View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19493_low_18 (Length: 273)
Name: NF19493_low_18
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19493_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 7902199 - 7902347
Alignment:
| Q |
112 |
tatttatttccaaatataagga-ttatgagacaaactacctttgctagtggagcaagacaattggttgtgcagctagcattagaaacaatatgaatatcc |
210 |
Q |
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| T |
7902199 |
tatttatttccaaatttaaggaattatgagacaaactacctttgctagtggagcaagacaattggttgtgcagctagcattagaaacaatatgaatatcc |
7902298 |
T |
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| Q |
211 |
gacttatattctttctcattgacaccaactacatacattggtgcatcct |
259 |
Q |
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| T |
7902299 |
gacttatattctttctcattgacaccaactacatacattggtgcatcct |
7902347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 18659433 - 18659321
Alignment:
| Q |
147 |
tacctttgctagtggagcaagacaattggttgtgcagctagcattagaaacaatatgaatatccgacttatattctttctcattgacaccaactacatac |
246 |
Q |
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| T |
18659433 |
tacctttgcaagtggtgcaaggcagttggtagtgcagctagcattggagacgatatcaaactctggcttgtattccttctcgttaacaccaacaacaaac |
18659334 |
T |
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| Q |
247 |
attggtgcatcct |
259 |
Q |
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| T |
18659333 |
atgggagcatcct |
18659321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 42991456 - 42991568
Alignment:
| Q |
147 |
tacctttgctagtggagcaagacaattggttgtgcagctagcattagaaacaatatgaatatccgacttatattctttctcattgacaccaactacatac |
246 |
Q |
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| T |
42991456 |
tacctttgcaagtggtgcaaggcagttggtagtgcaactagcattggagatgatatcaaactctggcttgtattccttctcattgacaccaacaacaaac |
42991555 |
T |
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| Q |
247 |
attggtgcatcct |
259 |
Q |
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| T |
42991556 |
atgggagcatcct |
42991568 |
T |
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