View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19493_low_13 (Length: 359)

Name: NF19493_low_13
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19493_low_13
NF19493_low_13
[»] chr4 (12 HSPs)
chr4 (17-340)||(3762512-3762835)
chr4 (17-252)||(3776593-3776828)
chr4 (17-254)||(3780906-3781143)
chr4 (22-253)||(3745721-3745952)
chr4 (17-304)||(3751533-3751814)
chr4 (17-340)||(3755400-3755717)
chr4 (17-251)||(3766928-3767162)
chr4 (163-255)||(3771304-3771396)
chr4 (76-138)||(3789113-3789175)
chr4 (70-138)||(3845060-3845128)
chr4 (63-125)||(3770737-3770799)
chr4 (74-119)||(3851509-3851554)
[»] chr7 (1 HSPs)
chr7 (33-255)||(25985369-25985591)
[»] scaffold0433 (1 HSPs)
scaffold0433 (70-138)||(10020-10088)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 3762512 - 3762835
Alignment:
Q  17 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc 3762611  T
Q  117 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 216  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  3762612 aaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaa 3762711  T
Q  217 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3762712 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 3762811  T
Q  317 ttccacttagtatgtcgtgccagt 340  Q
    |||||||||||||||| |||||||    
T  3762812 ttccacttagtatgtcatgccagt 3762835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 3776593 - 3776828
Alignment:
Q  17 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 116  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3776593 cactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagc 3776692  T
Q  117 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 216  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||    
T  3776693 aaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaa 3776792  T
Q  217 gtcaaagggttgtcaatcatgcggactaaaccaaaa 252  Q
    || |||||||||||||||||||  ||||||||||||    
T  3776793 gttaaagggttgtcaatcatgctaactaaaccaaaa 3776828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 3780906 - 3781143
Alignment:
Q  17 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 116  Q
    |||| |||||||||||||||||||||||||||  |||||  || ||||||||||| | |||||||| |||||| |||||||||||||||||||| |||||    
T  3780906 cactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagc 3781005  T
Q  117 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 216  Q
    |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  3781006 aaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaa 3781105  T
Q  217 gtcaaagggttgtcaatcatgcggactaaaccaaaagc 254  Q
    || ||||||||||||||||||   || |||||||||||    
T  3781106 gttaaagggttgtcaatcatgttaaccaaaccaaaagc 3781143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 3745721 - 3745952
Alignment:
Q  22 ccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaat 121  Q
    |||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||     
T  3745721 ccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaag 3745820  T
Q  122 tcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaa 221  Q
    |||| | ||  |  ||||  |  || |||| ||||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||||||| ||    
T  3745821 tcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaa 3745920  T
Q  222 agggttgtcaatcatgcggactaaaccaaaag 253  Q
    |||||||||||| |||  ||||||||||||||    
T  3745921 agggttgtcaataatgttgactaaaccaaaag 3745952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 3751533 - 3751814
Alignment:
Q  17 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 116  Q
    |||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3751533 cactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagc 3751632  T
Q  117 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 216  Q
    ||| ||||| | ||  |||||||| |  || || |||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| |    
T  3751633 aaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctata 3751732  T
Q  217 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattg 304  Q
    ||||||||||  |||| ||||  |||| ||||||||    ||||   ||||| || ||| |||||||||||| |||||||||||||||    
T  3751733 gtcaaagggtcatcaaacatgttgactgaaccaaaa----taag--tggttgtgtttagcttcaatggtggtggaacaattgtaattg 3751814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 3755400 - 3755717
Alignment:
Q  17 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 116  Q
    |||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||||||||||||||||||||||| | |||||    
T  3755400 cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc 3755499  T
Q  117 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 216  Q
    ||||||||| | || ||| ||| | | ||| || |   ||||||||||||||||||||||||||||||||||||  |||||| |||  | ||||||||||    
T  3755500 aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa 3755599  T
Q  217 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 316  Q
    || ||||||||||| |||||||||||| ||||||| ||| |      |||||||| |||||||| ||||||| | |||| || || ||  |||||||| |    
T  3755600 gttaaagggttgtcgatcatgcggactgaaccaaaggcagt------ggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggtttt 3755693  T
Q  317 ttccacttagtatgtcgtgccagt 340  Q
    ||||||| | ||||||||||||||    
T  3755694 ttccactcactatgtcgtgccagt 3755717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 3766928 - 3767162
Alignment:
Q  17 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 116  Q
    |||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||||||||||||||||||||||| | |||||    
T  3766928 cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc 3767027  T
Q  117 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 216  Q
    ||||||||| | || ||| ||| | | ||| || |   ||||||||||||||||||||||||||||||||||||  |||||| |||  | ||||||||||    
T  3767028 aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa 3767127  T
Q  217 gtcaaagggttgtcaatcatgcggactaaaccaaa 251  Q
    || ||||||||||| |||||||||||| |||||||    
T  3767128 gttaaagggttgtcgatcatgcggactgaaccaaa 3767162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 3771304 - 3771396
Alignment:
Q  163 gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagca 255  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagca 3771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
Q  76 atagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 138  Q
    |||||||| || |||||||||||||||||||||| ||||||||| |||||  ||| |||||||    
T  3789113 atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa 3789175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 3845060 - 3845128
Alignment:
Q  70 cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 138  Q
    |||||||||||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  3845060 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 3845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 3770737 - 3770799
Alignment:
Q  63 attcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcat 125  Q
    |||||| ||||| |||||||   ||||||||||||||||||||||| | ||| ||||||||||    
T  3770737 attccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcat 3770799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
Q  74 agatagtaatagtacttccattatactttccttcaatcaaagcaaa 119  Q
    |||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  3851509 agatagtaatggtactcccattatactttccttcaaacaaggcaaa 3851554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 255
Target Start/End: Complemental strand, 25985591 - 25985369
Alignment:
Q  33 aggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcaca 132  Q
    |||||| ||||||||||||| |  | | |||||||||||||| ||||| || || || ||||| ||||| |||||||| | |||||||||||| | ||      
T  25985591 aggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagccatg 25985492  T
Q  133 agaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaa 232  Q
    | ||   |||  ||    |||||||  || |||||||||||||| ||||||||||| | ||| ||||||| ||  |||||||| || |||||||| ||||    
T  25985491 ataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaa 25985392  T
Q  233 tcatgcggactaaaccaaaagca 255  Q
    |||||   |||||||||||||||    
T  25985391 tcatgttaactaaaccaaaagca 25985369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 10088 - 10020
Alignment:
Q  70 cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 138  Q
    |||||||||||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  10088 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 10020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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