct 372  Q
    | |||||||||||||||| |||||    
T  41319866 tgatgggaccccttcccgaaccct 41319843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 250 - 406
Target Start/End: Original strand, 46991803 - 46991959
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||||||||| |||||| ||    
T  46991803 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgtgtacaatacaccgaa 46991901  T
Q  350 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 406  Q
    |  |||||||||||||||||||||||||| |||||| |||||||| | |||| |||||    
T  46991902 tggtgggaccccttcccggaccctgcgtatgtgggagctttagtgcaccgggttgccc 46991959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 14617026 - 14617180
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||| |||||||||||||||  || ||||    
T  14617026 ttggcgcaaccggtaaagttgttgtcatgtgactgaaaggtcacgagttcaagtcctggaaacagcctcttgtgt-aaataacaaggtaaggttgcgtac 14617124  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||||||||  ||||| ||||||||||||||||| || | |||| ||||||||    
T  14617125 aatacaccaaatggtgggatcccttcccggaccctgcatatgcgggagctttagtg 14617180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 18944631 - 18944804
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| || ||| ||| || |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  18944631 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaaggcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 18944729  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaac-tttagtgtaacgggctgcccttt 409  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| | ||||||| | |||| ||||||||    
T  18944730 aatacaccaacaatggtgggaccccttcccggaccctgcgtatgcgggagcttttagtgcaccgggttgcccttt 18944804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 378
Target Start/End: Complemental strand, 35117930 - 35117797
Alignment:
Q  247 aacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacacc 346  Q
    ||||||||||||||||||| |||||| ||| ||| |  ||| |||||| |  || || ||||||||||||||| || |||||| ||||||||| ||||||    
T  35117930 aacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaatagcctcttgtgtaaaata-cagggtaaggctgtgtacaatacacc 35117832  T
Q  347 aaatatg---ggaccccttcccggaccctgcgtaa 378  Q
    ||| |||   |||||||||||||||||||||||||    
T  35117831 aaaaatgatgggaccccttcccggaccctgcgtaa 35117797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 34725266 - 34725098
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  34725266 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 34725170  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||| ||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  34725169 aatacactaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 34725098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 393
Target Start/End: Complemental strand, 23768479 - 23768336
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| || ||| |||||  |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  23768479 ggtaaagttgttgtcatgtgactgtaaggtcacaggttcaagtcatggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 23768381  T
Q  350 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    |  |||||| ||||||| ||||||||||| | |||| ||||||||    
T  23768380 tggtgggacaccttcccagaccctgcgtatgcgggagctttagtg 23768336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 393
Target Start/End: Original strand, 27474280 - 27474422
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||| || ||| |||||  |  ||||||||||||||||||  |||| || ||  ||| ||||| |||||  ||    
T  27474280 ggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcttggaaacagtctcttgtgtaaa--aacagggcaaagctgcgtacaatacactgaa 27474377  T
Q  350 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    |  |||||||||||||||||||||||||| | |||| ||||||||    
T  27474378 tggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 27474422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 410
Target Start/End: Original strand, 4349705 - 4349797
Alignment:
Q  319 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    |||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  4349705 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 4349797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 409
Target Start/End: Original strand, 8197046 - 8197201
Alignment:
Q  254 aagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-t 352  Q
    ||||||||||||||||||| ||| ||| |  ||| |||||| |  ||  | ||||||||||||| |||| |||||| ||  ||||| ||||||||||  |    
T  8197046 aagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggtaattgcctcttgtgtaaaa-aacatggtaaggctacgtacagtacaccaaatggt 8197144  T
Q  353 gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |||||||||| ||||||||||||| || ||| |||||||||| |||| ||||||||    
T  8197145 aggaccccttctcggaccctgcgtatgttggagctttagtgtaccgggttgcccttt 8197201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 19701559 - 19701713
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||| |||||||||||||| ||||||| ||| ||| |  |||||||||  |  ||||| ||||||||||||| |||  ||||||  || |||||    
T  19701559 ttggcgcaacagtaaagttgttgtcgtgtgactgaaatgtcacgggtttaagtcatgaaaacagcctcttgtgtaaaa-aacttggtaaggatgggtaca 19701657  T
Q  340 ttacaccaaa--tatgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
     |||||||||    |||| ||||||||||||||||||||| | |||| ||||||||    
T  19701658 atacaccaaaatggtggggccccttcccggaccctgcgtatgcgggagctttagtg 19701713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 6983978 - 6983811
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||| |||||||||||||||| |||||| ||| ||| || ||| |||||| |  ||||| |||  || ||||| |||| ||||||  || |||||    
T  6983978 ttggcgcaatggtaaagttgttgtcacgtgactgaaaggtcacaggttcaagtcctggaaacagcctc--gtataaaa-aacagggtaagtatgcgtaca 6983882  T
Q  340 ttacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     ||||||||||  ||||||||||| |||||||||||||| |  ||| |||| ||| | |||||||||||||    
T  6983881 atacaccaaatggtgggacccctttccggaccctgcgtaggcaggagctttggtgcaccgggctgcccttt 6983811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 409
Target Start/End: Complemental strand, 20999952 - 20999850
Alignment:
Q  307 cttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcc 405  Q
    ||||||||||| ||||||| ||| ||| ||||| |||||||||| ||||| |||||||| | |||||||||| | |||| |||||||| | |||||||||    
T  20999952 cttgtgtaaaa-aacaaggcaaggctgcgtacaatacaccaaatgatggggccccttccggcaccctgcgtacgcgggagctttagtgcaccgggctgcc 20999854  T
Q  406 cttt 409  Q
    ||||    
T  20999853 cttt 20999850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 30395898 - 30395742
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  30395898 ttggcgcaactggtaaagttgttgtcatgtgactttaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 30395800  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||||||  |   |||||||||||||||||||| || || | |||| ||||||||    
T  30395799 aatacaccaataatggtgggaccccttcccggaccccgcatatgcgggagctttagtg 30395742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 374
Target Start/End: Original strand, 47214498 - 47214632
Alignment:
Q  239 tttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 337  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||||||||||| |||   |||| ||||||  || |||    
T  47214498 tttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagtctcttgtttaa---aacagggtaaggttgcgta 47214594  T
Q  338 cattacaccaaat-atgggaccccttcccggaccctgc 374  Q
    || ||||||||||  |||||||||||||| ||||||||    
T  47214595 caatacaccaaatggtgggaccccttcccagaccctgc 47214632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 406
Target Start/End: Original strand, 52910206 - 52910379
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||| |||||||||||||||||||||||||||| ||| ||| || ||| || ||  |  ||||| |||||  |||||| |||| |||| |||||||||||    
T  52910206 ttggtgcaacggtaaagttgttgtcatgtgactgaaaggtcacaggttcaactcttggaaacagcctcttaggtaaaaaaacagggtaggactgtgtaca 52910305  T
Q  340 ttacaccaaat-------atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 406  Q
     |||||| |||        ||||||||||||| ||| ||| |||| ||||||||||||||| | | ||||||||    
T  52910306 atacacctaatggttatggtgggaccccttcctggaacctccgtatgtgggaactttagtgcaccaggctgccc 52910379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 20036209 - 20036347
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||  ||||||||||||   | | ||||||| || || ||    
T  20036209 ttggcgcaatggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacaaactcttgtgtaaagagaaagggtaagattgcgttca 20036308  T
Q  340 ttacaccaaat-atgggaccccttcccggaccctgcgta 377  Q
     ||||||||||  ||| ||||||||||||||||||||||    
T  20036309 atacaccaaatggtggaaccccttcccggaccctgcgta 20036347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 338
Target Start/End: Original strand, 22327088 - 22327185
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||||| |||||||||||||||||||| ||| |||||  ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||||||||    
T  22327088 ttggcgcaacggcaaagttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgtgtac 22327185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 32632726 - 32632592
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  32632726 ttggcgcaactggtaaagttgttgtcatatgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggctgcgtac 32632629  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgc 374  Q
    | ||||||||||  ||||||||||||||  |||||||    
T  32632628 aatacaccaaatggtgggaccccttcccaaaccctgc 32632592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 4430185 - 4430086
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| |  |||||||||  |  |||||| |||||||||||| |||| |||||||||| ||||| |||||||||    
T  4430185 ggtaaagttgttgtcatgtgactggaaggtcacgggtttaagtcttgaaaacagtatcttgtgtaaaa-aacagggtaagactgcgtacaatacaccaaa 4430087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 10668208 - 10668385
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtga-----ctaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactg 333  Q
    |||||||||| |||||||||||||||||||||     || ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||||||||||  ||    
T  10668208 ttggcgcaactggtaaagttgttgtcatgtgatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacaaggtaaggttg 10668306  T
Q  334 tgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     ||||| ||||||||  ||||   ||||||||||||| ||||||||| | |||| |||||||| | |||| ||||||||    
T  10668307 cgtacaatacaccaataatggtgggaccccttcccggtccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10668385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 409
Target Start/End: Complemental strand, 20004251 - 20004090
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| |||| |||||||| ||||||||||| ||| ||||| ||||||||     
T  20004251 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctctcgtgtaaaa-aacaaggtaaggctgcgtacaatacaccaat 20004153  T
Q  350 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |   |||||||||||||| ||||| || || | |||| |||||||| | |||| ||||||||    
T  20004152 aatggtgggaccccttcccagaccccgcatatgcgggagctttagtgcaccgggttgcccttt 20004090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 393
Target Start/End: Original strand, 27201646 - 27201791
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| ||||||||| | | |||| |||||| ||| ||||| |||||||||    
T  27201646 ggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtgtcaga-aacagggtaaggctgcgtacaatacaccaaa 27201744  T
Q  350 tatgg---gaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
     ||||   |||||||||||||||| |||||| | |||| ||||||||    
T  27201745 aatggtgggaccccttcccggaccttgcgtatgcgggagctttagtg 27201791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 35005171 - 35005283
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgta 395  Q
    ||||| ||||||||||||| |||| |||||| |||  |||| ||||||||| ||||   ||||||||||||||||||||||| | |||  |||||||| |    
T  35005171 aacagcctcttgtgtaaaa-aacagggtaaggctgcatacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgcgggcgctttagtgca 35005269  T
Q  396 acgggctgcccttt 409  Q
     |||| ||||||||    
T  35005270 ccgggttgcccttt 35005283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 45812705 - 45812627
Alignment:
Q  240 ttggcgcaacgg-taaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaa 317  Q
    |||||||||| | ||||||||||||||||||||| ||| ||| || ||| |||||| |  |||||||||||||||||||    
T  45812705 ttggcgcaactgataaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctgaaaacagtctcttgtgtaaaa 45812627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 42304264 - 42304223
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  42304264 tgggaccccttcccggaccctgcgtatgtgggagctttagtg 42304223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 18742131 - 18741989
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaa-cagtctcttgtgtaaaataacaaggtaagactgtgta 337  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| || ||  | ||| |||||| |||| ||||| |||| |||||| ||| |||    
T  18742131 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcaagggttcaaatcttgggaaacagtcttttgtataaaaaaacagggtaaggctgcgta 18742032  T
Q  338 cattacaccaaatatgg---gaccccttcccggaccctgcgta 377  Q
    || ||||||||| ||||   ||||||||||| |||||||||||    
T  18742031 caatacaccaaaaatggtgggaccccttcccagaccctgcgta 18741989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 28894700 - 28894660
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtc 280  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  28894700 ttggcgcaacagtaaagttgttgtcatgtgactgaaaagtc 28894660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 31382323 - 31382214
