View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19493_low_10 (Length: 394)
Name: NF19493_low_10
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19493_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 42520381 - 42520003
Alignment:
| Q |
1 |
atagttacctcacaagaccacttcttgatggtgccccaagaaccaaaagttcaatggaatattctctaataccttctatgattgccttagatacatccat |
100 |
Q |
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| T |
42520381 |
atagttacctcacaagaccacttcttgatggtgccccaagaaccaaaagttcaatggaatattctctaataccttctatgattgccttagatacatccat |
42520282 |
T |
|
| Q |
101 |
gtcctccaataaaacttccttgcatagtatctatcatatttaaagnnnnnnnnn-tgagacatttaatcgttagttttctgannnnnnnnggggtgaatc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| |
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| T |
42520281 |
gtcctccaataaaacttccttgcatagtatctatcatatttaaagaagaaaaaaatgcgacatttaatcgttagttttctgattttttttcgggtgaatc |
42520182 |
T |
|
| Q |
200 |
taggatatttgtggccgagagccagataccaatccctagaaaagtcaagagcacattatgtgttagaacttacattctttctattgcagaagacacgaaa |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520181 |
taggatgtttgtggccgagagccagataccaatccctagaaaagtcaagagcacattatgtgttagaacttacattctttctattgcagaagacacgaaa |
42520082 |
T |
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| Q |
300 |
cgaactgaaaagctccttagattcgttgtccatttgtcgcatatatgctctgcctacatcatcattggcatcaacagat |
378 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520081 |
cgaactgaatagctccttagattcgttgtccatttgtcgcatatatgctctgcctacatcatcattggcatcaacagat |
42520003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 42528557 - 42528176
Alignment:
| Q |
1 |
atagttacctcacaagaccacttcttgatggtgccccaagaaccaaaagttcaatggaatattctctaataccttctatgattgccttagatacatccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528557 |
atagttacctcacaagaccacttcttgatggtgccccaagaaccaaaagttcaatggaatattctctaataccttctatgattgccttagatacatccat |
42528458 |
T |
|
| Q |
101 |
gtcctccaataaaacttccttgcatagtatctatcatatttaaagnnnnnnnnn-----tgagacatttaatcgttagttttctgannnnnnnnggggtg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
42528457 |
gtcctccaataaaacttccttgcatagtatctatcatatttaaagaagaagaaaaaaaatgagacatttaatcgttagttttctgattttgttcggg-tg |
42528359 |
T |
|
| Q |
196 |
aatctaggatatttgtggccgagagccagataccaatccctagaaaagtcaagagcacattatgtgttagaacttacattctttctattgcagaagacac |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528358 |
aatctaggatatttgtggccgagagccagataccaatccctagaaaagtcaagagcacattatgtgttagaacttacattctttctattgcagaagacac |
42528259 |
T |
|
| Q |
296 |
gaaacgaactgaaaagctccttagattcgttgtccatttgtcgcatatatgctctgcctacatcatcattggcatcaacagat |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
42528258 |
gaaacgaactgaaaagctccttagattcgttgtccatttgtcgcatatatgctctgcctacatcgttattggcatcaacagat |
42528176 |
T |
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