View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19493_low_12 (Length: 360)
Name: NF19493_low_12
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19493_low_12 |
 | |
|
| [»] scaffold0650 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0650 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 7732 - 7412
Alignment:
| Q |
18 |
aagaaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaaga |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7732 |
aagaaggtcataatcgacgaagctgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaatctccttcagaaaaaattggaaga |
7633 |
T |
|
| Q |
118 |
ggaaattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagtagcagcaaggtactcttagaactca |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7632 |
ggaaattgtgagttgtgacaattaatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagtagcagcaaggtagtcttagaactca |
7533 |
T |
|
| Q |
218 |
aacaacacgtacagcaaccgcaccaatatatttgcacaccaatttgaataggttgacacggcaaggtgtttgtttaattccaatcaatggaaattcaatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7532 |
aacaacacgtacagcaaccgcaccaatatatttgcacaccaatttgaatgggttgacacggctaggtgtttgtttaattccaatcaatggaaattcaatg |
7433 |
T |
|
| Q |
318 |
aaaaccatgcagtaatatgga |
338 |
Q |
| |
|
|||| ||||| | |||||||| |
|
|
| T |
7432 |
aaaatcatgcggcaatatgga |
7412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 18432635 - 18432315
Alignment:
| Q |
18 |
aagaaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaaga |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
18432635 |
aagaaggtcataatcgacgaagctgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaatctccttcagaaaaaattggaaga |
18432536 |
T |
|
| Q |
118 |
ggaaattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagtagcagcaaggtactcttagaactca |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18432535 |
ggaaattgtgagttgtgacaattaatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagtagcagcaaggtagtcttagaactca |
18432436 |
T |
|
| Q |
218 |
aacaacacgtacagcaaccgcaccaatatatttgcacaccaatttgaataggttgacacggcaaggtgtttgtttaattccaatcaatggaaattcaatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18432435 |
aacaacacgtacagcaaccgcaccaatatatttgcacaccaatttgaatgggttgacacggctaggtgtttgtttaattccaatcaatggaaattcaatg |
18432336 |
T |
|
| Q |
318 |
aaaaccatgcagtaatatgga |
338 |
Q |
| |
|
|||| ||||| | |||||||| |
|
|
| T |
18432335 |
aaaatcatgcggcaatatgga |
18432315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 18445001 - 18444826
Alignment:
| Q |
18 |
aagaaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
18445001 |
aagaaggtcataatcgacgaagttgtgagcgaaaaatcaatgtaacaaataaatattaaatacttgtaggaggaaatctccttcaccaaaaattggaaga |
18444902 |
T |
|
| Q |
118 |
ggaaattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
193 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
18444901 |
ggaaattgtgagttgtgacaattaatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagta |
18444826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 18436827 - 18436653
Alignment:
| Q |
18 |
aagaaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaaga |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
18436827 |
aagaaggtcataatcgacgaagctgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaa-ctccttcaccgaaaattggaaga |
18436729 |
T |
|
| Q |
118 |
ggaaattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
193 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
18436728 |
ggaaattgtgagttgtgacaattaatatatttatagtgatccacaatgacagtgcgtttttcatttttcacaagta |
18436653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 18441100 - 18440928
Alignment:
| Q |
21 |
aaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaagagga |
120 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||| |
|
|
| T |
18441100 |
aaggtgataatcgacgaaggtgtaagcgaaaaatcaatgtaacaaataaatattaaatacttatacgaggaaatcttcttcaccgaaaattggaagagga |
18441001 |
T |
|
| Q |
121 |
aattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
193 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || |||||||||| ||||| ||||||||||||||| |
|
|
| T |
18441000 |
aattgtgagttgtgacaattaatatatttatagtgatccataatgacagtgcgtttttcatttttcacaagta |
18440928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University