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| |||||||||||||  ||| | |||| ||| ||||| ||||||||||  ||||||||||||| ||||||||| || | |||| ||||| |||| |    
T  31382323 aacagcctcttgtgtaaaa--acaggataaggctgcgtacaatacaccaaatggtgggaccccttcctggaccctgcatatgcgggagctttactgtacc 31382226  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  31382225 gggttgcccttt 31382214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 50811928 - 50812098
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |    | | |||| |  |||||  |||||||||||| |||| ||||||  || |||||    
T  50811928 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacggaatcatgtcctggaaacagcttcttgtgtaaaaaaacagggtaaggttgcgtaca 50812027  T
Q  340 ttacaccaaatatg--ggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     ||||||||| |||  |||||||||||||  ||||||||| | |||| ||||| || |  ||||||||||||    
T  50812028 atacaccaaa-atggtggaccccttcccgcgccctgcgtatgcgggagctttaatgcactgggctgcccttt 50812098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 34679395 - 34679356
Alignment:
Q  233 gggagttttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  34679395 gggagctttggcgcaacggtaaagttattgtcatgtgact 34679356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 374
Target Start/End: Complemental strand, 12126993 - 12126872
Alignment:
Q  251 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa- 349  Q
    |||||||||||||||||| | | ||| ||| |  |||||||| | |  |||||  ||||||||||   |||| |||||| ||| ||||| |||||||||     
T  12126993 gtaaagttgttgtcatgtaattgaaaggtcacgggtttaagttctggaaacagcttcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaat 12126897  T
Q  350 tatgggaccccttcccggaccctgc 374  Q
    | |||||||||||||||||||||||    
T  12126896 tgtgggaccccttcccggaccctgc 12126872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 15505636 - 15505690
Alignment:
Q  324 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    |||||||||| ||||| ||||||||||  ||||||||||||||| ||||||||||    
T  15505636 ggtaagactgcgtacaatacaccaaatggtgggaccccttcccgaaccctgcgta 15505690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 377
Target Start/End: Complemental strand, 19932856 - 19932785
Alignment:
Q  308 ttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgta 377  Q
    |||||||||| |||| |||||| ||| ||||| ||||||||| ||||   |||||||||||||||||||||||    
T  19932856 ttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgta 19932785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 25554891 - 25554837
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtcc 294  Q
    ||||||||| |||||||||||||||| |||||||||| | | | |||||||||||    
T  25554891 ttggcgcaatggtaaagttgttgtcacgtgactaaaaggccacgtgtttaagtcc 25554837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 30682868 - 30682938
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    |||||||||||||  ||||||||||| ||||||||| ||| |||||  ||||||||||||||||||| ||||||    
T  30682868 ctcttgtgtaaaa--acaaggtaagattgtgtacat-acaacaaatggtgggaccccttcccggaccgtgcgta 30682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 31442546 - 31442516
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtga 270  Q
    |||||||||||||||||||||||||||||||    
T  31442546 ttggcgcaacggtaaagttgttgtcatgtga 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 35253295 - 35253222
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 374  Q
    ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||    
T  35253295 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgc 35253222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 2435956 - 2435848
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |  ||| |||||| |  ||||| ||| ||||| ||| || | |||||| ||| |||||    
T  2435956 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagcctcctgtgtgaaa-aatagggtaagcctgcgtaca 2435858  T
Q  340 ttacaccaaa 349  Q
     |||||||||    
T  2435857 atacaccaaa 2435848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 14988078 - 14988009
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaata 319  Q
    ||||||||||||||||| |||||| |||||| || ||| |||||| |  |||||| |||| |||||||||    
T  14988078 ggtaaagttgttgtcatatgactagaaagtcacaagttcaagtcctgaaaacagtatcttatgtaaaata 14988009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 22930237 - 22930104
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| || |||||||||  |||| ||||||  |||| ||    
T  22930237 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagccttttgtgtaaa--aacagggtaaggttgtg-ac 22930141  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgc 374  Q
    | ||||||||||  ||||||||||||| |||||||||    
T  22930140 aatacaccaaatggtgggaccccttcctggaccctgc 22930104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 409
Target Start/End: Complemental strand, 38478438 - 38478282
Alignment:
Q  251 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 350  Q
    ||||| |||||||||||||||| ||| ||| |  ||| ||||||    ||||| |||||||||||   |||| |||||| ||| ||||| ||||||||||    
T  38478438 gtaaacttgttgtcatgtgactgaaaggtcacgggttcaagtcctagaaacagcctcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaat 38478342  T
Q  351 -atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
      ||| |||||||| |||||||||| || | |||| || ||||| | |||| ||||||||    
T  38478341 ggtggaaccccttctcggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 38478282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 50606504 - 50606561
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    ||||||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  50606504 tgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 50606561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 406
Target Start/End: Complemental strand, 10378826 - 10378738
Alignment:
Q  319 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 406  Q
    |||| |||||| ||| ||||| ||||||||||  ||||||||||||  ||||||||| || | |||| |||||||| | ||||||||||    
T  10378826 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcttggaccctgcatatgcgggagctttagtgcaccgggctgccc 10378738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 43207478 - 43207510
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    |||||||||||||||||||||||||| ||||||    
T  43207478 ttggcgcaacggtaaagttgttgtcacgtgact 43207510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 45402179 - 45402251
Alignment:
Q  335 gtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 406  Q
    ||||| ||||||||||  |||||||||||||| ||||||||||| | |||| |||||||| | |||| |||||    
T  45402179 gtacaatacaccaaatggtgggaccccttcccagaccctgcgtatgcgggagctttagtgcaccgggttgccc 45402251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 410
Target Start/End: Complemental strand, 23419843 - 23419673
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||| |||||||||||||||| ||| || ||| |||| | |  ||||| ||||||||||||| |||| |||||||||| |||||    
T  23419843 ttggcgcaacggtaaagttgctgtcatgtgactaaaaggtcacaggttcaagttctggaaacagcctcttgtgtaaaa-aacagggtaagactgcgtaca 23419745  T
Q  340 ttacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
     ||||||||||  |||||||||||||  |||| |||||  | |||  |||||||| | ||||||||||||||    
T  23419744 atacaccaaatggtgggaccccttcctagaccttgcgtgtgcgggggctttagtgcatcgggctgcccttta 23419673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 32758226 - 32758394
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||| |||||||||||   |||| |||||| ||||||||    
T  32758226 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgtgtac 32758322  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  32758323 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 32758394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 408
Target Start/End: Complemental strand, 11617756 - 11617589
Alignment:
Q  242 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 340  Q
    |||||||| ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||  ||||||||||||| |||| |||||||||| |||||     
T  11617756 ggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaagactgcgtacaa 11617658  T
Q  341 tacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 408  Q
    ||||||||||  ||||||||||||| |||||||||||| |  ||| |||||||| | |||| |||||||    
T  11617657 tacaccaaatggtgggaccccttcctggaccctgcgtatgcaggacctttagtgcaccgggttgccctt 11617589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 42798634 - 42798804
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||  |  ||||||||||||||||||| ||||||||||| ||| ||||    
T  42798634 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcttggaaacagtctcttgtgtaaaa-aacaaggtaaggctgcgtac 42798732  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  |||||||| |||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  42798733 aatacaccaaatggtgggaccctttcccggaccctgcatatgcgggagctatagtgcatcgggttgcccttt 42798804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 35334984 - 35334848
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  |||||||||  |||||||| |||| |||||||||||||||    
T  35334984 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgagttcaagtcctggaaacagtctc--gtgtaaaa-aacagggtaagactgtgtac 35334888  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    | |||||| |||  ||||||||||||||||||||||||||    
T  35334887 aatacaccgaatggtgggaccccttcccggaccctgcgta 35334848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 7879663 - 7879773
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    |||| |||||||||||||| ||||||||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| ||| |||| | |    
T  7879663 aacaatctcttgtgtaaaa-aacaaggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcacc 7879761  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  7879762 gggttgcccttt 7879773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 410
Target Start/End: Complemental strand, 2541190 - 2541018
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaag-tcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 337  Q
    |||||||||| |||||||||||||||||||||||  |||| || |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| |||    
T  2541190 ttggcgcaactggtaaagttgttgtcatgtgactggaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgta 2541092  T
Q  338 cattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    |  ||||||||||  |||||||||||||||| ||||||||| | |||| |||||||| | |||| | |||||||    
T  2541091 ctatacaccaaatggtgggaccccttcccggtccctgcgtatgcgggagctttagtgcaccgggtttcccttta 2541018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 21172177 - 21172009
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||| ||| ||| ||| |  ||| |||||| |  ||||| |||||||||||||   || |||||| ||| ||||    
T  21172177 ttggcgcaactggtaaagttgttgtcatgtaactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgtac 21172081  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  21172080 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 21172009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 42805500 - 42805661
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||||||||| ||||||||     
T  42805500 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgtgtacaatacaccaat 42805598  T
Q  350 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |   |||||||||||||||||||| || || | |||| |||||||| | |||| ||||||||    
T  42805599 aatggtgggaccccttcccggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 42805661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 19266416 - 19266553
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||| |||||||||||||||||||||||||||| ||| ||||   ||| |||||| |  || || | |||| |||||| |||| |||||| ||| |||||    
T  19266416 ttggtgcaacggtaaagttgttgtcatgtgactgaaaggtcgtgggttcaagtcctgaaaatagccacttgcgtaaaa-aacagggtaaggctgcgtaca 19266514  T
Q  340 ttacaccaaa-tatgggaccccttcccggaccctgcgta 377  Q
     ||||||||| | ||||| ||||||||||||||||||||    
T  19266515 atacaccaaattgtgggatcccttcccggaccctgcgta 19266553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 389
Target Start/End: Complemental strand, 28362314 - 28362165
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||||||| || ||| ||| || ||| ||||||    ||| | ||||||||||||| |||  |||||| ||| |||||    
T  28362314 ttggcgcaacggtaaagttgttgtcatgtggctgaaaggtcacaggttcaagtcctagaaactgcctcttgtgtaaaa-aacttggtaaggctgcgtaca 28362216  T
Q  340 ttacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaacttt 389  Q
     ||||||||||  |||||||||||||| |||| ||| || |||||| ||||    
T  28362215 atacaccaaatggtgggaccccttcccagaccttgcatatgtgggagcttt 28362165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 1408488 - 1408560
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    ||||||||||||| ||||||||||| ||||||||| |||| |||||  ||||||||||||||||||||||||||    
T  1408488 ctcttgtgtaaaa-aacaaggtaaggctgtgtacaatacagcaaatggtgggaccccttcccggaccctgcgta 1408560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 19265781 - 19265948
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |  ||| |||||  |   |||| | |||||||||||  | | |||||| ||| |||||    
T  19265781 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcttggatacagccgcttgtgtaaaa--agagggtaaggctgcgtaca 19265878  T
Q  340 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     ||||||||||  ||||||||||||||||| ||| | || |||||| |||||||| | |||||||||||||    
T  19265879 atacaccaaatggtgggaccccttcccgga-cctacatatgtgggagctttagtgcaccgggctgcccttt 19265948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 410
Target Start/End: Complemental strand, 48735291 - 48735121
