View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19493_low_8 (Length: 431)

Name: NF19493_low_8
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19493_low_8
NF19493_low_8
[»] chr1 (16 HSPs)
chr1 (142-415)||(52269504-52269776)
chr1 (1-141)||(52269394-52269534)
chr1 (174-291)||(39428044-39428162)
chr1 (182-290)||(26853371-26853481)
chr1 (175-292)||(25132856-25132974)
chr1 (323-381)||(25731141-25731199)
chr1 (323-369)||(25778556-25778602)
chr1 (316-381)||(21549483-21549552)
chr1 (323-370)||(14580978-14581025)
chr1 (318-369)||(23506465-23506516)
chr1 (6-98)||(24980819-24980911)
chr1 (6-98)||(24989577-24989669)
chr1 (6-98)||(39527018-39527110)
chr1 (240-291)||(26654411-26654462)
chr1 (173-235)||(14581106-14581168)
chr1 (193-278)||(33085319-33085404)
[»] chr3 (12 HSPs)
chr3 (178-374)||(8714039-8714235)
chr3 (178-374)||(9065926-9066122)
chr3 (172-381)||(5631719-5631929)
chr3 (323-381)||(26298567-26298625)
chr3 (175-283)||(12145534-12145643)
chr3 (185-369)||(28730701-28730889)
chr3 (175-250)||(22487952-22488027)
chr3 (176-291)||(19542173-19542288)
chr3 (323-367)||(21828408-21828452)
chr3 (327-366)||(4597944-4597983)
chr3 (6-98)||(23512736-23512828)
chr3 (6-87)||(43767311-43767392)
[»] scaffold0011 (1 HSPs)
scaffold0011 (182-373)||(227274-227465)
[»] chr2 (10 HSPs)
chr2 (172-381)||(20518350-20518562)
chr2 (323-381)||(25460759-25460817)
chr2 (172-258)||(27917114-27917201)
chr2 (327-381)||(14921311-14921365)
chr2 (323-369)||(18819491-18819537)
chr2 (329-381)||(24188846-24188897)
chr2 (6-97)||(16011796-16011887)
chr2 (5-98)||(4825955-4826048)
chr2 (41-98)||(12880141-12880198)
chr2 (333-381)||(27917272-27917320)
[»] chr8 (6 HSPs)
chr8 (172-355)||(18789728-18789915)
chr8 (177-292)||(30544641-30544757)
chr8 (328-381)||(13582836-13582889)
chr8 (12-53)||(5221037-5221078)
chr8 (316-381)||(18771771-18771835)
chr8 (7-98)||(11766482-11766574)
[»] chr7 (16 HSPs)
chr7 (172-355)||(10924741-10924928)
chr7 (174-291)||(9455214-9455332)
chr7 (11-91)||(28084828-28084908)
chr7 (172-369)||(13708873-13709074)
chr7 (183-258)||(21536633-21536708)
chr7 (323-379)||(9760940-9760996)
chr7 (190-291)||(11082466-11082568)
chr7 (8-98)||(29559163-29559252)
chr7 (323-379)||(9801381-9801437)
chr7 (329-376)||(21536775-21536822)
chr7 (317-369)||(22334518-22334570)
chr7 (193-250)||(8607181-8607239)
chr7 (12-98)||(38663664-38663750)
chr7 (28-98)||(47188462-47188532)
chr7 (323-379)||(9552904-9552960)
chr7 (41-97)||(44107031-44107087)
[»] chr4 (14 HSPs)
chr4 (172-347)||(13066522-13066698)
chr4 (172-381)||(29438259-29438473)
chr4 (174-374)||(17183693-17183896)
chr4 (25-98)||(48051714-48051787)
chr4 (175-250)||(42498543-42498617)
chr4 (183-258)||(19602730-19602805)
chr4 (7-98)||(34701206-34701297)
chr4 (332-374)||(19602618-19602660)
chr4 (323-369)||(21077999-21078045)
chr4 (318-381)||(20984828-20984891)
chr4 (12-98)||(31917636-31917722)
chr4 (172-225)||(20984677-20984730)
chr4 (28-89)||(54623017-54623078)
chr4 (12-93)||(56128591-56128672)
[»] chr6 (3 HSPs)
chr6 (175-250)||(28178954-28179029)
chr6 (11-97)||(29129304-29129390)
chr6 (6-98)||(29301713-29301805)
[»] scaffold0065 (2 HSPs)
scaffold0065 (178-272)||(13232-13326)
scaffold0065 (323-381)||(13128-13186)
[»] chr5 (5 HSPs)
chr5 (176-381)||(18281280-18281489)
chr5 (240-381)||(22643075-22643219)
chr5 (323-369)||(15693112-15693158)
chr5 (10-96)||(9857800-9857885)
chr5 (6-98)||(41174301-41174393)
[»] scaffold0042 (1 HSPs)
scaffold0042 (174-258)||(89249-89333)
[»] scaffold0186 (1 HSPs)
scaffold0186 (186-374)||(32824-33013)
[»] scaffold0804 (2 HSPs)
scaffold0804 (323-370)||(695-742)
scaffold0804 (173-235)||(823-885)
[»] scaffold0107 (1 HSPs)
scaffold0107 (185-258)||(32613-32686)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 142 - 415
Target Start/End: Original strand, 52269504 - 52269776
Alignment:
Q  142 ttagcataacccttcagtaaatgccagaagtccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaatt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52269504 ttagcataacccttcagtaaatgccagaagtcccc-cttcgtctttgttggaaattaaattaagaaatcattcgtttataacttgtcttatgttagattt 52269602  T
