View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19493_low_14 (Length: 354)
Name: NF19493_low_14
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19493_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 13409052 - 13408723
Alignment:
| Q |
9 |
gcagagagggtaaaagtctaacaaccttgctataatcacaaatttcttggatacattttgttgcaatttaatgagcttattcatttattttcttgatttg |
108 |
Q |
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| T |
13409052 |
gcagagagggtaaaagtctaacaaccttgctataatcacaaatttcttggatacattttgttgcaatttaatgagcttattcatttatttccttgatttg |
13408953 |
T |
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| Q |
109 |
tacattgcaggaaagaagaataagaattagtgcaagaatnnnnnnnctgcaagaccttttcccgaatgcagataaggtaaatatattgaagatttggatt |
208 |
Q |
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| T |
13408952 |
tacattgcaggaaagaagaataagaattagtgcaagaataaaaaaactgcaagaccttttcccgaatgcagataaggtaaatatattgaagatttggatt |
13408853 |
T |
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| Q |
209 |
gacagcgagtttagcagaatcacaatgacaccttactatcttgttgtatttcaaaatgtaacttttactaaaaccacggtggcacaccgtaatattatca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13408852 |
gacagcgagtttagcagaatcacaatgacaccttactatcttgttgtatttcaaaatgtaacttttactaaaaccacggtggcacaccgtaatattatca |
13408753 |
T |
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| Q |
309 |
cacttaccgtcgatccaaactagcacataa |
338 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
13408752 |
cacttaccgtcgatccaaactagcacataa |
13408723 |
T |
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