View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19492_low_4 (Length: 326)
Name: NF19492_low_4
Description: NF19492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19492_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 47101854 - 47102164
Alignment:
| Q |
1 |
ctagattagattggaatggaaagaaaagaaacttacaaaagtgggtgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaact |
100 |
Q |
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| T |
47101854 |
ctagattagattggaatggaaagaaaagaaacttacaaaagtgggtgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaact |
47101953 |
T |
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| Q |
101 |
tctttgattgaaccatgattgcaaagtgggttgttgtgcactgcaaagagatatggaaggacaaagttcagagggaacagaatagttagatataaaggga |
200 |
Q |
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| T |
47101954 |
tctttgattgaaccatgattgcaaagtgggttgttgtgcactgcaaagagatatggaaggacaaagttcagagggaacagaatagttagatataaaggga |
47102053 |
T |
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| Q |
201 |
cggaggcaagtgactgattaagtgtacgtacactgtcggcgatcgaactaaaagattaactcaaagtttagccagtacaacaaactattaaacgttttca |
300 |
Q |
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| T |
47102054 |
tggaggcaagtgactgattaagtgtacgtacactgtcggcgatcgaactaaaagattaactcaaagtttagccagtacaacaaactattaaacgttttca |
47102153 |
T |
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| Q |
301 |
cctaaacaagt |
311 |
Q |
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| T |
47102154 |
cctaaacaagt |
47102164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 2429372 - 2429435
Alignment:
| Q |
46 |
tgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgatt |
109 |
Q |
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| T |
2429372 |
tgacgaatctccgagacccaagagccccaatggcgttgcctaacacctctgaatttctttgatt |
2429435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 44649210 - 44649281
Alignment:
| Q |
46 |
tgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgattgaaccatg |
117 |
Q |
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| T |
44649210 |
tgacgaatctcagagacccaagagccccaatggcgttgcctgacacctctgaacttctttgaatgtaccatg |
44649281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 49532400 - 49532337
Alignment:
| Q |
43 |
gggtgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttg |
106 |
Q |
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| T |
49532400 |
gggtggcgaatttctgacacccaagagccccactggcgctgcctgactcctctgaacttctttg |
49532337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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