Q  242 aagaaagtataacataatcatgtgatgaatcggtggaagtttattttaatctctgctattcgaccgttcaaatagtggggctcccttaagatgagttata 341  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||| ||||    
T  52269603 aagaaagtataacataatcctgtgatgaatcagtggaagtttattttaatctctgcaattcgatcgttcaaatagtagggttcccttaagatgagctata 52269702  T
Q  342 gccctatattcatacttagattcaattatattaaaaactagggaaaattatattgacctcccttaagatttgtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52269703 gccctatattcatacttagattcaattatattaaaaactagggaaaattatattgacctcccttaaggtttgtt 52269776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 52269394 - 52269534
Alignment:
Q  1 tttattcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaacgt 100  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52269394 tttattcttgaaaattgtgtatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaacat 52269493  T
Q  101 aagacacttgttagcataatccttcagtaaatgccagaagt 141  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  52269494 aagacacttgttagcataacccttcagtaaatgccagaagt 52269534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 291
Target Start/End: Original strand, 39428044 - 39428162
Alignment:
Q  174 cccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaa-ttaagaaagtataacataatcatgtgatgaatc 272  Q
    ||||||| ||||||||||||||||||||| |  ||||||| |||||||||||| |||||||| ||| |||||||| || |||||||     |||||||||    
T  39428044 cccccttggtctttgttgaaaattaaattgaataatcattagtttataacttgacttatgtttgaatttaagaaaatagaacataactccatgatgaatc 39428143  T
Q  273 ggtggaagtttattttaat 291  Q
     ||| ||||||||||||||    
T  39428144 agtgaaagtttattttaat 39428162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 26853371 - 26853481
Alignment:
Q  182 gtctttgttgaaaattaaattaagaaatcattcgtttataacttgtctt-atgttagaatt-aagaaagtataacataatcatgtgatgaatcggtggaa 279  Q
    ||||||||||||||||||||  || ||| | | |||||||| ||||||| ||||| ||||| ||||||||||||||||| | ||||||||||  ||||||    
T  26853371 gtctttgttgaaaattaaatcgagtaattactagtttataatttgtctttatgtttgaatttaagaaagtataacataaccctgtgatgaattagtggaa 26853470  T
Q  280 gtttattttaa 290  Q
    |||| ||||||    
T  26853471 gtttgttttaa 26853481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 292
Target Start/End: Original strand, 25132856 - 25132974
Alignment:
Q  175 ccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatg-ttagaattaagaaagtataacataatcatgtgatgaatcg 273  Q
    ||||||| ||||||||| || ||||||  ||||||| || ||||||||||||||||||| || || ||||||||||| ||||||| |   |||||||||     
T  25132856 ccccttcatctttgttggaatttaaatatagaaatctttagtttataacttgtcttatgtttggatttaagaaagtagaacataaccgcctgatgaatca 25132955  T
Q  274 gtggaagtttattttaatc 292  Q
     || || ||||||||||||    
T  25132956 atgaaattttattttaatc 25132974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 25731199 - 25731141
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||  ||||||||||    
T  25731199 tcccttaagatgagttatagctctaaattcataattagattcaattaatttaaaaacta 25731141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 25778602 - 25778556
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaatta 369  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  25778602 tcccttaagatgagttatagccctaaattcataattagattcaatta 25778556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 21549552 - 21549483
Alignment:
Q  316 gtggggctcccttaagatgagttatagccctat----attcatacttagattcaattatattaaaaacta 381  Q
    |||||| |||||||||||||||| ||||||||     |||||||||||||||||||||||||| ||||||    
T  21549552 gtggggttcccttaagatgagttgtagccctagctaaattcatacttagattcaattatattagaaacta 21549483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 14581025 - 14580978
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattat 370  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||    
T  14581025 tccctgaagatgagttatagccataaattcatacttagattcaattat 14580978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 23506516 - 23506465
