View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19493_high_4 (Length: 570)
Name: NF19493_high_4
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19493_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 2 - 555
Target Start/End: Original strand, 26621519 - 26622073
Alignment:
| Q |
2 |
aacacaatagaaaatataaagttatgctactctatgctaatgcccataacaagcctatggttgagccaagatgctaactagcacaagtagcttgtattac |
101 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621519 |
aacacaatagaaaagataaagttatgctactctatgctaatgctcataacaagcctatggttgagccaagatgctaactagcacaagtagcttgtattac |
26621618 |
T |
|
| Q |
102 |
aaggcatctctatgctgcttctaattccaaattgtttaacaatgaccaactttgtcatcgaaggagaggcctagtgacaagagttgagacactaatatat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621619 |
aaggcatctctatgctgcttctaattccaaattgtttaacaatgaccaactttgtcatcgaaggagaggcctagtgacaagagttgagacactaatatat |
26621718 |
T |
|
| Q |
202 |
tttatgaaggaagtataaggttcaatatcttctactaataaatcgccatctccctaacgaattaatctctaacaatttgcatataggactaaattcaaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621719 |
tttatgaaggaagtataaggttcaatatcttctactaataaatcgccatctccctaacgaattaatctctaacaatttgcatataggactaaattcaaat |
26621818 |
T |
|
| Q |
302 |
ttataaaaactataaatatcaacgattcagtagcaagtacagtatattcaattaaagacaaaagacaaagcaatgaatcatctatcgctagttaccacaa |
401 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26621819 |
ttataaaaactataaatatcaacaattcggtagcaagtacagtatattcaattaaagacaaaagacaaagcaatgaatcatctatcgccagttaccacaa |
26621918 |
T |
|
| Q |
402 |
taacattattaggatgttgagggtctgatcctgctgctaacaaattccatctcccctgaagtttccatggtattatctctattctatttcac-atcttaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
26621919 |
taacattattaggatgttgagggtctgatcctgctgctaacaaattccatctcccctgaagtttccatggtatcatctctattctatttcacaatcttaa |
26622018 |
T |
|
| Q |
501 |
accattggcgtatgttacatcaatgataatcagtgtaaaactaaacatagctagt |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26622019 |
accattggcgtatgttacatcaatgataatcactgtaaaactaaacatagctagt |
26622073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University