View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19493_high_18 (Length: 250)

Name: NF19493_high_18
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19493_high_18
NF19493_high_18
[»] chr6 (2 HSPs)
chr6 (1-121)||(21146720-21146840)
chr6 (174-225)||(21146893-21146944)
[»] chr8 (4 HSPs)
chr8 (189-222)||(31909187-31909220)
chr8 (187-221)||(3479093-3479127)
chr8 (174-222)||(3785864-3785911)
chr8 (174-222)||(3788574-3788621)
[»] chr7 (1 HSPs)
chr7 (174-222)||(2577027-2577074)
[»] chr1 (1 HSPs)
chr1 (174-222)||(16385610-16385657)
[»] chr5 (1 HSPs)
chr5 (194-222)||(37498297-37498325)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 21146720 - 21146840
Alignment:
Q  1 gagccaagttaggaagttagccgattgtagtcacatgtcaatgttttcaatgtcatgctagaaagctcccagaaccttcacataatcagagacccttcgt 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21146720 gagccaagttaggaagttagccaattgtagtcacatgtcaatgttttcaatgtcatgctagaaagctcccagaaccttaacataatcagagacccttcgt 21146819  T
Q  101 gttaagaaacatgtcatccat 121  Q
    |||||||||||||||||||||    
T  21146820 gttaagaaacatgtcatccat 21146840  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 21146893 - 21146944
Alignment:
Q  174 gatacaagaatgaaaagagaggtacaaatgagtcaacttgtgacttatagtc 225  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21146893 gatacaagaatgaaaagagaggtacaaatgagtcaacatgtgacttatagtc 21146944  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 31909187 - 31909220
Alignment:
Q  189 agagaggtacaaatgagtcaacttgtgacttata 222  Q
    ||||||||||||||||||||||||||||||||||    
T  31909187 agagaggtacaaatgagtcaacttgtgacttata 31909220  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 3479127 - 3479093
Alignment:
Q  187 aaagagaggtacaaatgagtcaacttgtgacttat 221  Q
    |||||| ||||||||||||||||||||||||||||    
T  3479127 aaagagcggtacaaatgagtcaacttgtgacttat 3479093  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 3785864 - 3785911
Alignment:
Q  174 gatacaagaatgaaaagagaggtacaaatgagtcaacttgtgacttata 222  Q
    ||||||||||| |||| || | |||||||||||||||||||||||||||    
T  3785864 gatacaagaataaaaa-agtgatacaaatgagtcaacttgtgacttata 3785911  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 3788574 - 3788621
Alignment:
Q  174 gatacaagaatgaaaagagaggtacaaatgagtcaacttgtgacttata 222  Q
    |||||||||||||||| || | |||||||| ||||||||||||||||||    
T  3788574 gatacaagaatgaaaa-agtgatacaaatgggtcaacttgtgacttata 3788621  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 2577074 - 2577027
Alignment:
Q  174 gatacaagaatgaaaagagaggtacaaatgagtcaacttgtgacttata 222  Q
    |||||||||||||||| || | |||||||||||||||||||||||||||    
T  2577074 gatacaagaatgaaaa-agtgatacaaatgagtcaacttgtgacttata 2577027  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 16385657 - 16385610
Alignment:
Q  174 gatacaagaatgaaaagagaggtacaaatgagtcaacttgtgacttata 222  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  16385657 gatacaaaaatgaaa-gagatgtacaaatgagtcaacttgtgacttata 16385610  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 37498297 - 37498325
Alignment:
Q  194 ggtacaaatgagtcaacttgtgacttata 222  Q
    |||||||||||||||||||||||||||||    
T  37498297 ggtacaaatgagtcaacttgtgacttata 37498325  T

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