Alignment:
Q  318 ggggctcccttaagatgagttatagccctatattcatacttagattcaatta 369  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  23506516 ggggttcccttaagatgagttataaccctaaattcatacttagattcgatta 23506465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 24980911 - 24980819
Alignment:
Q  6 tcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||| ||| ||||| ||| || ||||| ||||||||||||| |||||  ||||  ||||| ||||||| | |||||||||||| |||||||||    
T  24980911 tcttagaatttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaac 24980819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 24989669 - 24989577
Alignment:
Q  6 tcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||| ||| ||||| ||| || ||||| ||||||||||||| |||||  ||||  ||||| ||||||| | |||||||||||| |||||||||    
T  24989669 tcttagaatttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaac 24989577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 39527018 - 39527110
Alignment:
Q  6 tcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||||||||||| ||| ||  |||| ||||||||||||| |||||| ||||  ||||| ||||| | |||||  | |||||||||||||||    
T  39527018 tcttggaaattgtgcattcaacccattgaaacaacaaaaaggaactttttctacataaaatttatcgattatttccaattttgaatccttaac 39527110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 26654411 - 26654462
Alignment:
Q  240 ttaagaaagtataacataatcatgtgatgaatcggtggaagtttattttaat 291  Q
    ||||||||||| ||||| | | ||||||||||| ||||||||||||||||||    
T  26654411 ttaagaaagtagaacatgaccctgtgatgaatcagtggaagtttattttaat 26654462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 14581168 - 14581106
Alignment:
Q  173 ccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgtt 235  Q
    |||| |||||||||||||| |||||||||  | |||| ||| |||||||| ||||||||||||    
T  14581168 ccccacttcgtctttgttggaaattaaatacataaattattagtttataatttgtcttatgtt 14581106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 33085319 - 33085404
Alignment:
Q  193 aaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataatcatgtgatgaatcggtgga 278  Q
    |||||||||||  ||||||||| ||||||||||  |||||||| || ||||  ||||| ||||||| |  |||||||||| |||||    
T  33085319 aaattaaattatcaaatcattcatttataactttccttatgttggatttaatgaagtacaacataaccccgtgatgaatctgtgga 33085404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 178 - 374
Target Start/End: Original strand, 8714039 - 8714235
Alignment:
Q  178 cttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataatcatgtgatgaatcggtgg 277  Q
    |||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||| || ||||||||||| ||||||| | ||| ||||||| || |    
T  8714039 cttcatctttgttggaaattaaattttgaaatcattcgtttataacttgtcttatgttggatttaagaaagtagaacataaccttgtcatgaatcagttg 8714138  T
Q  278 aagtttattttaatctctgctattcgaccgttcaaatagtggggctcccttaagatgagttatagccctatattcatacttagattcaattatatta 374  Q
    |||||||||||||||  ||| |||| ||  ||||||| |||  | ||| ||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  8714139 aagtttattttaatccttgcaattcaactattcaaattgtgaagttccattaagattagttatagccctaaattcatacttagattctattatatta 8714235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 178 - 374
Target Start/End: Original strand, 9065926 - 9066122
Alignment:
Q  178 cttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataatcatgtgatgaatcggtgg 277  Q
    |||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||| || ||||||||||| ||||||| | ||| ||||||| || |    
T  9065926 cttcatctttgttggaaattaaattttgaaatcattcgtttataacttgtcttatgttggatttaagaaagtagaacataaccttgtcatgaatcagttg 9066025  T
Q  278 aagtttattttaatctctgctattcgaccgttcaaatagtggggctcccttaagatgagttatagccctatattcatacttagattcaattatatta 374  Q
    |||||||||||||||  ||| |||| ||  ||||||| |||  | ||| ||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  9066026 aagtttattttaatccttgcaattcaactattcaaattgtgaagttccattaagattagttatagccctaaattcatacttagattctattatatta 9066122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 381
Target Start/End: Original strand, 5631719 - 5631929
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataatcatgtgatgaat 271  Q