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaa-cagtctcttgtgtaaaataacaaggtaagactgtgta 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| ||||||   ||| ||  |||||||||||||   || |||||| ||| |||    
T  48735291 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtccttggaaacaacctcttgtgtaaaa---cacggtaaggctgcgta 48735195  T
Q  338 cattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    || ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| |||||||||    
T  48735194 caatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttta 48735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 374
Target Start/End: Complemental strand, 10693229 - 10693108
Alignment:
Q  251 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 350  Q
    |||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |    |||||| ||| ||||| ||||||||||    
T  10693229 gtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaagag---ggtaaggctgcgtacaatacaccaaat 10693133  T
Q  351 a-tgggaccccttcccggaccctgc 374  Q
      |||||||||||||||||||||||    
T  10693132 ggtgggaccccttcccggaccctgc 10693108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 33872068 - 33871946
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| |||||  ||| |||||| |  ||||  ||||||||||||  |||| | |||| ||| ||||| |||||||||    
T  33872068 ggtaaagttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacaacctcttgtgtaaa--aacaggataaggctgcgtacaatacaccaaa 33871971  T
Q  350 t-atgggaccccttcccggaccctg 373  Q
    |  |||||||||||||| |||||||    
T  33871970 tggtgggaccccttcccagaccctg 33871946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 364
Target Start/End: Original strand, 42476849 - 42476961
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||||||| ||| |   || |||| | |  |||||||||||||||||||   ||||||||| ||| ||||| |||||||||    
T  42476849 ggtaaagttgttgtcatgtgactaaaaggtcacggattcaagttctggaaacagtctcttgtgtaaaa---caaggtaaggctgcgtacaatacaccaaa 42476945  T
Q  350 t-atgggaccccttcc 364  Q
    |  |||||||||||||    
T  42476946 tggtgggaccccttcc 42476961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 19427059 - 19426925
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||  ||| ||| |  ||| |||||| |  ||||| ||||||||||||| || | |||||||||| ||||    
T  19427059 ttggcgcaactggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aatagggtaagactgcgtac 19426961  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgc 374  Q
    | ||||||||||  ||||| |||||| ||||||||||    
T  19426960 aatacaccaaatggtggga-cccttctcggaccctgc 19426925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 409
Target Start/End: Complemental strand, 42391251 - 42391100
Alignment:
Q  256 gttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgg 354  Q
    ||||||||||||||||| ||| ||| |  ||| |||||| |  |||||  ||||||||||||   || |||||| ||| ||||| ||||||||||  |||    
T  42391251 gttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcttcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgg 42391155  T
Q  355 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  42391154 gaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 42391100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 47078023 - 47077943
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaata 319  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  |||||||||||||||||||||    
T  47078023 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagtctcttgtgtaaaata 47077943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 409
Target Start/End: Complemental strand, 34626366 - 34626208
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||| | ||| | | ||  || |||||| |  ||||| ||| |||||||||  ||| |||||| ||| || || |||||||||    
T  34626366 ggtaaagttgttgtcatgtgattgaaaggccacagattcaagtcctggaaacagcctcctgtgtaaaa--acagggtaaggctgcgttcaatacaccaaa 34626269  T
Q  350 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |  ||||| |||||||||||||||||||| | |||| |||||||  | |||| ||||||||    
T  34626268 tggtgggatcccttcccggaccctgcgtatgcgggagctttagttcatcgggttgcccttt 34626208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 3469348 - 3469316
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    |||||||||||||||||||||||||||||||||    
T  3469348 ttggcgcaacggtaaagttgttgtcatgtgact 3469316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 22699129 - 22699026
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||     ||| |||||| |  || |||||||||||||||| |||| |||||||||| ||||| |||||||||    
T  22699129 ggtaaagttgttgtcatgtgactgaaaggttatgggttcaagtcctggaaatagtctcttgtgtaaaa-aacagggtaagactgcgtacaatacaccaaa 22699031  T
Q  350 tatgg 354  Q
     ||||    
T  22699030 aatgg 22699026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 27629599 - 27629734
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||| ||||  ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| ||||||  || |||     
T  27629599 ttggcgcaactggtaaagttgttgtcatttgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggttgcgtaa 27629697  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgc 374  Q
    | ||||||||||  |||||||||||||||| ||||||    
T  27629698 aatacaccaaatggtgggaccccttcccgggccctgc 27629734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 40463842 - 40463979
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||     |||||||||||||||||||  ||  |||||| ||| |||     
T  40463842 ttggcgcaaccggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcatagaaacagtctcttgtgtaaaa--actgggtaaggctgcgtat 40463939  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    | ||||||||||  |||||||||||| |||||||||||||    
T  40463940 aatacaccaaatggtgggaccccttctcggaccctgcgta 40463979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 13805068 - 13805204
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||| ||||||||||||||||||||||| ||| ||  |  ||| |||||| |  || || |||| |||||||| |    |||||| |||||||||    
T  13805068 ttggcgcaatggtaaagttgttgtcatgtgactgaaaggtaacgggttcaagtcctggaaatagcctctggtgtaaaaca--ggggtaaggctgtgtaca 13805165  T
Q  340 ttacaccaaat-atgggaccccttcccggaccctgcgta 377  Q
     ||||||||||  ||||||| ||||| ||||||||||||    
T  13805166 atacaccaaatggtgggaccacttcctggaccctgcgta 13805204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 362
Target Start/End: Complemental strand, 48123653 - 48123531
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||| ||||||| || ||| |||    ||| |||||| |  ||||| ||||||||| |||||||| ||||| ||||  ||||    
T  48123653 ttggcgcaacggtaaagttgttatcatgtgtctgaaaggtcatgggttcaagtcctggaaacagcctcttgtgt-aaataacagggtaaaactgcataca 48123555  T
Q  340 ttacaccaaat-atgggacccctt 362  Q
     ||||||||||  |||||||||||    
T  48123554 atacaccaaatggtgggacccctt 48123531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 408
Target Start/End: Original strand, 18747511 - 18747621
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| || |||||||||| | || |||||| ||| ||| | |||||||| |  ||||||||||||| | |||||||||| | |||| |||||||| | |    
T  18747511 aacagccttttgtgtaaaaaagcagggtaaggctgcgtataatacaccaattggtgggaccccttcctgaaccctgcgtatgcgggagctttagtgcacc 18747610  T
Q  398 gggctgccctt 408  Q
    |||||||||||    
T  18747611 gggctgccctt 18747621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 14732992 - 14732951
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtc 280  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  14732992 ttggcgcaactggtaaagttgttgtcatgtgactgaaaagtc 14732951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 15108506 - 15108424
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgg 382  Q
    |||||| ||||||||||||  |||||||||| ||||||||| |||| |||||| ||||| ||||||||  |||||| ||| ||||    
T  15108506 aacagtttcttgtgtaaaa--acaaggtaaggctgtgtacaatacatcaaatagtgggatcccttcccaaaccctgtgtatgtgg 15108424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 23231588 - 23231660
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgta 377  Q
    |||||||||||||||  |||||||| ||| ||| | |||||| ||| |||||||||||||||| ||||||||||    
T  23231588 ctcttgtgtaaaatat-aaggtaaggctgcgtataatacaccgaatgatgggaccccttcccgaaccctgcgta 23231660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 38604552 - 38604642
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaacttta 390  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||| ||||||||||  || |||||||| |||||||||||||| | |||| |||||    
T  38604552 aacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaatggtgagacccctttccggaccctgcgtatgcgggagcttta 38604642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 43557448 - 43557610
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| ||||||||||||| ||||  ||||| ||| ||||| ||||||||     
T  43557448 ggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagagtaaggctgcgtacaatacaccaat 43557546  T
Q  350 ta---tgggaccccttcccggaccctgcgtaagtgggaac-tttagtgtaacgggctgcccttt 409  Q
     |   ||||||||| |||||||| ||||||| | |||| | ||||||| | |||| ||||||||    
T  43557547 aatggtgggaccccctcccggactctgcgtatgcgggagcttttagtgcaccgggttgcccttt 43557610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 234 - 379
Target Start/End: Complemental strand, 47441705 - 47441560
Alignment:
Q  234 ggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactg 333  Q
    |||| ||||||||||||||||||||||||||| |||||| ||| ||| || ||| |||||||   ||||||||||| ||||||| | || |||||| |||    
T  47441705 ggagctttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacaggttcaagtccaagaaacagtctcttttgtaaaa-atcagggtaaggctg 47441607  T
Q  334 tgtacattacaccaaat-atgggaccccttcccggaccctgcgtaag 379  Q
    |||||| ||||||||||  | |||||||||||||||||||| |||||    
T  47441606 tgtacaatacaccaaatggttggaccccttcccggaccctgagtaag 47441560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 239 - 409
Target Start/End: Complemental strand, 11054317 - 11054148
Alignment:
Q  239 tttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 337  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  |||||||||||||||||   |||| |||||||||| |||    
T  11054317 tttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctgaaaacagtctcttgtgtaa---aacagggtaagactgcgta 11054221  T
Q  338 cattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    || ||||||||||   || ||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  11054220 caatacaccaaatggcggaaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 11054148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 409
Target Start/End: Complemental strand, 47528687 - 47528530
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||| |||||||||    
T  47528687 ggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaa 47528591  T
Q  350 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |  ||||||||||||||||||||||  || |||||| || ||||| | |||| ||||||||    
T  47528590 tggtgggaccccttcccggaccctgaatatgtgggagctctagtgcaccgggttgcccttt 47528530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 40915805 - 40915931
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||| || ||| |  ||| |||||| |  ||||| ||||||||||||  ||||||||||| ||| ||||| |||||||||    
T  40915805 ggtaaagttgttgtcatgtgactataaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacaaggtaaggctgcgtacaatacaccaaa 40915902  T
Q  350 t-atgggaccccttcccggaccctgcgta 377  Q
    |  ||||| ||||||||||||||||||||    
T  40915903 tggtgggagcccttcccggaccctgcgta 40915931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 5648224 - 5648361
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| |||||||||||||  ||| |||||| ||| ||||    
T  5648224 ttggcgcaactggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtac 5648321  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    | ||||||||||  ||||||||||||||||||||||||||    
T  5648322 aatacaccaaatggtgggaccccttcccggaccctgcgta 5648361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 408
Target Start/End: Complemental strand, 6430795 - 6430627
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||  |  ||||| |||||||||||||  ||| |||||| ||| ||||    
T  6430795 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcatggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtac 6430698  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 408  Q
    | ||||||||||  ||||||| |||||||||||||||||| | |||| |||||| | | |||| |||||||    
T  6430697 aatacaccaaatggtgggaccacttcccggaccctgcgtatgcgggagctttagcgcaccgggttgccctt 6430627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 5306833 - 5306691
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||| |||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||||  || ||||||  || ||||    
T  5306833 ttggcgcaactggtaaagttgatgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaat--cagggtaaggttgcgtac 5306736  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgg 382  Q
    | ||||||||||  |||||||||||||||||||||||||| ||||    
T  5306735 aatacaccaaatggtgggaccccttcccggaccctgcgtatgtgg 5306691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 409
Target Start/End: Original strand, 35567141 - 35567305
Alignment:
Q  245 gcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattaca 344  Q
    |||||||||||||||||||||||| ||| ||| |||    ||| |||||  |  ||||| | ||||||||||| |||| |||||| |||||||||  |||    
T  35567141 gcaacggtaaagttgttgtcatgtaactgaaaggtcatgggttcaagtcttggaaacagccacttgtgtaaaa-aacagggtaaggctgtgtacaacaca 35567239  T
Q  345 ccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    ||||||  ||||||||||||||| |||||||||  | |||| |||||||| | |||||||||||||    
T  35567240 ccaaatggtgggaccccttcccgaaccctgcgtctgcgggagctttagtgcaccgggctgcccttt 35567305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 374
Target Start/End: Complemental strand, 17043567 - 17043429
Alignment:
