View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19491_high_1 (Length: 421)
Name: NF19491_high_1
Description: NF19491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19491_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 101 - 401
Target Start/End: Original strand, 14511120 - 14511420
Alignment:
| Q |
101 |
gtagaattatcccgcacgaacgcaggaagctcaatctgaccattacgaatagccacgtgaactgtctcaaacaaaactccaccgaaatctgcaaagtatc |
200 |
Q |
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| T |
14511120 |
gtagaattatcccgcacgaacacaggaagctcaatctgaccattacgaatagccatgtgaactgtctcaaacaaaactccaccgaaatctgcaaagtatc |
14511219 |
T |
|
| Q |
201 |
aactaagggagcacctaactagttgtccatccaaaaattaatcttctccccattaccgacaatccaaactgaattatccagcaccatgccaaccataggt |
300 |
Q |
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| T |
14511220 |
aactaagggagcacctaaatagttgtccgtccaaaaattaatcttctccccattaccgacaatccaaactgaattatccagcaccatgccaaccatagat |
14511319 |
T |
|
| Q |
301 |
ttcatgcccaaccaaaccgacgatctgaaataatgagtaataggccgcccataagagaaataccgagaacgaaggagacattcccattgggagtcctctg |
400 |
Q |
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| T |
14511320 |
ttcatgcccaaccaaaccgaagatctgaaataatgagtaataggccgccaataagagaaataccgagaacaaaggagacattcccattgggagtcctctg |
14511419 |
T |
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| Q |
401 |
t |
401 |
Q |
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| |
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| T |
14511420 |
t |
14511420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 54189104 - 54189027
Alignment:
| Q |
12 |
tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattgttct |
89 |
Q |
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| T |
54189104 |
tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcatcgaaattgttct |
54189027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 8570109 - 8570186
Alignment:
| Q |
12 |
tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattgttct |
89 |
Q |
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| T |
8570109 |
tcatcagtttcatttcaatcacactcacatcttcatcacaatcgctcctcttcgcaatcccttcatcgaaattgttct |
8570186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 3368197 - 3368120
Alignment:
| Q |
12 |
tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattgttct |
89 |
Q |
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| T |
3368197 |
tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcatcgaaattgttct |
3368120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 9891846 - 9891773
Alignment:
| Q |
12 |
tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattg |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
9891846 |
tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcttcttcacaatcccttcatcgaaattg |
9891773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 28696069 - 28696146
Alignment:
| Q |
12 |
tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattgttct |
89 |
Q |
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| T |
28696069 |
tcatcagtttcatttcaatcacactcacatcttcatcacaatcgctcctcttcgcaatcccttcatcgaaattgttct |
28696146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 14272003 - 14271944
Alignment:
| Q |
106 |
attatcccgcacgaacgcaggaagctcaatctgaccattacgaatagccacgtgaactgt |
165 |
Q |
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|||||||||||| || ||| ||||||||||||||||||| ||||||||| |||||||| |
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| T |
14272003 |
attatcccgcacaaaagcaagaagctcaatctgaccattgtgaatagccatttgaactgt |
14271944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 15143382 - 15143423
Alignment:
| Q |
231 |
ccaaaaattaatcttctccccattaccgacaatccaaactga |
272 |
Q |
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|||||||||||||||||| ||| |||| |||||||||||||| |
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| T |
15143382 |
ccaaaaattaatcttctcaccagtaccaacaatccaaactga |
15143423 |
T |
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