    |||||||||||||||||||  |||||||| |||||||| ||||  ||||||||| ||||||||| || |||| |||||| ||||| | |   ||||||||    
T  5631719 tccccccttcgtctttgttagaaattaaagtaagaaataattcacttataacttttcttatgttggatttaaaaaagtagaacattacctcatgatgaat 5631818  T
Q  272 cggtgga-agtttattttaatctctgctattcgaccgttcaaatagtggggctcccttaagatgagttatagccctatattcatacttagattcaattat 370  Q
    | | ||| | ||| |||||||| | || ||||  || |||||||  || || ||||| ||||||| ||||||||||| |||  ||||| |||||||||||    
T  5631819 cagcggacattttcttttaatccccgcaattcctcctttcaaattatgagggtccctaaagatgatttatagccctaaatttctacttcgattcaattat 5631918  T
Q  371 attaaaaacta 381  Q
    |||| ||||||    
T  5631919 attagaaacta 5631929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 26298625 - 26298567
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  26298625 tcccttaagatgagttatatccctaaattcatacttagattcaattatattagaaacta 26298567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 12145534 - 12145643
Alignment:
Q  175 ccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaat-taagaaagtataacataatcatgtgatgaatcg 273  Q
    ||||| ||||| |||||||||||||||  ||||||||||  ||||||| |||||||||||| | || |||||||||| ||||||||  |||||||||||     
T  12145534 cccctccgtctctgttgaaaattaaatatagaaatcattattttataaattgtcttatgtttggatataagaaagtagaacataatgttgtgatgaatca 12145633  T
Q  274 gtggaagttt 283  Q
    ||| ||||||    
T  12145634 gtgaaagttt 12145643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 369
Target Start/End: Original strand, 28730701 - 28730889
Alignment:
Q  185 tttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaatt-aagaaagtataacataatcatgtgatgaatcggtggaagttt 283  Q
    ||||||| |||||||||  || ||| |||||||||||| ||| |||||||| | ||| ||||||||| |||||||   | ||||||||  ||| ||||||    
T  28730701 tttgttggaaattaaatcgagtaatgattcgtttataatttgccttatgtttggatttaagaaagtagaacataactctctgatgaattcgtgaaagttt 28730800  T
Q  284 attttaat--ctctgctattcgaccgttca-aatagtggggctcccttaagatgagttatagccctatattcatacttagattcaatta 369  Q
    ||||||||  | | || |||| | | || | ||| |||||| |||||||||||||||| || || || |||||||||||||||||||||    
T  28730801 attttaataaccccgcaattcaatcatttacaattgtggggttcccttaagatgagttgtaaccttaaattcatacttagattcaatta 28730889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 22487952 - 22488027
Alignment:
Q  175 ccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagta 250  Q
    ||||||||||||||||| ||||||| ||||||||| | | |||||||||||| ||||| || || |||||||||||    
T  22487952 ccccttcgtctttgttggaaattaacttaagaaataaattgtttataacttgccttatattggatttaagaaagta 22488027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 19542173 - 19542288
Alignment:
Q  176 cccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaa-ttaagaaagtataacataatcatgtgatgaatcgg 274  Q
    |||| ||||||||||| |||||||||||||||||||||    ||||| ||||||||| || ||| |||| |||||| ||||||| | |||||| ||||      
T  19542173 ccctccgtctttgttggaaattaaattaagaaatcatt-acatataatttgtcttatatttgaatttaaaaaagtagaacataaccttgtgataaatccc 19542271  T
Q  275 tggaagtttattttaat 291  Q
    |||| ||||||||||||    
T  19542272 tggacgtttattttaat 19542288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 21828408 - 21828452
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaat 367  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  21828408 tcccttaagatgagtcatagccctaaattcatacttagattcaat 21828452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 4597944 - 4597983
Alignment:
Q  327 ttaagatgagttatagccctatattcatacttagattcaa 366  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  4597944 ttaagatgagttatagccctaaattcatacttagattcaa 4597983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 23512828 - 23512736
Alignment:
Q  6 tcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||| ||||||| ||| |||||||| ||||||||||||||||| || |||   ||||| || |||| ||||| |||||| ||||| |||||    
T  23512828 tcttgggaattgtgcattcaagacattgaaacaacaaaaagtaacattttctccataaaatttgtcaattatttctattttggaatctttaac 23512736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 43767311 - 43767392
