View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19492_low_3 (Length: 502)
Name: NF19492_low_3
Description: NF19492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19492_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 5231467 - 5230988
Alignment:
| Q |
17 |
agtacacatgcgcctaagattacattaacnnnnnnnnnttaaactaagcttcaataaagtaacaattttggaccataatcttatcatgaactaagtcata |
116 |
Q |
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|||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231467 |
agtacacatgtgcctaagattacattaacaaaaaaaaatcaaactaagcttcaataaagtaacaattttggaccataatcttatcatgaactaagtcata |
5231368 |
T |
|
| Q |
117 |
gactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231367 |
gactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttca |
5231268 |
T |
|
| Q |
217 |
aatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggttgtaactcaaaccatgaaacaatttaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5231267 |
aatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggttataactcaaaccatgaaacaatttaaa |
5231168 |
T |
|
| Q |
317 |
ccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5231167 |
ccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttctaccaaaattagttcctccatggt |
5231068 |
T |
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| Q |
417 |
actacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatcagatcttagaattatt |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
5231067 |
actacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatgagatcttagaagtatt |
5230988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 366
Target Start/End: Complemental strand, 7346105 - 7346067
Alignment:
| Q |
328 |
accatattcatcaataggagcatcataatcatagcttgt |
366 |
Q |
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| T |
7346105 |
accatattcatcaattggagcatcatagtcatagcttgt |
7346067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 324 - 419
Target Start/End: Complemental strand, 17126716 - 17126621
Alignment:
| Q |
324 |
gcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
419 |
Q |
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|||||||||||||||| ||||||||||||||||| || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| |
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| T |
17126716 |
gcataccatattcatcgataggagcatcataatcgtaactcgtggcaatgaaaaggccagaagatgttcttccaaaattagttcctccatggtact |
17126621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 327 - 419
Target Start/End: Original strand, 42988695 - 42988787
Alignment:
| Q |
327 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
419 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||| ||||| ||| |||||| || ||||| ||||||||| ||||||||||| |||| |
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| T |
42988695 |
taccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatttgttcctccatgatact |
42988787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 17126925 - 17126793
Alignment:
| Q |
118 |
actttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaa |
217 |
Q |
| |
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||||||||||||||||||| |||| |||||| ||||| ||||| ||||| | ||||||| ||| ||||| ||||||||||||||||||| | | | |
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| T |
17126925 |
actttacctcaaggttttt---tccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttag |
17126829 |
T |
|
| Q |
218 |
atggctccattttggttcatttggaagtcctaatat |
253 |
Q |
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||| | ||||||||||||| || ||||||| |||| |
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| T |
17126828 |
atgcccccattttggttcacttataagtcctgatat |
17126793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 5452968 - 5452874
Alignment:
| Q |
325 |
cataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
419 |
Q |
| |
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|||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| ||||| |||| |
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| T |
5452968 |
cataccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccaccagcggttcttccaaaatttgttccaccatgatact |
5452874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 52647440 - 52647347
Alignment:
| Q |
327 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
420 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| | ||| || |||| | || || ||| |||||||| ||||||||||||||||| |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtacta |
52647347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 22014418 - 22014515
Alignment:
| Q |
323 |
tgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
420 |
Q |
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||||||||||| |||||||| || |||||||||||||| || || | ||| ||| | |||| | |||||||||||| ||||| |||||||||||||| |
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| T |
22014418 |
tgcataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtacta |
22014515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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