Q  233 gggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagact 332  Q
    |||||| |||||||||||   |||||||||||| |||||| ||| ||| || ||| |||||| |  ||||| |||||||||||||| ||| |||||| ||    
T  17043567 gggagtcttggcgcaacg---aagttgttgtcaagtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaat-acagggtaaggct 17043472  T
Q  333 gtgtacattacaccaaat-atgggaccccttcccggaccctgc 374  Q
    | ||||| ||||||||||  |||||||||||||| ||||||||    
T  17043471 gcgtacaatacaccaaatggtgggaccccttcccagaccctgc 17043429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 30639345 - 30639498
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  30639345 ttggcgcaactggtaaagttgttgtcttgtgactgaaaggtcactggttcaagtcctggaaacagactcttgtgtaaa--aacagggtaaggctgcgtac 30639442  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||||||||  || |||||||||||||||||||| || | |||| ||||||||    
T  30639443 aatacaccaaatggtgagaccccttcccggaccctgcatatgcgggagctttagtg 30639498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 16408773 - 16408601
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||||||| ||||    
T  16408773 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaagactgcgtac 16408675  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||  |   ||| |||||||||||||||| || || | |||| |||||||| | |||| ||||||||    
T  16408674 aatacaccaataatggtggaaccccttcccggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 16408601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 16911527 - 16911699
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| ||||||    ||||| |||||||||| || | || |||||| ||| ||||    
T  16911527 ttggcgcaactggtaaagttgttgtcatgtgacttaaaggtcacgggttcaagtcctagaaacagcctcttgtgtacaa-atcagggtaaggctgcgtac 16911625  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| ||||||| || |||| ||||||||    
T  16911626 aatacaccaataatggtgggaccccttcccggaccctgcgtacgcgggagctttagtttaccgggttgcccttt 16911699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 25629074 - 25629184
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||||||||||||||||| || | |||||| ||||||||| ||||||||||  ||||||||||||||||||||| | || | |||| |||||||| | |    
T  25629074 aacagtctcttgtgtaaaa-aatagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctacatatgcgggagctttagtgcacc 25629172  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  25629173 gggttgcccttt 25629184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 370
Target Start/End: Complemental strand, 48598993 - 48598864
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  48598993 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 48598897  T
Q  339 attacaccaaat-atgggaccccttcccggacc 370  Q
    | ||||||||||  |||||||||||||||||||    
T  48598896 aatacaccaaatggtgggaccccttcccggacc 48598864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 20224949 - 20225117
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||  |||||||||||||   || |||||| ||| ||||    
T  20224949 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaa---cagggtaaggctgcgtac 20225045  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  20225046 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 20225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 20639769 - 20639658
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaa 396  Q
    ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    |||||||||||||||||||||||||| | |||| |||||||| |     
T  20639769 aacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcac 20639671  T
Q  397 cgggctgcccttt 409  Q
    |||| ||||||||    
T  20639670 cgggttgcccttt 20639658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 410
Target Start/End: Complemental strand, 44363291 - 44363129
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||| ||||||||| |||| |||| | ||| |||||   |||||||    
T  44363291 ggtaaagttgttgtcatgtgactgaaaggtcacgagttcaagtcctgaaaacagcctcgtgtgtaaaa-aacagggtagggctgcgtacaacgcaccaaa 44363193  T
Q  350 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
     |   |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  44363192 aatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 44363129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 51865148 - 51865038
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||  |||| ||||||||||||||||||||| | |||| ||||| || | |    
T  51865148 aacagcctcttgtgtaaaa-aacatggtaaggctgcgtacaatacaccaaatggtggggccccttcccggaccctgcgtatgcgggagctttattgcacc 51865050  T
Q  398 gggctgcccttt 409  Q
    || |||||||||    
T  51865049 ggactgcccttt 51865038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 393
Target Start/End: Original strand, 54730213 - 54730371
Alignment:
Q  239 tttggcgcaa-cggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 337  Q
    |||||||||| ||||||||||||||||||||||| |||| ||| |  ||| ||||||    ||||| ||||||||||||| || | | |||| ||| |||    
T  54730213 tttggcgcaatcggtaaagttgttgtcatgtgaccaaaaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaaaaataggataaggctgcgta 54730312  T
Q  338 cattacaccaa--at-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
     | ||||||||  || |||| |||||||||||||||||||||| | |||| ||||||||    
T  54730313 taatacaccaataatgatggaaccccttcccggaccctgcgtatgcgggagctttagtg 54730371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 33836544 - 33836487
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||||||||||||||||||||||| | |||| |||||||| |||||| ||||||||    
T  33836544 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaacgggttgcccttt 33836487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 23501758 - 23501924
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||      |||| ||||||||||||| |||| ||||||  || ||||    
T  23501758 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtc------acagcctcttgtgtaaaa-aacagggtaaggttgcgtac 23501850  T
Q  339 attacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||  ||||   |||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  23501851 aatacaccaataatggtgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 23501924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 30581636 - 30581481
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||||| ||||||||||||||  | ||||||| |||    ||| |||||  |  ||||  ||||||||||||| |||| ||||||  ||||||||    
T  30581636 ttggcgcaacgctaaagttgttgtcacatcactaaaaggtcaagggttcaagtcgtggaaacaacctcttgtgtaaaaaaacagggtaagggtgtgtaca 30581537  T
Q  340 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
     |||||||||    ||||||||||||||||||||||| || || ||| ||||||||    
T  30581536 atacaccaaaatggtgggaccccttcccggaccctgcatatgtaggagctttagtg 30581481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 54966987 - 54967039
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagt 292  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||    
T  54966987 ttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcacatgttcaagt 54967039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 30690233 - 30690175
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    |||||||||||||||||||||||||| | |||| |||||||| | | ||||||||||||    
T  30690233 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccaggctgcccttta 30690175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 38755965 - 38755907
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  38755965 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 38755907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 9832421 - 9832313
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || |  |||||| ||||| | |    
T  9832421 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcaggaactctagtgcacc 9832325  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  9832324 gggttgcccttt 9832313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 393
Target Start/End: Original strand, 19027807 - 19027967
Alignment:
Q  233 gggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagact 332  Q
    |||||| ||| ||||| |||| ||||||||||| |||||| ||| ||| |  ||| |||||| |  ||||   |||||||||||| |||| |||||| ||    
T  19027807 gggagtcttgacgcaatggtagagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacaacatcttgtgtaaaa-aacagggtaaggct 19027905  T
Q  333 gtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||| |||||||| |  ||||||||||| || ||| ||||||| |||||| ||||||||    
T  19027906 gcgtacaatacaccaattggtgggacccctttccagactctgcgtatgtgggagctttagtg 19027967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 20908807 - 20908652
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgact-aaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    ||||| ||||||||||||||||||||||||||| |||| ||  |||||| |||||  |  ||||   |||| | ||||| || |||||||| ||| ||||    
T  20908807 ttggcacaacggtaaagttgttgtcatgtgactgaaaatgttacatgttcaagtcatggaaacatcgtcttttctaaaa-aagaaggtaaggctgcgtac 20908709  T
Q  339 attacaccaaa--tatgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | |||||||||    ||||||||||||||| |||||||||| | |||| ||||||||    
T  20908708 aatacaccaaaatggtgggaccccttcccgaaccctgcgtatgcgggagctttagtg 20908652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 349
Target Start/End: Original strand, 25343153 - 25343261
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||| |||||||||||||||| |||||| | | ||| || ||| |||| | |  || |||||||||||||||| |||| |||||| ||| |||||    
T  25343153 ttggcgcaatggtaaagttgttgtcacgtgactgataggtcacaggttcaagttctggaaatagtctcttgtgtaaaa-aacagggtaaggctgcgtaca 25343251  T
Q  340 ttacaccaaa 349  Q
     |||||||||    
T  25343252 atacaccaaa 25343261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 47482907 - 47482850
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||||||||||||||||||||||| | |||| |||| ||| |||| ||||||||||    
T  47482907 tgggaccccttcccggaccctgcgtatgcgggagctttggtgcaacgagctgcccttt 47482850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 7909390 - 7909313
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    |||||||||||||||||||  ||| ||||||  || ||||| ||||||||||  ||||||||||||||| ||||||||||    
T  7909390 aacagtctcttgtgtaaaa--acagggtaaggttgcgtacaatacaccaaatggtgggaccccttcccgaaccctgcgta 7909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 406
Target Start/End: Original strand, 21646929 - 21647098
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| || ||| |||||| |  ||||| ||||||||||||| || | |||||| ||| ||||    
T  21646929 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaa-aatagggtaaggctgcgtac 21647027  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 406  Q
    | || |||||  |   |||||||||||||| ||||| || || | |||| |||||||| | |||| |||||    
T  21647028 aatataccaataatggtgggaccccttcccagaccccgcatatgcgggagctttagtgcaccgggttgccc 21647098  T

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Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 47443982 - 47444057
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 374  Q
    ||||| |||||| |||||| |||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||    
T  47443982 aacagcctcttgcgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgc 47444057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 395
Target Start/End: Original strand, 14983912 - 14983955
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgta 395  Q
    |||||||||||||||||||||||||| | |||| ||||||||||    
T  14983912 tgggaccccttcccggaccctgcgtatgcgggagctttagtgta 14983955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 40553991 - 40553936
Alignment:
Q  355 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    ||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  40553991 gaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 40553936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 54175089 - 54175200
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata--tgggaccccttccc-ggaccctgcgtaagtgggaactttagtgta 395  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||| |||||||||    |||||||||||||| ||||||||| || | |||| |||||||| |    
T  54175089 aacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaaatggtgggaccccttccccggaccctgcatatgcgggagctttagtgca 54175186  T
Q  396 acgggctgcccttt 409  Q
     |||||||||||||    
T  54175187 ccgggctgcccttt 54175200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 11394930 - 11394988
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    ||||||||||| |||||||||||||| | |||| |||||||| | |||| |||||||||    
T  11394930 tgggacccctttccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 11394988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 11404657 - 11404715
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    ||||||||||| |||||||||||||| | |||| |||||||| | |||| |||||||||    
T  11404657 tgggacccctttccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 11404715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 35894618 - 35894572
Alignment:
Q  245 gcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaag 291  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||    
T  35894618 gcaacggtaaagttgttgtcctgtgactgaaaagtcgcgggtttaag 35894572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 3580944 - 3580860
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaacttt 389  Q
    ||||||||||||| | || |||||| |||||| || ||||||||||  | ||||||||||||||||||||| || |||||| ||||    
T  3580944 ctcttgtgtaaaa-accatggtaaggctgtgtgcaatacaccaaatgctaggaccccttcccggaccctgcatatgtgggagcttt 3580860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 29207989 - 29207900
Alignment:
Q  319 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccct 407  Q