Alignment:
Q  6 tcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatattttt 87  Q
    ||||| || ||||| ||| || ||||||||||| |||||||||| ||| ||||  ||||| ||||||| | |||||||||||    
T  43767311 tcttgaaatttgtgcattcaacacattaaaacatcaaaaagtaattttttctacataaaatttatcaattgtttatattttt 43767392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 182 - 373
Target Start/End: Original strand, 227274 - 227465
Alignment:
Q  182 gtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataatcatgtgatgaatcggtggaagt 281  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||| | | ||||||||| ||||| ||    
T  227274 gtctttgttgaaaattaaattaagaaatcattcgtttataatttgtcttatgttggatttaagaaagtagaacataaccttatgatgaatctgtggacgt 227373  T
Q  282 ttattttaatctctgctattcgaccgttcaaatagtggggctcccttaagatgagttatagccctatattcatacttagattcaattatatt 373  Q
    ||||||| ||| |  | ||||| |||| ||||| | | || || || ||||||||||||||||||| |||  ||||||||||||||||||||    
T  227374 ttattttgatccccacaattcgtccgtgcaaattgcgagggtctctaaagatgagttatagccctaaatttgtacttagattcaattatatt 227465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 172 - 381
Target Start/End: Original strand, 20518350 - 20518562
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatg-ttagaattaagaaagtataacataatcatgtgatgaa 270  Q
    |||||||||| |||||| || ||||||||| ||||||||||| ||||||||||||||| ||| || || ||||||||||| ||||||| |  ||||||||    
T  20518350 tccccccttcatctttgctggaaattaaatcaagaaatcattggtttataacttgtctcatgtttggatttaagaaagtagaacataa-cccgtgatgaa 20518448  T
Q  271 tcggtggaagtttatttta--atctctgctattcgaccgttca-aatagtggggctcccttaagatgagttatagccctatattcatacttagattcaat 367  Q
    || ||||||||||||||||  ||| |||| |||| ||| || | ||| | || | ||| |||||| |||||||||||||| |||||||||||||||||||    
T  20518449 tcagtggaagtttattttaacatccctgcaattcaaccatttacaattgcggagttccgttaagacgagttatagccctaaattcatacttagattcaat 20518548  T
Q  368 tatattaaaaacta 381  Q
    ||||||| ||||||    
T  20518549 tatattagaaacta 20518562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 25460817 - 25460759
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  25460817 tcccttaagttgagttatagccctaaattcatactttgattcaattatattagaaacta 25460759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 27917114 - 27917201
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttat-gttagaattaagaaagtataacataa 258  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||  |||||  || || ||||||||||| |||||||    
T  27917114 tcccctctacgtctttgttggaaattaaattaagaaataattcgtttataactttccttatctttggatttaagaaagtagaacataa 27917201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 14921311 - 14921365
Alignment:
Q  327 ttaagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    |||||||||||||||||| || ||||||| ||| |||||||||||||| ||||||    
T  14921311 ttaagatgagttatagccataaattcatagttaaattcaattatattagaaacta 14921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 18819537 - 18819491
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaatta 369  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  18819537 tcccttaagatgagtcatagccctaaattcatacttagattcgatta 18819491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 24188897 - 24188846
Alignment:
Q  329 aagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| ||||||    
T  24188897 aagatgagttgtagcc-taaattcatacttagattcaattatattagaaacta 24188846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 16011887 - 16011796
Alignment:
Q  6 tcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaa 97  Q
    |||||||| || || ||| || ||||||||| | |||||| ||| ||| | ||  ||||| ||||||| |||||||||||||||||||||||    
T  16011887 tcttggaatttatgtattaaacacattaaaaaatcaaaaaataattttttttacataaaagttatcaattatttatatttttgaatccttaa 16011796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 4825955 - 4826048
Alignment:
Q  5 ttcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||| |||||||| |||| | ||||| ||||||| |||| ||||||| | || |||||  || |||| ||||| |||||||||||| |||||    
