View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19493_high_1 (Length: 805)
Name: NF19493_high_1
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19493_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 767; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 14 - 788
Target Start/End: Complemental strand, 42144806 - 42144032
Alignment:
| Q |
14 |
agacatttgacctctttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42144806 |
agacatttgacctctttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacagg |
42144707 |
T |
|
| Q |
114 |
ctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42144706 |
ctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttat |
42144607 |
T |
|
| Q |
214 |
agatatgtttcagttcctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggttccttataataagagtcaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42144606 |
agatatgtttcagttcctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggttccttataataagagtcaaa |
42144507 |
T |
|
| Q |
314 |
ctcacccagcagcattagtcaaagaaaaatatggtatttcaaaatgggaactatttaaggcatgcttttcaaaagaatggcttcttatgaagaggaatgc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42144506 |
ctcacccagcagcattagtcaaagaaaaatatggtatttcaaaatgggaactatttaaggcatgcttttcaaaggaatggcttcttatgaagaggaatgc |
42144407 |
T |
|
| Q |
414 |
ttttgtttatgtgttcaaaacaacacagatagcaatcatgtctgttattacttttactgtgttctttagaacaaagatgccggttggtactgttcaagat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42144406 |
ttttgtttatgtgttcaaaacaacacagatagcaatcatgtctgttattacttttactgtgttctttagaacaaagatgccggttggtactgttcaagat |
42144307 |
T |
|
| Q |
514 |
ggacaaaaattctacggtgcattattcttcactctgataaatgtgatgtttaatgggttggcagaagtatacatgacagttgctaggcttcctgtgttcc |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42144306 |
ggacaaaaattctacggtgcattattcttcactctgataaatgtgatgtttaatgggttggcagaagtatacatgacagttgctaggcttcctgtgttcc |
42144207 |
T |
|
| Q |
614 |
acaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcctttttggaatctttgatatggat |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42144206 |
acaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttagggtcccgatctcctttttggaatctttgatatggat |
42144107 |
T |
|
| Q |
714 |
tgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatcaactatat |
788 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42144106 |
tgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatcaactatat |
42144032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 14 - 777
Target Start/End: Complemental strand, 42175925 - 42175162
Alignment:
| Q |
14 |
agacatttgacctctttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacagg |
113 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42175925 |
agacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacggg |
42175826 |
T |
|
| Q |
114 |
ctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttat |
213 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42175825 |
ctttaggtgcccagagagaaaatgtgttgctgatttcttacaagaagtaacatccaagaaagaccaacaacaatactggtttagaagagatgaaccttat |
42175726 |
T |
|
| Q |
214 |
agatatgtttcagttcctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggttccttataataagagtcaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42175725 |
agatatgtttcagttcctgaattttttgagttctttcattcatttcatattggagaggaaattgcggcagagattaaggttccttataataagagtcaaa |
42175626 |
T |
|
| Q |
314 |
ctcacccagcagcattagtcaaagaaaaatatggtatttcaaaatgggaactatttaaggcatgcttttcaaaagaatggcttcttatgaagaggaatgc |
413 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
42175625 |
cccacccagctgcattagtgaaagaaaaatatggtatttcaagttggaaagtatttaaggcatgcttttcaaaggaatggcttcttatgaaaaggaatgc |
42175526 |
T |
|
| Q |
414 |
ttttgtttatgtgttcaaaacaacacagatagcaatcatgtctgttattacttttactgtgttctttagaacaaagatgccggttggtactgttcaagat |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42175525 |
ttttgtttatgtgttcaaaacaacacagatagcaatcatgtctattattacttttactgtgttctttagaacaaaaatgccggttggtactgttcaagat |
42175426 |
T |
|
| Q |
514 |
ggacaaaaattctacggtgcattattcttcactctgataaatgtgatgtttaatgggttggcagaagtatacatgacagttgctaggcttcctgtgttcc |
613 |
Q |
| |
|
|||||||||||| | |||||||||||||| || |||||||||||||||| |||||| |||||||| ||| |||||||||| |||||| ||||||||| |
|
|
| T |
42175425 |
ggacaaaaattccatggtgcattattctttacaatgataaatgtgatgttcaatgggatggcagaactatccatgacagtttataggctacctgtgttct |
42175326 |
T |
|
| Q |
614 |
acaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcctttttggaatctttgatatggat |
713 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||| ||||||| ||||||||| |
|
|
| T |
42175325 |
acaaacaaagggatatcatgttttaccctgcatgggcatttgcattacccatatggattcttaggatccctctttcctttatggaatcagcgatatggat |
42175226 |
T |
|
| Q |
714 |
tgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttactttt |
777 |
Q |
| |
|
||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42175225 |
tgttcttacatattttacaattgggttcgctccttctgctagcaggtaatatgagtgtactttt |
42175162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 14 - 777
Target Start/End: Complemental strand, 42156753 - 42155990
Alignment:
| Q |
14 |
agacatttgacctctttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacagg |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || || ||||||||||| ||||||||||| |
|
|
| T |
42156753 |
