View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19493_high_10 (Length: 379)
Name: NF19493_high_10
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19493_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 32671138 - 32670776
Alignment:
| Q |
1 |
ttcacgaattcatctcgaccagtgtaatttagctgcacataaaccacaaaaaacggaagtaaaatggattaatgtttaactgaaatacacctttcgtaga |
100 |
Q |
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| T |
32671138 |
ttcacgaattcatctcgaccagtgtaatttagctgcacataaaccacaaaaaacggaagtaaaatggattaatgtttaactgaaatacacctttcgtaga |
32671039 |
T |
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| Q |
101 |
atcttgtgatttatttattttttcgctttatatagcatagcccattggaagaaaataagagaggtcgagagnnnnnnngttgagcggaataaaggggttc |
200 |
Q |
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| T |
32671038 |
atctagtgatttattt---ttttggctttatatagcatagctcattggaataaaataagagaggtcgagagaaaaaaagttgagcggaataaaggggttc |
32670942 |
T |
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| Q |
201 |
cttattctctatgaatatgatttaaggttctctaacaactttccatgcaataaaggcctccctatagttactcacatataaccacaacattttctcccat |
300 |
Q |
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| T |
32670941 |
cttattctctatgaatatgatttaagcttctctaacaactttccatgcaataaaggcctccctatagttactcacatataaccacaacattttctcccat |
32670842 |
T |
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| Q |
301 |
agttgcattaagaaatgattaaaggaatatttatttactcttgataactacgtgtatttcgtccct |
366 |
Q |
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| T |
32670841 |
agttgcattaagaaatgattaaaggaatatttatttactcttgataactacatgtatttcgtccct |
32670776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 45505479 - 45505569
Alignment:
| Q |
44 |
ccacaaaaaacggaagtaaaatggattaatgtttaactgaaatacacctttcgtagaatcttgtgatttatttattttttcgctttatatagcat |
138 |
Q |
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| T |
45505479 |
ccacaaaaaccggaagtaaaatggattaatgtttaactgaaatacacctttcgtggaatctcgtg----atttattttttcactttatatagcat |
45505569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45505418 - 45505464
Alignment:
| Q |
1 |
ttcacgaattcatctcgaccagtgtaatttagctgcacataaaccac |
47 |
Q |
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| T |
45505418 |
ttcactaattcatctcgaccggtgtaatttagctgcacataaaccac |
45505464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44533171 - 44533217
Alignment:
| Q |
1 |
ttcacgaattcatctcgaccagtgtaatttagctgcacataaaccac |
47 |
Q |
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| T |
44533171 |
ttcacgaattcatcccgaccagtgtaatttagccgcacataaaccac |
44533217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 2304825 - 2304739
Alignment:
| Q |
48 |
aaaaaacggaagtaaaatggattaatgtttaactgaaatacacctttcgtagaatcttgtgatttatttattttttcgctttatatagcat |
138 |
Q |
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||||| ||||| ||||||||| | |||||||||| |||||||| ||||| |||||| ||||| ||||| |||||||||||||||||| |
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| T |
2304825 |
aaaaaccggaaataaaatggaatcatgtttaactcaaatacactattcgtggaatctcgtgatgtattt----tttcgctttatatagcat |
2304739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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