T  4825955 ttcttgaaaattgtgcatttcaaacattgaaacaacgaaaaataactttttatacctaaattttttcaattatttttatttttgaatcattaac 4826048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 12880141 - 12880198
Alignment:
Q  41 aaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    ||||||||| ||| ||||  ||||||||||||| |||||  |||||||||||||||||    
T  12880141 aaaaagtaattttttctacataaaacttatcaattatttccatttttgaatccttaac 12880198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 27917272 - 27917320
Alignment:
Q  333 tgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    |||||||||||||||  |||||||| ||||| |||||||||| ||||||    
T  27917272 tgagttatagccctaagttcatactcagatttaattatattagaaacta 27917320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 172 - 355
Target Start/End: Complemental strand, 18789915 - 18789728
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatg-ttagaattaagaaagtataacataatcatgtgatgaa 270  Q
    ||||||||||||||| ||||||||||||||  || ||| ||| ||||||||||||||||||| || || |||||||||||||||||||    ||||||||    
T  18789915 tccccccttcgtcttcgttgaaaattaaatcgagtaattattagtttataacttgtcttatgtttggatttaagaaagtataacataactccgtgatgaa 18789816  T
Q  271 tcggtggaagtttatttta--atctctgctattcgaccgttca-aatagtggggctcccttaagatgagttatagccctatattcata 355  Q
    |  ||||||||||||||||  ||| |||| |||| | | || | ||| |||||| ||||||||||||||||||||||||| |||||||    
T  18789815 ttagtggaagtttattttaatatccctgcaattcaatcatttacaattgtggggttcccttaagatgagttatagccctaaattcata 18789728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 30544757 - 30544641
Alignment:
Q  177 ccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatg-ttagaattaagaaagtataacataatcatgtgatgaatcggt 275  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||| ||||||| || || || |||||||| ||||||| |  |||||||||| ||    
T  30544757 ccttcgtctttgttgaaaattaaatatagaaatcattagtttataacttttcttatgtttggatttgagaaagtagaacataaccccgtgatgaatcagt 30544658  T
Q  276 ggaagtttattttaatc 292  Q
    | || ||||||||||||    
T  30544657 gaaattttattttaatc 30544641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 13582836 - 13582889
Alignment:
Q  328 taagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    ||||||||||||||||| || ||||||||||| |||||||||| ||| ||||||    
T  13582836 taagatgagttatagccttaaattcatacttatattcaattattttagaaacta 13582889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 5221078 - 5221037
Alignment:
Q  12 aaattgtggatttaagacattaaaacaacaaaaagtaacttt 53  Q
    |||||||| |||||||||||| |||||| |||||||||||||    
T  5221078 aaattgtgcatttaagacattgaaacaataaaaagtaacttt 5221037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 18771835 - 18771771
Alignment:
Q  316 gtggggctcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    |||||| |||||||| |||||||||| ||||| ||||||||  || ||||||||||||| ||||||    
T  18771835 gtggggttcccttaaaatgagttatatccctaaattcataccaag-ttcaattatattagaaacta 18771771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 11766574 - 11766482
Alignment:
Q  7 cttggaaattgtggatttaagacattaaaacaacaaaaagtaa-ctttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||| |||||||| ||| |||||||| ||||||||||||||||  ||| ||||  ||||| ||| ||| ||| | |||||||||||| |||||    
T  11766574 cttgaaaattgtgcattcaagacattgaaacaacaaaaagtaatttttttctacataaaatttaacaaatatctctatttttgaatctttaac 11766482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 172 - 355
Target Start/End: Complemental strand, 10924928 - 10924741
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatg-ttagaattaagaaagtataacataatcatgtgatgaa 270  Q
    ||||||||||||||| ||||||||||||||  || ||| ||| ||||||||||||||||||| || || |||||||||||||||||||    ||||||||    
T  10924928 tccccccttcgtcttcgttgaaaattaaatcgagtaattattagtttataacttgtcttatgtttggatttaagaaagtataacataactccgtgatgaa 10924829  T
Q  271 tcggtggaagtttatttta--atctctgctattcgaccgttca-aatagtggggctcccttaagatgagttatagccctatattcata 355  Q
    |  ||||||||||||||||  ||| |||| |||| | | || | ||| |||||| ||||||||||||||||||||||||| |||||||    
