View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19492_low_2 (Length: 648)
Name: NF19492_low_2
Description: NF19492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19492_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 20 - 641
Target Start/End: Complemental strand, 31652322 - 31651701
Alignment:
| Q |
20 |
gtgcttctatgtgaaggagaagacattgatccatcatggtacgaggaagacacatcatgtctttctcaagaggaattagaagaaataagaagactacatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652322 |
gtgcttctatgtgaaggagaagacattgatccatcatggtacgaggaagacacatcatgtctttctcaagaggaattagaagaaataagaagactacatg |
31652223 |
T |
|
| Q |
120 |
tgagtgacacatcaattgacaaagaaaaagattcaattgaattagcactagccaaactttgtcttgaaagaaatattccttacttgggaatttgtagagg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652222 |
tgagtgacacatcaattgacaaagaaaaagattcaattgaattagcactagccaaactttgtcttgaaagaaatattccttacttgggaatttgtagagg |
31652123 |
T |
|
| Q |
220 |
gtcacaactcctaaatgtggcatgtggaggtactttatatcaagatataggaaaagagctttcaaacaagggtttagaagagagtgaaatggtgatgcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652122 |
gtcacaactcctaaatgtggcatgtggaggtactttatatcaagatataggaaaagagctttcaaacaagggtttagaagagagtgaaatggtgatgcat |
31652023 |
T |
|
| Q |
320 |
attaactatgatgattatgatggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaagatgataaaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652022 |
attaactatgatgattatgatggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaagatgataaaa |
31651923 |
T |
|
| Q |
420 |
tggacattttggttaatagctatcatcatcaaggtgttaagagacttgcacaacgttttgttccaatggcttttgctcctgatggtttgattgaagggtt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31651922 |
tggacattttggttaatagctatcatcatcaaggtgttaagagacttgcacagcgttttgttccaatggcttttgctcctgatggtttgattgaagggtt |
31651823 |
T |
|
| Q |
520 |
ttatgaccctgatgcttataatccagaagagggtaagtttattatgggattgcagtttcatcccgagcgtatgaggaaagctgattcagatgaatttgat |
619 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31651822 |
ttatgaccctgatgcttataatccagaagagggtaagtttattatgggattgcagtttcatcccgagcggatgaggaaagctgattcagatgaatttgat |
31651723 |
T |
|
| Q |
620 |
tatccgggatgcccctatgctt |
641 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
31651722 |
tatccgggatgcccctttgctt |
31651701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 311 - 638
Target Start/End: Original strand, 219172 - 219502
Alignment:
| Q |
311 |
gtgatgcatattaactatgatgattatgatggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaag |
410 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| | || |||||| |||| ||||||||| | |||||||||||||||||||| || |
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| T |
219172 |
gtgatgcatataaactatgatgattatgatggtcatagacatgttattaaggttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaa |
219271 |
T |
|
| Q |
411 |
atgataaaatggac---attttggttaatagctatcatcatcaaggtgttaagagacttgcacaacgttttgttccaatggcttttgctcctgatggttt |
507 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
219272 |
atgaaggaatggatgagattttggttaatagctatcatcatcaaggggttaagagattggcacaacgttttgttccaatggcttttgctaatgatggttt |
219371 |
T |
|
| Q |
508 |
gattgaagggttttatgaccctgatgcttataatccagaagagggtaagtttattatgggattgcagtttcatcccgagcgtatgaggaaagctgattca |
607 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||| || ||||| |
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| T |
219372 |
aattgaagggttttatgacccttatgcttataatccagaagagggtaagtttattatgggtttgcaatttcaccctgagcgtatgagaaaacctaattca |
219471 |
T |
|
| Q |
608 |
gatgaatttgattatccgggatgcccctatg |
638 |
Q |
| |
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||||| |||||||| || |||||||| |||| |
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| T |
219472 |
gatgattttgattaccctggatgcccatatg |
219502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 218893 - 219128
Alignment:
| Q |
23 |
cttctatgtgaaggagaagacattgatccatcatggtacgaggaaga---cacatcatgt---ctttctcaagaggaattagaagaaataagaagactac |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |||| |||| ||||| ||||| || || || ||||||||||| | || || | |
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| T |
218893 |
cttctatgtgaaggagaagacatagatccttcatggtacgaacaagataacacaacatgtaatctttcacatgaagagttagaagaaatcaaaaagcttc |
218992 |
T |
|
| Q |
117 |
atgtgagtgacacatcaattgacaaagaaaaagattcaattgaattagcactagccaaactttgtcttgaaagaaatattccttacttgggaatttgtag |
216 |
Q |
| |
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|| ||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
218993 |
attcaagtgacacaaacattgacaaagaaaaagattcaattgaattaatcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtag |
219092 |
T |
|
| Q |
217 |
agggtcacaactcctaaatgtggcatgtggaggtac |
252 |
Q |
| |
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||| |||||| |||| ||||| |||||||||||||| |
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| T |
219093 |
aggttcacaagtccttaatgttgcatgtggaggtac |
219128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 377 - 597
Target Start/End: Original strand, 49630519 - 49630739
Alignment:
| Q |
377 |
cctttgcatcattggtttaaggattctttggaagatgataaaatggacattttggttaatagctatcatcatcaaggtgttaagagacttgcacaacgtt |
476 |
Q |
| |
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||||||||| ||||||||||||| ||||| | |||||| |||||| | || |||| ||||| || || ||||| |||||||||||||||||| | | | |
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| T |
49630519 |
cctttgcatgattggtttaaggactcttttgtagatgacaaaatgcagatcatggtgaatagttaccaccatcagggtgttaagagacttgcagagagat |
49630618 |
T |
|
| Q |
477 |
ttgttccaatggcttttgctcctgatggtttgattgaagggttttatgaccctgatgcttataatccagaagagggtaagtttattatgggattgcagtt |
576 |
Q |
| |
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||||||||||||| |||||||| ||||||||| ||||||| ||||| | || || ||| ||||| |||||||| |||||||||||||| | || || |
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| T |
49630619 |
ttgttccaatggcatttgctccagatggtttggttgaaggattttacaatccaaataattacaatcctgaagagggaaagtttattatgggccttcaatt |
49630718 |
T |
|
| Q |
577 |
tcatcccgagcgtatgaggaa |
597 |
Q |
| |
|
|||||| ||| | |||||||| |
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|
| T |
49630719 |
tcatccagagagaatgaggaa |
49630739 |
T |
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Back To:
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