    |||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||    
T  29207989 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgccct 29207900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 32484311 - 32484368
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    ||||||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  32484311 tgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 32484368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 49938759 - 49938682
Alignment:
Q  241 tggcgcaacggtaaa-gttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaa 317  Q
    ||||||||||||||| |||||||||| |||||| ||| ||| || ||| |||||| |  ||||| |||||||||||||    
T  49938759 tggcgcaacggtaaaagttgttgtcacgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaa 49938682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 487304 - 487272
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    |||||| ||||||||||||||||||||||||||    
T  487304 ttggcgtaacggtaaagttgttgtcatgtgact 487272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 42164317 - 42164285
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    |||||||||||||||| ||||||||||||||||    
T  42164317 ttggcgcaacggtaaaattgttgtcatgtgact 42164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 49796823 - 49796900
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    ||||| ||||||||| |||  ||| |||||| ||| ||||| ||||||||||  ||||||||||||||| ||||||||||    
T  49796823 aacagcctcttgtgttaaa--acatggtaaggctgcgtacaatacaccaaatggtgggaccccttcccgaaccctgcgta 49796900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 406
Target Start/End: Complemental strand, 4516520 - 4516354
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||| || |||| |    ||||| ||||||||||||| |||| || ||  ||| |||||    
T  4516520 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacatattcaagttctagaaacagcctcttgtgtaaaa-aacagggcaacgctgcgtaca 4516422  T
Q  340 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 406  Q
     |||||||| |  |||||||||||||||||||||||||| |||| | |||||||||| ||||||||||    
T  4516421 atacaccaattggtgggaccccttcccggaccctgcgtatgtggaagctttagtgtaccgggctgccc 4516354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 409
Target Start/End: Complemental strand, 24200784 - 24200623
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||||||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  24200784 ggtaaagttgttgtcatgtgactgaaaagtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 24200686  T
Q  350 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |   ||||| |||||||||||||||| ||| ||| || |||||||| | |||| ||||||||    
T  24200685 aatggtgggaacccttcccggaccctgagtatgtgagagctttagtgcaccgggttgcccttt 24200623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 8455486 - 8455316
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| | || |||||| ||| ||||    
T  8455486 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaca-cagggtaaggctgcgtac 8455388  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  |||||||||||||||||||||||||| |  ||| |||||||| | |||| ||||||||    
T  8455387 aatacaccaaatggtgggaccccttcccggaccctgcgtatgccggagctttagtgcaccgggttgcccttt 8455316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 10543663 - 10543835
Alignment:
Q  240 ttggcgcaacgg-taaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| | ||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||| | ||||||||||||| |||| |||||| ||| ||||    
T  10543663 ttggcgcaactgataaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacggcctcttgtgtaaaa-aacagggtaaggctgcgtac 10543761  T
Q  339 attacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||| ||||   ||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  10543762 aatacaccaaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10543835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 12024088 - 12023951
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  12024088 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggctgcgtac 12023991  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgta 377  Q
    | ||||||||||  ||||||||| ||||||||||||||||    
T  12023990 aatacaccaaatggtgggaccccctcccggaccctgcgta 12023951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 410
Target Start/End: Original strand, 14530283 - 14530456
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||  ||||    
T  14530283 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaaggctacgtac 14530381  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  14530382 aatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 14530456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 9671145 - 9671314
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaa-gtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 337  Q
    |||||||||| |||||||||||||||||||||||  ||| ||| |  ||| || ||| |  ||||| |||||||||||||   || |||||| ||| |||    
T  9671145 ttggcgcaaccggtaaagttgttgtcatgtgactggaaatgtcacgggttcaaatcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgta 9671241  T
Q  338 cattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    || ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  9671242 caatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 9671314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 409
Target Start/End: Original strand, 10546193 - 10546298
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 403  Q
    ||||||| ||||| |||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||    
T  10546193 ctcttgtataaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttg 10546292  T
Q  404 cccttt 409  Q
    ||||||    
T  10546293 cccttt 10546298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 393
Target Start/End: Original strand, 14444754 - 14444847
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    ||||| |||||||||||||  ||| |||||| ||||||||  ||||||||||  |||||||||||||||||||||||||| | |||| ||||||||    
T  14444754 aacagcctcttgtgtaaaa--acagggtaaggctgtgtacgatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 14444847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 11514401 - 11514554
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| || ||| |  ||||| ||||||||||||| ||||| ||||| ||| ||||    
T  11514401 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaactcctggaaacagcctcttgtgtaaaa-aacaaagtaaggctgcgtac 11514499  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||||||||  |||||||| ||||| ||||||||||| | |||| ||||||||    
T  11514500 aatacaccaaatggtgggaccc-ttcccagaccctgcgtatgcgggagctttagtg 11514554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 25079888 - 25079749
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||     ||||  ||||||||||||| |||||||||||  || ||||    
T  25079888 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcttagaaacaacctcttgtgtaaaaaaacaaggtaaggatgcgtac 25079789  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    | |||||| |||  ||||||||||||||||||||||||||    
T  25079788 aatacaccgaatggtgggaccccttcccggaccctgcgta 25079749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 389
Target Start/End: Complemental strand, 21377242 - 21377093
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||| |||||||||||||||||||||||||||| ||| ||  |  ||| |||||     ||||  ||||||||||||| |||| |||||| ||| |||||    
T  21377242 ttggagcaacggtaaagttgttgtcatgtgactgaaaggttacgagttcaagtcatagaaacatcctcttgtgtaaaa-aacagggtaaggctgggtaca 21377144  T
Q  340 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaacttt 389  Q
     | ||||||||  ||||||||||||||| |||||||||| |||||| ||||    
T  21377143 atgcaccaaatggtgggaccccttcccgaaccctgcgtatgtgggagcttt 21377093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 17896290 - 17896379
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    ||||||||||||| || | |||||| ||| ||||| || |||||||  |||||||||||| ||||||||||||| |||||| ||||||||    
T  17896290 ctcttgtgtaaaaaaatagggtaaggctgcgtacaatataccaaatggtgggaccccttctcggaccctgcgtatgtgggagctttagtg 17896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 21779429 - 21779261
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||| ||||||||||||||||||| ||| ||| |  ||| |||||| |   |||| |||||||||||||   || ||||||  || ||||    
T  21779429 ttggcgcaactggtgaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggagacagcctcttgtgtaaaa---cagggtaaggttgcgtac 21779333  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  21779332 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 21779261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 409
Target Start/End: Complemental strand, 25249896 - 25249738
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||  |  |||||||||||||||| |  |||| |||||| ||| ||||| |||||||||    
T  25249896 ggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcatggaaacagtctcttgtgtaca--aacagggtaaggctgcgtacaatacaccaaa 25249799  T
Q  350 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |  ||||| ||||||||| |||||||||| | | || |||||||| | |||| ||||||||    
T  25249798 tggtgggatcccttcccgaaccctgcgtatgcgtgagctttagtgcaccgggttgcccttt 25249738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 40762344 - 40762234
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| ||||||||||||| |||  |||||| ||  ||||| ||||||||||  |||||||| |||| |||||||||||| |||||| |||||||| | |    
T  40762344 aacagcctcttgtgtaaaa-aactgggtaaggctacgtacaatacaccaaatggtgggaccctttcctggaccctgcgtatgtgggagctttagtgcacc 40762246  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  40762245 gggttgcccttt 40762234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 35017773 - 35017815
Alignment:
Q  230 agagggagttttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  35017773 agagggagccttggcgcaacggtaaagttgttgtcatgtgact 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 372
Target Start/End: Original strand, 5450263 - 5450384
Alignment:
Q  252 taaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa-t 350  Q
    ||||||||||||||||||||| ||| ||| |  ||| || ||| |  ||||  ||||||||||||| |||| |||||| ||| ||||| |||||||||      
T  5450263 taaagttgttgtcatgtgactgaaaggtcacgggttcaattcctggaaacaacctcttgtgtaaaaaaacatggtaaggctgcgtacaatacaccaaagg 5450362  T
Q  351 atgggaccccttcccggaccct 372  Q
     ||||||||||||| |||||||    
T  5450363 gtgggaccccttcctggaccct 5450384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 32781392 - 32781324
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctg 373  Q
    ||||||||||||| |||| |||||||||| ||||| ||||||||||  |||||||||||||| |||||||    
T  32781392 ctcttgtgtaaaa-aacagggtaagactgcgtacaatacaccaaatggtgggaccccttcccagaccctg 32781324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 34766333 - 34766390
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||||||||||||||||||||||| | |||| |||||||| |||||| | ||||||    
T  34766333 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaacgggtttcccttt 34766390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 409
Target Start/End: Complemental strand, 39914410 - 39914306
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 403  Q
    ||||||||||||| |||| ||||||  |||||||| |||||| |||  ||||||||||| || ||||||||||| | |||| |||||||| | |||| ||    
T  39914410 ctcttgtgtaaaaaaacagggtaaggatgtgtacaatacaccgaatggtgggacccctt-cctgaccctgcgtatgcgggagctttagtgcatcgggttg 39914312  T
Q  404 cccttt 409  Q
    ||||||    
T  39914311 cccttt 39914306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 8575975 - 8576031
Alignment:
Q  354 ggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    |||||||||||||||||||||||| |||||| |||||||| | | || |||||||||    
T  8575975 ggaccccttcccggaccctgcgtatgtgggagctttagtgcaccaggttgcccttta 8576031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 27573586 - 27573755
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| |||||||||| |  |||| |||||| ||| ||||    
T  27573586 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcattggttcaagtccgggcaacagcctcttgtgtata--aacatggtaaggctgcgtac 27573683  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||| |||  |||||  |||||| ||| |||||| |||||||| | |||| ||||||||    
T  27573684 aatacaccaaatggtggaaccatttcccaaaccctgtgtatgtgggagctttagtgcatcgggttgcccttt 27573755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 36871518 - 36871626
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| ||||||||| |||  ||| |||||| ||| ||||| ||||||||||  ||||||||||||||||| |||||||| | |||| |||||||| | |    
T  36871518 aacagcctcttgtgtgaaa--acagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga-cctgcgtatgcgggagctttagtgcacc 36871614  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  36871615 gggttgcccttt 36871626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 410
Target Start/End: Original strand, 23397742 - 23397900
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| ||||||||||||||   | |||||| ||  ||||| |||||||||    
T  23397742 ggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtgtaaaat---agggtaaggctacgtacaatacaccaaa 23397838  T
Q  350 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    |  |||||||||||| |||||||| | || | |||| || ||||| | |||| |||||||||    
T  23397839 tggtgggaccccttctcggaccctacatatgcgggagctctagtgcaccgggttgcccttta 23397900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 395
Target Start/End: Complemental strand, 24059053 - 24059010
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgta 395  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||    
T  24059053 tgggacccctttccggaccctgcgtatgtgggagctttagtgta 24059010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 24890444 - 24890514