agacatttgaactctttgacgacattattctactttcagaaggtcaaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacagg |
42156654 |
T |
|
| Q |
114 |
ctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttat |
213 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42156653 |
ttttaggtgtcctgagagaaaagggattgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaatagatgaaccttat |
42156554 |
T |
|
| Q |
214 |
agatatgtttcagttcctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggttccttataataagagtcaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
42156553 |
agatatgtttcagttcctgaatttgttgatttctttcattcatttcatattggagaagaaattgcggcagaacttaaggttccttataataagagacaaa |
42156454 |
T |
|
| Q |
314 |
ctcacccagcagcattagtcaaagaaaaatatggtatttcaaaatgggaactatttaaggcatgcttttcaaaagaatggcttcttatgaagaggaatgc |
413 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42156453 |
ctcacccagctgcgttagtgaaagaaaaatatggtatttcaaattgggaactatttaaggcatgcttttctaaagaatggcttcttatgaagaggaatgc |
42156354 |
T |
|
| Q |
414 |
ttttgtttatgtgttcaaaacaacacagatagcaatcatgtctgttattacttttactgtgttctttagaacaaagatgccggttggtactgttcaagat |
513 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42156353 |
ttttgtttatgtgttcaagacaacacagataacaatcatttctattattacttttactgtgttctttagaacaaagatgcctgttggtactgttcaagat |
42156254 |
T |
|
| Q |
514 |
ggacaaaaattctacggtgcattattcttcactctgataaatgtgatgtttaatgggttggcagaagtatacatgacagttgctaggcttcctgtgttcc |
613 |
Q |
| |
|
|||||||||||| | ||||||||||| || || ||||||||||||||||| |||||| |||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
42156253 |
ggacaaaaattccatggtgcattattttttacactgataaatgtgatgttcaatgggatggcagaactatccatgactgttgctaggcttcctgtgttct |
42156154 |
T |
|
| Q |
614 |
acaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcctttttggaatctttgatatggat |
713 |
Q |
| |
|
| ||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||| |
|
|
| T |
42156153 |
ataaacaaagggatttcatgttttatcctgcatgggcatttggattacccatatggattcttaggattcctctttcctttttggaatcagcgatatggat |
42156054 |
T |
|
| Q |
714 |
tgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttactttt |
777 |
Q |
| |
|
||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42156053 |
tgttcttacatattttacaattgggttcgctccttctgctagcaggtaatatgagtgtactttt |
42155990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 42135673 - 42135283
Alignment:
| Q |
14 |
agacatttgacctctttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacagg |
113 |
Q |
| |
|
|||||||||| |||||||| |||||||| || ||||||||||||||||| ||||| ||||| || || ||||||||| || |||| || ||| || || |
|
|
| T |
42135673 |
agacatttgaactctttgatgacattatcctactttcagaaggtcaaattgtataccaaggaccacgcgaaaatgtgttacagttttttgaaaccatcgg |
42135574 |
T |
|
| Q |
114 |
ctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttat |
213 |
Q |
| |
|
|| | ||||| |||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
42135573 |
tttcaaatgtcctccaagaaaaggagtagctgattttttacaagaagtaacatccaaaaaagaccaacaacaatattggtttagaagagataaaccttat |
42135474 |
T |
|
| Q |
214 |
agatatgtttcagttcctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggttccttataataagagtcaaa |
313 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| | ||| | | ||| ||| ||||| ||| ||||||| |||| |
|
|
| T |
42135473 |
aaatatgtttcagtttctgaatttgttgattcctttgattcatttcacattggagagcagcttgtgacggagcttatggttcggtatgataagagacaaa |
42135374 |
T |
|
| Q |
314 |
ctcacccagcagcattagtcaaagaaaaatatggtatttcaaaatgggaactatttaaggcatgcttttcaaaagaatggcttcttatgaa |
404 |
Q |
| |
|
|||||||||| |||||||| |||||||| | ||| || ||||| |||||| |||| |||||||| |||||| ||||||| | |||||||| |
|
|
| T |
42135373 |
ctcacccagctgcattagtgaaagaaaagtttggaatatcaaagtgggaaatattgaaggcatgtatttcaagagaatggttacttatgaa |
42135283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 34144516 - 34144416
Alignment:
| Q |
34 |
gacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacaggctttaggtgtccagagagaa |
133 |
Q |
| |
|
|||||||| || |||| ||||| |||||| |||| |||||||| | |||||||||||| ||||||| ||||||| ||| ||||| ||||| ||||||| |
|
|
| T |
34144516 |
gacattatcctacttt-agaagctcaaattgtattccaaggtccacatgaaaatgtgcttcagttctttgaatacataggttttagatgtcccgagagaa |
34144418 |
T |
|
| Q |
134 |
aa |
135 |
Q |
| |
|
|| |
|
|
| T |
34144417 |
aa |
34144416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 2151485 - 2151409
Alignment:
| Q |
86 |
atgtgctagagttcttcgaatacacaggctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagta |
162 |
Q |
| |
|
|||| |||||||| || |||| ||||| || | |||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
2151485 |
atgtactagagttttttgaatcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaagaagta |
2151409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 2163725 - 2163683
Alignment:
| Q |
120 |
gtgtccagagagaaaaggtgttgctgatttcttacaagaagta |
162 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
2163725 |
gtgtcctgaaagaaaaggagttgctgatttcttacaagaagta |
2163683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 19539700 - 19539770
Alignment:
| Q |
325 |
gcattagtcaaagaaaaatatggtatttcaaaatgggaactatttaaggcatgcttttcaaaagaatggct |
395 |
Q |
| |
|
|||||||| || ||||| | ||| || || ||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
19539700 |
gcattagtaaaggaaaagtttggaatctccaaatgggaactcttcaaggcatgcttttcaagagaatggct |
19539770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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