View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19493_low_3 (Length: 614)

Name: NF19493_low_3
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19493_low_3
NF19493_low_3
[»] chr5 (1 HSPs)
chr5 (229-593)||(38487098-38487462)
[»] chr8 (1 HSPs)
chr8 (229-560)||(45107579-45107910)
[»] chr3 (1 HSPs)
chr3 (282-593)||(42877852-42878163)
[»] chr1 (2 HSPs)
chr1 (237-489)||(4930206-4930476)
chr1 (475-560)||(4930111-4930196)
[»] chr6 (1 HSPs)
chr6 (277-402)||(1859530-1859655)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 229 - 593
Target Start/End: Original strand, 38487098 - 38487462
Alignment:
Q  229 ctaaacctttctccttcctcactcgttctctactgtgtcgtaaaactttctccatgattcttctttgaactttccctcaacaagctatatcaattcaaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38487098 ctaaacctttctccttcctcactcgttctctactgtgtcgtaatactttctccatgattcttctttgaactttcccacaacaagctatatcaattcaaat 38487197  T
Q  329 atcttgttccagcaaatatataatatattttaaaattcttgttatagtttttgttatctctgttcaatctatatgtctcaattaaaaccctttttcaacc 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  38487198 atcttgttccagcaaatatataatatattttaaaattcttgttatagtttttgttatctctgttcaatctatatctctcaattaaaaccctttttcaact 38487297  T
Q  429 taggaactagattcttgttttctcaattaaaacccttttttcaatctatatctcaattcttaaatttcattccacgagaaaacaattgatggagatgagc 528  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38487298 taggaactagattcttgttttctcaattaaaacccctttttcaatctacatctcaattcttaaatttcgttccacgagaaaacaattgatggagatgagc 38487397  T
Q  529 tgtatgaaaagagggtgaatctttcaaattggnnnnnnnntattgatgcgtggggtatttgccct 593  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||| ||||||||||    
T  38487398 tgtatgaaaagagggtgaatctttcaaattggaaaaaaaatattgatgcgtgggatatttgccct 38487462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 229 - 560
Target Start/End: Complemental strand, 45107910 - 45107579
Alignment:
Q  229 ctaaacctttctccttcctcactcgttctctactgtgtcgtaaaactttctccatgattcttctttgaactttccctcaacaagctatatcaattcaaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45107910 ctaaacctttctccttcctcactcgttctctactgtgtcgtaatactttctccatgattcttctttgaactttccctcaacaagctatatcaattcaaat 45107811  T
Q  329 atcttgttccagcaaatatataatatattttaaaattcttgttatagtttttgttatctctgttcaatctatatgtctcaattaaaaccctttttcaacc 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||     
T  45107810 atcttgttccagcaaatatataatatattttaaaattcttgttatagtttttgttatctctgttcaatctatatccctcaattaaaaccctttttcaact 45107711  T
Q  429 taggaactagattcttgttttctcaattaaaacccttttttcaatctatatctcaattcttaaatttcattccacgagaaaacaattgatggagatgagc 528  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  45107710 taggaactagattcttgttttctcaattaaaacccctttttcaatctacatctcaattcttaaatttcgttccacgcgaaaacaattgatggagatgagc 45107611  T
Q  529 tgtatgaaaagagggtgaatctttcaaattgg 560  Q
    ||||||||||||||||||||||||||||||||    
T  45107610 tgtatgaaaagagggtgaatctttcaaattgg 45107579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 282 - 593
Target Start/End: Original strand, 42877852 - 42878163
Alignment:
Q  282 atgattcttctttgaactttccctcaacaagctatatcaattcaaatatcttgttccagcaaatatataatatattttaaaattcttgttatagtttttg 381  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42877852 atgattcttctttgaactttcccacaacaagctatatcaattcaaatatcttgttccagcaaatatataatatattttaaaattcttgttatagtttttg 42877951  T
Q  382 ttatctctgttcaatctatatgtctcaattaaaaccctttttcaacctaggaactagattcttgttttctcaattaaaacccttttttcaatctatatct 481  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  42877952 ttatctctgttcaatctatatctctcaattaaaaccctttttcaacttaggaactagattcttgttttctaaattaaaacccctttttcaatctacatct 42878051  T
Q  482 caattcttaaatttcattccacgagaaaacaattgatggagatgagctgtatgaaaagagggtgaatctttcaaattggnnnnnnnntattgatgcgtgg 581  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        |||||||| ||||    
T  42878052 caattcttaaatttcgttccacgagaaaacaattgatggagattagctgtatgaaaagagggtgaatctttcaaattggaaaaaaaatattgatgtgtgg 42878151  T
Q  582 ggtatttgccct 593  Q
    ||||||||||||    
T  42878152 ggtatttgccct 42878163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 237 - 489
Target Start/End: Complemental strand, 4930476 - 4930206
Alignment:
Q  237 ttctccttcctcactcgttctctactgtgtcgtaaaactttctccatgattcttctt----------------tgaactttccctcaacaagctatatca 320  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||                || ||||||||||||||||||||||||    
T  4930476 ttctccttcctcactcgttctctgctgtgtcgtaatactttctccatgattcttcttctctatgattcttctctgtactttccctcaacaagctatatca 4930377  T
Q  321 attcaaatatcttgttccagcaaatatata--atatattttaaaattcttgttatagtttttgttatctctgttcaatctatatgtctcaattaaaaccc 418  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4930376 attcaaatatcttgttccagcaaatatatataatatattttaaaattcttgttatagtttttgttatctctgttcaatctatatctctcaattaaaaccc 4930277  T
Q  419 tttttcaacctaggaactagattcttgttttctcaattaaaacccttttttcaatctatatctcaattctt 489  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4930276 tttttcaatttaggaactagattcttgttttctcaattaaaacccctttttcaatctatatctcaattctt 4930206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 475 - 560
Target Start/End: Complemental strand, 4930196 - 4930111
Alignment:
Q  475 tatatctcaattcttaaatttcattccacgagaaaacaattgatggagatgagctgtatgaaaagagggtgaatctttcaaattgg 560  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  4930196 tatatctcaattcttaaatttcattccacgagaaaacaattgagggagatgagctgtatgacaagagggtgaatctttcaaattgg 4930111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 1859655 - 1859530
Alignment:
Q  277 tctccatgattcttctttgaactttccctcaacaagctatatcaattcaaatatc-ttgttccagcaaatatataatatattttaaaattcttgttatag 375  Q
    |||||||||||||| | |  |||||| ||||||||| ||||||||| ||||| || ||||||||||||| ||||||||| |||| ||||||||| ||| |    
T  1859655 tctccatgattcttttctatactttctctcaacaagttatatcaatccaaatctccttgttccagcaaaaatataatatctttt-aaattcttggtatgg 1859557  T
Q  376 tttttgttatctctgttcaatctatat 402  Q
    |||| | ||||| ||||||||||||||    
T  1859556 ttttggctatctttgttcaatctatat 1859530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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