Alignment:
Q  308 ttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    |||| ||||| ||||||||||| |||  |||| |||||||| |  ||||||||||||||||||||||||||    
T  24890444 ttgtctaaaaaaacaaggtaaggctgcatacaatacaccaattggtgggaccccttcccggaccctgcgta 24890514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 26684781 - 26684639
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacag-tctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa 348  Q
    ||||||||||||||||||||| | ||| |||  | |||||||||| |  |||||  ||||||||||||| || | |||||| ||| ||||| || || ||    
T  26684781 ggtaaagttgttgtcatgtgattgaaaggtcaaaggtttaagtcctgaaaacagacctcttgtgtaaaaaaatatggtaaggctgcgtacaatatactaa 26684682  T
Q  349 at-atgggaccccttcccggaccctgcgtaagtgggaacttta 390  Q
    ||  ||||||| ||||||| |||||||||| | |||| |||||    
T  26684681 atggtgggacctcttcccgaaccctgcgtatgcgggagcttta 26684639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 44643488 - 44643658
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||| |||||||||||  |||||||||| ||| ||| | |||| |||| |    || || |||||  |||||| ||||  ||||| ||| |||||    
T  44643488 ttggcgcaatggtaaagttgtcatcatgtgactgaaaggtcacgtgttcaagttctagaaagagcctcttccgtaaaaaaacagagtaaggctgcgtaca 44643587  T
Q  340 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |  |||||||  |||||||||||||| ||||||||||| | |||| | |||||| | |||||||||||||    
T  44643588 atgtaccaaatggtgggaccccttcccagaccctgcgtatgcgggagccttagtgcaccgggctgcccttt 44643658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 13245181 - 13245096
Alignment:
Q  324 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 408  Q
    |||||| ||| ||||||||||| ||||  ||||||||||||||||||| ||| ||   |||| |||||||||| |||| |||||||    
T  13245181 ggtaaggctgcgtacattacactaaatggtgggaccccttcccggaccatgcatatacgggagctttagtgtatcgggttgccctt 13245096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 35010513 - 35010550
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaa 277  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  35010513 ttggtgcaacggtaaagttgttgtcatgtgactgaaaa 35010550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 40579806 - 40579750
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 408  Q
    |||||||||||||||||||||| ||| | |||| |||||||| | |||| |||||||    
T  40579806 tgggaccccttcccggaccctgagtatgcgggagctttagtgcaccgggttgccctt 40579750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 409
Target Start/End: Complemental strand, 28817785 - 28817626
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||| ||    
T  28817785 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacacccaa 28817687  T
Q  350 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  28817686 tggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcatcgggttgcccttt 28817626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 35261644 - 35261814
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| ||| || |  ||||||||||||||||||| |||| ||||||  || ||||    
T  35261644 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagccctggaaacagtctcttgtgtaaaa-aacagggtaaggttgcgtac 35261742  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||| |||||||||||| | |||| |||||||| | |||| ||||||||    
T  35261743 aatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 35261814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 30454265 - 30454097
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   ||||||||||| ||| ||||    
T  30454265 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacaaggtaaggctgcgtac 30454169  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
      ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  30454168 gatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 30454097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 36720772 - 36720899
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  36720772 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 36720870  T
Q  350 ta-tgggaccccttcccggaccctgcgta 377  Q
    |  ||||||||||||||||||||||||||    
T  36720871 tggtgggaccccttcccggaccctgcgta 36720899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 389
Target Start/End: Complemental strand, 24365218 - 24365079
Alignment:
Q  251 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 350  Q
    |||||||||||||||||||||||||| ||| |  ||| ||| ||    ||||| ||||||||||||| | || |||||| ||| | ||| ||||||||||    
T  24365218 gtaaagttgttgtcatgtgactaaaatgtcacgggttcaagccctagaaacagcctcttgtgtaaaaaatcagggtaaggctgcgaacaatacaccaaat 24365119  T
Q  351 a-tgggaccccttcccggaccctgcgtaagtgggaacttt 389  Q
      |||||||||||||||||||||||||| |||||| ||||    
T  24365118 ggtgggaccccttcccggaccctgcgtatgtgggagcttt 24365079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 39461166 - 39460994
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||| |||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| ||||  ||||| ||| ||||    
T  39461166 ttggcgcaactggtaaagttgttgtcatgagactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagagtaaggctgcgtac 39461068  T
Q  339 attacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||  ||||   ||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  39461067 aatacaccaataatggtgagaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 39460994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 12670418 - 12670285
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  12670418 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 12670322  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgc 374  Q
    | ||||||||||  |||||||||||||||||||||||    
T  12670321 aatacaccaaatggtgggaccccttcccggaccctgc 12670285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 409
Target Start/End: Original strand, 12625920 - 12626025
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 403  Q
    ||||||||||||| |||| ||||||||||  |||| ||||||||||  ||||||||| |||||||||||||||| | |||| |||||||| | |||| ||    
T  12625920 ctcttgtgtaaaaaaacagggtaagactgcatacaatacaccaaatggtgggaccccctcccggaccctgcgtatgcgggagctttagtgcaccgggttg 12626019  T
Q  404 cccttt 409  Q
    ||||||    
T  12626020 cccttt 12626025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 2626495 - 2626622
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgt--aaaataacaaggtaagactgtgtacattacacca 347  Q
    ||||||||||||||||||||||  ||| ||| |  ||| |||||| |  ||||| |||||||||  |||| |||| |||||||||| ||||| |||||||    
T  2626495 ggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaaaaacagggtaagactgcgtacaatacacca 2626594  T
Q  348 aat-atgggaccccttcccggaccctgc 374  Q
    ||| ||||||||||||||| ||||||||    
T  2626595 aatgatgggaccccttcccagaccctgc 2626622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 410
Target Start/End: Original strand, 13160669 - 13160837
Alignment:
Q  242 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 340  Q
    |||||||| |||||||||||||||||||||||  || ||| |  ||| ||||||    ||||| |||||||||||||  ||| |||||| ||| |||||     
T  13160669 ggcgcaactggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaa--acagggtaaggctgcgtacaa 13160766  T
Q  341 tacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    ||||||||||  |||||||||||||||||||||||||| | |||| ||| ||||   |||| |||||||||    
T  13160767 tacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcgccgggttgcccttta 13160837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 44530114 - 44530268
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||| ||||||||||||| || ||| |  ||| |||||  |  ||||  ||||||||||||| |||| |||||| ||| ||||    
T  44530114 ttggcgcaactggtaaagttgctgtcatgtgactagaaggtcacgggttcaagtcttggaaacaacctcttgtgtaaaa-aacagggtaaggctgcgtac 44530212  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||||||||  ||||||||||||| |||||||||||| | |||| ||||||||    
T  44530213 aatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagctttagtg 44530268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 44781675 - 44781520
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||||||||||||| |||||| |||  || |  ||| |||||| |  ||||  ||||||||||||| | || |||||| |||||||||    
T  44781675 ttggcgcaacggtaaagttgttgtcacgtgactgaaagttcacgggttcaagtcctggaaacaacctcttgtgtaaaaga-cagggtaaggctgtgtaca 44781577  T
Q  340 ttacaccaaatatg---ggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
     ||||||||| |||   ||||||| |||| ||||||||||| | |||| ||||||||    
T  44781576 atacaccaaaaatgttgggaccccgtcccagaccctgcgtatgcgggagctttagtg 44781520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 20869666 - 20869535
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||||||||    
T  20869666 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgtgtac 20869570  T
Q  339 attacaccaaatatgggaccccttcccggaccctgc 374  Q
    | |||||| ||  || ||||||||||||||||||||    
T  20869569 aatacacc-aaggtgagaccccttcccggaccctgc 20869535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 5135399 - 5135321
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
    ||||| ||||||||||||| || | |||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  5135399 aacagcctcttgtgtaaaa-aagagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 5135321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 377
Target Start/End: Complemental strand, 20284232 - 20284101
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaa-ggtaagactgtgtacattacaccaa 348  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| || || |||||| ||| ||||| ||||||||    
T  20284232 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaaaaaagggtaaggctgcgtacaatacaccaa 20284133  T
Q  349 ata---tgggaccccttcccggaccctgcgta 377  Q
      |   ||||||||||||||||||||||||||    
T  20284132 taatggtgggaccccttcccggaccctgcgta 20284101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 407
Target Start/End: Original strand, 29877119 - 29877227
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| || |||||||||| |||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| | |||||| | |    
T  29877119 aacagccttttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcgttagtgcacc 29877217  T
Q  398 gggctgccct 407  Q
     |||||||||    
T  29877218 aggctgccct 29877227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 410
Target Start/End: Original strand, 17823541 - 17823712
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||  ||| ||| |  ||| |||||| |  ||||| ||||||||||||| | || | |||||||| |||     
T  17823541 ttggcgcaactggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-accaggataagactgcgtaa 17823639  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    | ||||||||||  ||| ||||||||||| ||||||| || |  ||| |||||||| | |||| |||||||||    
T  17823640 aatacaccaaatggtggaaccccttcccgaaccctgcatatgcaggagctttagtgcaccgggttgcccttta 17823712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 18164929 - 18164776
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||| ||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||  |||| ||||||  || ||||    
T  18164929 ttggcgcaaccggtgaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggttgcgtac 18164832  T
Q  339 attacaccaaa-tatgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | |||||||||  ||| ||||  ||||||||||||||||| | |||| ||||||||    
T  18164831 aatacaccaaaggatgtgaccatttcccggaccctgcgtatgcgggagctttagtg 18164776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 45071241 - 45071398
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||| |  || ||| |  ||| |||| | |  ||||| |||||||||||||  ||| |||||| ||| ||||| |||||||||    
T  45071241 ggtaaagttgttgtcatgtgattgtaaggtcacgggttcaagttctggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaa 45071338  T
Q  350 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 408  Q
    |  ||||||||||||||||||| |||||| | |||| ||| |||| | |||| |||||||    
T  45071339 tggtgggaccccttcccggaccttgcgtatgcgggagcttcagtgcaccgggttgccctt 45071398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 6760787 - 6760959
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||| |||||| || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||  ||||    
T  6760787 ttggcgcaactggtaaagttgttgtcatatgactagaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggcttcgtac 6760885  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||  |   |||||||||||| ||||||| || || | |||| |||||||| | |||| ||||||||    
T  6760886 aatacaccaataatggtgggaccccttctcggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 6760959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 377
Target Start/End: Complemental strand, 21070861 - 21070729
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaa--ggtaagactgtgtacattacacca 347  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| || ||  |||||| ||| ||||| |||||||    
T  21070861 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaaaaaaagggtaaggctgcgtacaatacacca 21070762  T
Q  348 aata---tgggaccccttcccggaccctgcgta 377  Q
    |  |   ||||||||||||||||||||||||||    
T  21070761 ataatggtgggaccccttcccggaccctgcgta 21070729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 19729367 - 19729440
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 374  Q
    ||||||||||| |||||||   || |||||| ||||||||| ||||||||||  |||||||||||||||||||||||    
T  19729367 aacagtctcttatgtaaaa---cagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgc 19729440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 348
Target Start/End: Original strand, 26954108 - 26954206
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa 348  Q
    ||||||||||||||||||||| || || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| ||||||||    
T  26954108 ggtaaagttgttgtcatgtgattagaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaaacagggtaaggctgcgtacaatacaccaa 26954206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 20869948 - 20870060
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgta 395  Q
    ||||||||||||||||||| |||| |||||| ||| ||||| ||||||||  |   ||||||||||||| |||||| || || | |||| |||||||| |    
T  20869948 aacagtctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaataatggtgggaccccttccaggaccccgcatatgcgggagctttagtgca 20870046  T
Q  396 acgggctgcccttt 409  Q
     |||| ||||||||    
T  20870047 ccgggttgcccttt 20870060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 29521855 - 29521701
Alignment:
Q  240 ttggcgcaacgg-taaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| | ||||||||||||| |||||||  || ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||| ||||    
T  29521855 ttggcgcaactgataaagttgttgtcgtgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtttaaaa-aacagggtaaggctgcgtac 29521757  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||||||||  ||||| ||| |||| ||||||||||| | |||| ||||||||    
T  29521756 aatacaccaaatggtgggaacccatcccagaccctgcgtatgcgggagctttagtg 29521701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 408
Target Start/End: Complemental strand, 42083868 - 42083699
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||||||||| ||||||||| |||||| ||| ||| |  ||| |||||| |  ||||| || |||||||||| ||   || ||| ||| |||||    
T  42083868 ttggcgcaacggtaaaattgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagccttttgtgtaaaa-aatggggcaaggctgcgtaca 42083770  T
Q  340 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 408  Q
     || ||||||    ||||||||||||||| |||||| ||| |||||| |||||||| |  |||||||||||    
T  42083769 gtataccaaaatggtgggaccccttcccgaaccctgtgtacgtgggagctttagtgcattgggctgccctt 42083699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 5689662 - 5689750
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    ||||||||||||| | || |||||| ||| ||||| ||||||||||  ||| ||||||||||| ||| |||||| |||||| ||||||||    
T  5689662 ctcttgtgtaaaa-agcagggtaaggctgcgtacaatacaccaaatggtggaaccccttcccgaaccatgcgtatgtgggagctttagtg 5689750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 409
Target Start/End: Original strand, 10857859 - 10857964
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 403  Q
    ||||||||||||| |||| |||||| ||| | ||| |||||||| |  ||||||| ||||| ||||| |||||| | |||| |||||||| | |||| ||    
T  10857859 ctcttgtgtaaaaaaacagggtaaggctgcgcacaatacaccaattggtgggaccacttcctggaccttgcgtatgcgggagctttagtgcaccgggttg 10857958  T
Q  404 cccttt 409  Q
    ||||||    
T  10857959 cccttt 10857964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 25250498 - 25250659
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||  || ||| |||||| |||||| |  ||||| || |||||||||| || | |||| | ||| ||||| ||||||||     
T  25250498 ggtaaagttgttgtcatgtgactggaaggtcacatgttcaagtcctggaaacagcctattgtgtaaaa-aatagggtatggctgcgtacaatacaccaat 25250596  T
Q  350 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |   ||||||||||||||| |||| || || | ||||  ||||||| | |||| ||||||||    
T  25250597 aatggtgggaccccttcccgaaccccgcatatgcgggagatttagtgcaccgggttgcccttt 25250659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 40444845 - 40444901
Alignment:
Q  353 gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||||||| |||||||||||||| || ||| |||||||| | || ||||||||||    
T  40444845 gggaccccttgccggaccctgcgtatgttggagctttagtgcaccgagctgcccttt 40444901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 38879546 - 38879718
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||| ||||    
T  38879546 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaaggctgcgtac 38879644  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  38879645 aatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 38879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 43334167 - 43334339
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||| ||||||||| |||| |||||| ||| ||||    
T  43334167 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcctgtgtaaaaaaacagggtaaggctgcgtac 43334266  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||| |   |||||||||||||||||||||||| | | |||| |||||||| | |||| ||||||||    
T  43334267 aatacaccaaaaatggtgggaccccttcccggaccctgcg-atgcgggagctttagtgcaccgggttgcccttt 43334339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 27328728 - 27328870
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||||||||||||||||| |||| |||||| ||| ||||| ||||||||     
T  27328728 ggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagtctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaat 27328826  T
Q  350 ta---tgggaccccttcccggaccctgcgtaagtgggaacttta 390  Q
     |   ||||||||||||||| |||||||||| | |||| |||||    
T  27328827 aatggtgggaccccttcccgaaccctgcgtatgcgggagcttta 27328870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 3771307 - 3771474
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    |||||||||| |||| |||||| ||| |||||| ||| ||| || |||||||||  |  ||||||||   |||||||| |||| |||||| ||||| |||    
T  3771307 ttggcgcaacagtaatgttgttctcacgtgactgaaaggtcacaggtttaagtcatgtaaacagtct---gtgtaaaaaaacagggtaaggctgtgaaca 3771403  T
Q  340 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
     |||||||| |  |||||||||||||||||| ||| ||| |||||| |||||||| | |||||||||||||    
T  3771404 atacaccaattggtgggaccccttcccggactctgtgtatgtgggagctttagtgcaccgggctgcccttt 3771474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 24448855 - 24449025
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| || |||||||||| || | |||||| ||| ||||    
T  24448855 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagccttttgtgtaaaa-aatagggtaaggctgcgtac 24448953  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  |||||||||||||||||||||||||| |  ||| |||||||| | |||| ||||||||    
T  24448954 aatacaccaaatggtgggaccccttcccggaccctgcgtatgcaggagctttagtgcaccgggttgcccttt 24449025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 29334420 - 29334531
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacacca-aata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaa 396  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||| ||||||| |||  |||||||| ||||||||||||||||| |||||| ||||| || |     
T  29334420 aacagcctcttgtgtaaaa-aacaaggtaaggctgcgtacaatacaccagaatggtgggacccattcccggaccctgcgtatgtgggatctttaatgcac 29334518  T
Q  397 cgggctgcccttt 409  Q
    |||||||||||||    
T  29334519 cgggctgcccttt 29334531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 41014284 - 41014453
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  41014284 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggctgcgtac 41014381  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||| |||||| || || | |||| |||||||| | |||| ||||||||    
T  41014382 aatacaccaaatggtgggaccccttcctggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 41014453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 19143111 - 19142975
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||| |||||| ||||||||| |||||||||| | | || ||| |||||| |  ||||  |||||||||||||  ||| |||||| ||| |||||    
T  19143111 ttggcgcaatggtaaaattgttgtcacgtgactaaaatgccacaggttcaagtcctggaaacaacctcttgtgtaaaa--acagggtaaggctgcgtaca 19143014  T
Q  340 ttacaccaaata-tgggaccccttcccggaccctgcgta 377  Q
     ||||||||||  ||||||||||||||||||| ||||||    
T  19143013 gtacaccaaatggtgggaccccttcccggaccatgcgta 19142975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 410
Target Start/End: Original strand, 1565396 - 1565567
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||  ||| |||||| |  ||||  |||||| |||||| ||||   |||| ||| ||||    
T  1565396 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacaacctcttgagtaaaaaaacatattaaggctgcgtac 1565495  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    | | ||||||||   |||||||||||||||||||||| || |||||| | |||||| | |||| |||||||||    
T  1565496 aatgcaccaaatggcgggaccccttcccggaccctgcatatgtgggagc-ttagtgcaccgggttgcccttta 1565567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 8170152 - 8170019
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||  ||| ||| |  ||| |||||| |  ||||| || ||||||||||   || |||||| ||| ||||    
T  8170152 ttggcgcaactggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagccttttgtgtaaaa---cagggtaaggctgcgtac 8170056  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgc 374  Q
    | ||||||||||  |||||||||||||||||||||||    
T  8170055 aatacaccaaatggtgggaccccttcccggaccctgc 8170019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 209096 - 209019
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaa 317  Q
    |||||||| |||||||||||||||||||||||||||| ||| || ||| |||||| |  ||||  |||||||||||||    
T  209096 ttggcgcagcggtaaagttgttgtcatgtgactaaaaggtcacaagttcaagtcctggcaacaacctcttgtgtaaaa 209019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 16957373 - 16957449
Alignment:
Q  334 tgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  16957373 tgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 16957449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 22187249 - 22187359
Alignment:
Q  239 tttggcgcaacg-gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 337  Q
    |||||||||||  |||||||||||||||| ||||| ||| ||| |  |||||||||| |  ||||| ||||||||||||| |||| | |||||||| |||    
T  22187249 tttggcgcaactagtaaagttgttgtcatttgactgaaaggtcaccggtttaagtcctggaaacagcctcttgtgtaaaa-aacatgataagactgcgta 22187347  T
Q  338 cattacaccaaa 349  Q
    || |||||||||    
T  22187348 caatacaccaaa 22187359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 409
Target Start/End: Original strand, 32703411 - 32703557
Alignment:
Q  261 tgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccc 359  Q
    |||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  ||||||||    
T  32703411 tgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggaccc 32703507  T
Q  360 cttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    ||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  32703508 cttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 32703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 39301089 - 39301234
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||||||||||||||||||||||| ||| ||| ||| |  ||| |||||  | |||||  |||||||||| || |||| ||||||  || ||| |    
T  39301089 ttggcgcaacggtaaagttgttgtcatgttactgaaaggtcacgggttcaagtcttgggaacaacctcttgtgtataa-aacagggtaaggatgcgtata 39301187  T
Q  340 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtggga 384  Q
     | ||||||| |  ||||||||||||||||||||| |||| ||||||    
T  39301188 atgcaccaaaaaggtgggaccccttcccggaccctccgtatgtggga 39301234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 35710278 - 35710446
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||| ||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||||   | |||||| ||| || |    
T  35710278 ttggcgcaactggtaaagttgttgtcatgtaactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaat---agggtaaggctgcgttc 35710374  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||||||| | ||| || | |||| || ||||| | |||| ||||||||    
T  35710375 aatacaccaaatggtgggaccccttcccggaacatgcatatgcgggagctctagtgcaccgggttgcccttt 35710446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 43574631 - 43574723
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttag 391  Q
    |||| ||||||||||| || |||| |||||| ||| ||||| || |||||||  |||||||||||||||||||||||||| | |||| ||||||    
T  43574631 aacaatctcttgtgtagaa-aacagggtaaggctgcgtacaatataccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttag 43574723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 16880757 - 16880646
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||  || |||| ||||||||||| |||||| | |||| |||||||| | |    
T  16880757 aacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtgtgaccacttcccggaccatgcgtatgcgggagctttagtgcacc 16880659  T
Q  398 gggctgcccttta 410  Q
    ||| | |||||||    
T  16880658 gggtttcccttta 16880646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 23974746 - 23974778
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    |||||||||||||||||||||||||||||||||    
T  23974746 ttggcgcaacggtaaagttgttgtcatgtgact 23974778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 31694284 - 31694245
Alignment:
Q  233 gggagttttggcgcaacggtaaagttgttgtcatgtgact 272  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  31694284 gggagttttggcgcaacagtaaagttgttgtcacgtgact 31694245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 39079935 - 39079904
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgac 271  Q
    ||||||||||||||||||||||||||||||||    
T  39079935 ttggcgcaacggtaaagttgttgtcatgtgac 39079904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 406
Target Start/End: Original strand, 7368423 - 7368528
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| |||||||||||||   || |||||| ||| ||||| |||||||| |  ||||||||||||||||||||||| || |||||| || ||||| | |    
T  7368423 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaattggtgggaccccttcccggaccctgcatatgtgggagctctagtgcacc 7368519  T
Q  398 gggctgccc 406  Q
    ||| |||||    
T  7368520 gggttgccc 7368528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 19093894 - 19093948
Alignment:
Q  355 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    ||||||| ||||||||||||||| || ||| |||||||| | |||||||||||||    
T  19093894 gacccctacccggaccctgcgtatgttggagctttagtgcaccgggctgcccttt 19093948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 30877621 - 30877563
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    ||||||||||||||||||||||| || |||||| || ||||| | |||| |||||||||    
T  30877621 tgggaccccttcccggaccctgcatatgtgggagctctagtgcaccgggttgcccttta 30877563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 7097869 - 7097759
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| |||||||||||||  ||| ||||||  || ||||| ||||||||||  || |||||||||||| |||||||||| | |||| |||||||| | |    
T  7097869 aacagcctcttgtgtaaaa--acagggtaaggttgcgtacaatacaccaaatggtgagaccccttcccgaaccctgcgtatgcgggagctttagtgcacc 7097772  T
Q  398 gggctgcccttta 410  Q
      |||||||||||    
T  7097771 atgctgcccttta 7097759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 20135629 - 20135703
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata---tgggaccccttcccggaccc 371  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||| ||||||||  |   ||||||||||||||||||||    
T  20135629 aacagcctcttgtgtaaaa-aacaaggtaaggctgcgtacaatacaccaataatggtgggaccccttcccggaccc 20135703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 25622538 - 25622579
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  25622538 tgggaccccttcccggaccctgcgtatgcgggagctttagtg 25622579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 1354925 - 1354757
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  1354925 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcactggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 1354829  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  1354828 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 1354757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 1346929 - 1347097
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| | |||||||||||   || |||||| ||| ||||    
T  1346929 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagccacttgtgtaaaa---cagggtaaggctgcgtac 1347025  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  1347026 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 1347097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 12222087 - 12221914
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||  |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  12222087 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcttggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 12221989  T
Q  339 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaac-tttagtgtaacgggctgcccttt 409  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| | ||||||| | |||| ||||||||    
T  12221988 aatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagcttttagtgcaccgggttgcccttt 12221914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 409
Target Start/End: Complemental strand, 29356009 - 29355855
Alignment:
Q  257 ttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata---tg 353  Q
    |||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||| | |||| |||||| ||| ||||| ||||||||  |   ||    
T  29356009 ttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaga-aacagggtaaggctgcgtacaatacaccaataatggtg 29355911  T
Q  354 ggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  29355910 ggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 29355855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 3815247 - 3815109
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| || |||||||||| || | |||| ||||| ||||    
T  3815247 ttggcgcaactggtaaagttgttgtcatgtgactgaaatgtcacgggttcaagtcctggaaacagactattgtgtaaaa-aatatggtacgactgcgtac 3815149  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgta 377  Q
    | ||||||||||  |||||||| |||||| ||||| ||||    
T  3815148 aatacaccaaatggtgggaccctttcccgaaccctacgta 3815109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 9161098 - 9161227
Alignment:
Q  249 cggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa 348  Q
    |||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||| ||||||||||||  ||||  ||||| ||| ||||| |||| |||    
T  9161098 cggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaa--aacagagtaaggctgcgtacaatacatcaa 9161195  T
Q  349 ata---tgggaccccttcccggaccctgcgta 377  Q
      |   |||||||||||| |||||||||||||    
T  9161196 taatggtgggaccccttctcggaccctgcgta 9161227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 393
Target Start/End: Complemental strand, 32728314 - 32728173
Alignment:
Q  251 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 350  Q
    |||||||||||||||||||||| ||| ||| ||  || ||||   |  ||||  ||||| ||||||| |||| |||||||||||||||| || |||||||    
T  32728314 gtaaagttgttgtcatgtgactgaaaggtcacagattcaagttttggaaacaacctcttatgtaaaa-aacagggtaagactgtgtacaatataccaaat 32728216  T
Q  351 atgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    |  || ||| ||||| |||||| |||| | |||||||||||||    
T  32728215 agtggtccctttcccagaccctacgtatgcgggaactttagtg 32728173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 12885991 - 12886048
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||||||||||| ||||||||||| |||||| |||||||| | |||| ||||||||    
T  12885991 tgggaccccttcccagaccctgcgtatgtgggagctttagtgcaccgggttgcccttt 12886048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 13905148 - 13905012
Alignment:
Q  240 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 339  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |  | | |||||| |  |||   ||||||||||||| |||| |||||| |||  ||||    
T  13905148 ttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcacgggctcaagtcctgaaaacgacctcttgtgtaaaa-aacagggtaaggctgcataca 13905050  T
Q  340 ttacaccaaatatgggaccccttcccggaccctgcgta 377  Q
     | ||||||||   |||||| |||||| ||||||||||    
T  13905049 attcaccaaatggtggaccctttcccgaaccctgcgta 13905012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 26097185 - 26097293
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| |||||||||||||   || |||||| ||| ||||| |||||||||| | |||||||||||||||||||||| || | |||| || ||||| | |    
T  26097185 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatgaagggaccccttcccggaccctgcatatgcgggagctctagtgcacc 26097281  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  26097282 gggttgcccttt 26097293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 10734962 - 10734904
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
    |||| ||||||||||||||||||||| | |||| |||||||  | ||||||||||||||    
T  10734962 tgggcccccttcccggaccctgcgtatgcgggagctttagtccaccgggctgcccttta 10734904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 6808473 - 6808530
Alignment:
Q  352 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |||||||||||||||||||||| ||| | |||| |||||||| | |||| ||||||||    
T  6808473 tgggaccccttcccggaccctgtgtatgcgggagctttagtgcaccgggttgcccttt 6808530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 20400643 - 20400743
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||| |||||||||||||||||| ||| ||| || ||| ||||   |  |||| |||||||||||||| |||| |||||||||| ||||| ||||| |||    
T  20400643 ggtatagttgttgtcatgtgactgaaaggtcacaggttcaagttatggaaacaatctcttgtgtaaaa-aacagggtaagactgcgtacagtacactaaa 20400741  T
Q  350 ta 351  Q
    ||    
T  20400742 ta 20400743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 25557750 - 25557858
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| |||||||||||||   || |||||| ||| ||||| |||||||||| | || ||||||||||||||||||| || | |||| || ||||| | |    
T  25557750 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatgaaggaaccccttcccggaccctgcatatgcgggagctctagtgcacc 25557846  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  25557847 gggttgcccttt 25557858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 6024258 - 6024332
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa--at-atgggaccccttcccggaccc 371  Q
    ||||| ||||||||||||| |||| |||||||||| ||||| ||||||||  || |||||||| ||||||||||||    
T  6024258 aacagcctcttgtgtaaaa-aacatggtaagactgcgtacaatacaccaataatgatgggacctcttcccggaccc 6024332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 13193 - 13024
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||| ||||||  |||||||||| ||| ||||    
T  13193 ttggcgcaaccggtaaagttgttgtcatgtgactgaaaggtcaccggttcaagtcctggaaacagcctcttgcgtaaaa--acaaggtaaggctgcgtac 13096  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | |||||| |||  |||||||||||||| ||||||||||| | |||  |||||||| | |||| ||||||||    
T  13095 aatacaccgaatggtgggaccccttcccagaccctgcgtatgcgggggctttagtgcaccgggttgcccttt 13024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 10207 - 10085
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   ||||  ||||||||| ||||| |||||||||    
T  10207 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagagtaagactgcgtacaatacaccaaa 10111  T
Q  350 ta-tgggaccccttcccggaccctgc 374  Q
    || |||||||||||||||||||||||    
T  10110 tagtgggaccccttcccggaccctgc 10085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 20535 - 20413
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   ||||  ||||||||| ||||| |||||||||    
T  20535 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagagtaagactgcgtacaatacaccaaa 20439  T
Q  350 ta-tgggaccccttcccggaccctgc 374  Q
    || |||||||||||||||||||||||    
T  20438 tagtgggaccccttcccggaccctgc 20413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 30544 - 30712
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||| | ||| ||||    
T  30544 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcaccggttcaagtcctggaaacagcctcttgtgtaa---aacagggtagggctgcgtac 30640  T
Q  339 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  30641 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 30712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 46807 - 46966
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||||||||||||||||||||| || ||| |  ||| |||| | |  ||||  ||||||||||||| || | ||||||  || ||||| |||||||||    
T  46807 ggtaaagttgttgtcatgtgactagaaggtcacgggttcaagtgctggaaacaacctcttgtgtaaaa-aatagggtaaggttgcgtacaatacaccaaa 46905  T
Q  350 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 409  Q
    |  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  46906 tggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 46966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 24937 - 24788
Alignment:
Q  240 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 338  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| |||||     ||||| ||||||||||||| |||| |||||| ||| ||||    
T  24937 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtc-----aacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 24844  T
Q  339 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    |  |||||||||  ||||||||||||||| |||||||||| | |||| ||||||||    
T  24843 aacacaccaaatggtgggaccccttcccgaaccctgcgtatgcgggagctttagtg 24788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 410
Target Start/End: Original strand, 58953 - 59115
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    |||||| || ||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||||||| ||||| |||||||||    
T  58953 ggtaaacttattgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaagactgcgtacaatacaccaaa 59051  T
Q  350 tatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 410  Q
     ||||   ||||||||||| ||| ||||||| | |||| |||||||| | |||| |||||||||    
T  59052 aatggtgggaccccttcccagactctgcgtatgcgggagctttagtgcatcgggttgcccttta 59115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 393
Target Start/End: Complemental strand, 1744 - 1603
Alignment:
Q  250 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 349  Q
    ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||  |||||||||||||   || | |||| |||  |||| |||||||||    
T  1744 ggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctgaaaacaacctcttgtgtaaaa---caggataaggctgcatacaatacaccaaa 1648  T
Q  350 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    | ||||||||||||||||||||| ||||| | |||| ||||||||    
T  1647 tgatgggaccccttcccggacccggcgtatgcgggagctttagtg 1603  T

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Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 10841 - 10929
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    ||||||||||||| |||| |||| | ||| || || ||||||||||  |||||||||||||||||||||||||| | |||| ||||||||    
T  10841 ctcttgtgtaaaa-aacagggtagggctgcgtccaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 10929  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 48742 - 48634
Alignment:
Q  299 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 397  Q
    ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |    
T  48742 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcacc 48646  T
Q  398 gggctgcccttt 409  Q
    ||| ||||||||    
T  48645 gggttgcccttt 48634  T

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Target: scaffold0954 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 3575 - 3647
Alignment:
Q  305 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgta 377  Q
    |||||||||||||||  |||||||| ||| ||| | |||||| ||| |||||||||||||||| ||||||||||    
T  3575 ctcttgtgtaaaatat-aaggtaaggctgcgtataatacaccgaatgatgggaccccttcccgaaccctgcgta 3647  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 72974 - 72883
Alignment:
Q  302 agtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 393  Q
    |||||||||||||||| |||| |||||| |||  |||| ||||||||||  | | ||||||||||||| |||||||| | |||| ||||||||    
T  72974 agtctcttgtgtaaaa-aacacggtaaggctgcctacaatacaccaaatggtagtaccccttcccggaacctgcgtatgcgggagctttagtg 72883  T

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