T  10924828 ttagtggaagtttattttaatatccctgcaattcaatcatttacaattgtggggttcccttaagatgagttatagccctaaattcata 10924741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 291
Target Start/End: Original strand, 9455214 - 9455332
Alignment:
Q  174 cccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatg-ttagaattaagaaagtataacataatcatgtgatgaatc 272  Q
    ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||| | || |||||| ||||||| |   |||||||||    
T  9455214 cccccttcgtctttgttgaaaattaaattgagtaatcattggtttataacttgtcttatgtttagattaaataaagtagaacataaccccatgatgaatc 9455313  T
Q  273 ggtggaagtttattttaat 291  Q
      |||||||||||| ||||    
T  9455314 aatggaagtttattctaat 9455332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 28084828 - 28084908
Alignment:
Q  11 gaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaat 91  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||| |||| |||||| ||||||| |||||||||||||||||    
T  28084828 gaaattgtgcatttaagacattaaaacaacaaaaaataattttttctacctaaaatttatcaattatttatatttttgaat 28084908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 369
Target Start/End: Complemental strand, 13709074 - 13708873
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaatt-aagaaagtataacataatcatgtgatgaa 270  Q
    ||||| ||| |||||||||| ||||||| |  |  ||| ||| |||||| ||||| |||||||| | ||| ||||||||| ||||||| | | | |||||    
T  13709074 tcccctctttgtctttgttggaaattaactggattaattattagtttatgacttgccttatgtttggatttaagaaagtagaacataaacctattatgaa 13708975  T
Q  271 tcggtggaagtttattttaatctc--tgctattcgaccgttca-aatagtggggctcccttaagatgagttatagccctatattcatacttagattcaat 367  Q
    || | |||||||||||||||| ||  ||| |||| | | || | |||  ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  13708974 tcaggggaagtttattttaatatccctgcaattcaatcatttacaattctggggttcccttaagatgagttatagccctaaattcatacttagattcaat 13708875  T
Q  368 ta 369  Q
    ||    
T  13708874 ta 13708873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 21536633 - 21536708
Alignment:
Q  183 tctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataa 258  Q
    |||| |||| |||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||| |||||||    
T  21536633 tcttcgttggaaattaaattaagaaatcattcatttacaacttgtcttatgttggatttaagaaagtagaacataa 21536708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 9760996 - 9760940
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaac 379  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  9760996 tccctaaagatgagttatagccctaaattcatactaagattcaattatattagaaac 9760940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 291
Target Start/End: Complemental strand, 11082568 - 11082466
Alignment:
Q  190 tgaaaattaaattaagaaatcattcgtttataacttgtcttatg-ttagaattaagaaagtataacataatcatgtgatgaatcggtggaagtttatttt 288  Q
    ||||||||||||  || ||| |||||||||||| |||||||||| || || ||||||||||| |||||||   | |||||||| |||||||||||| |||    
T  11082568 tgaaaattaaatcgagtaattattcgtttataatttgtcttatgtttggatttaagaaagtagaacataactctatgatgaattggtggaagtttacttt 11082469  T
Q  289 aat 291  Q
    |||    
T  11082468 aat 11082466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 29559163 - 29559252
Alignment:
Q  8 ttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||||||||| ||| |||||||||||| |||||||| || |||| | |   ||||| ||||||| ||||||||||||||||||||||||    
T  29559163 ttggaaattgtgcattcaagacattaaaataacaaaaa-tacctttttatccataaaatttatcaattatttatatttttgaatccttaac 29559252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 9801437 - 9801381
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaac 379  Q
    ||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| ||||    
T  9801437 tccctaaagatgagttataaccctaaattcatactaagattcaattatattataaac 9801381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 21536775 - 21536822
Alignment:
Q  329 aagatgagttatagccctatattcatacttagattcaattatattaaa 376  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  21536775 aagatgagttataaccctaaattcatgcttagattcaattatattaaa 21536822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 22334518 - 22334570
Alignment:
Q  317 tggggctcccttaagatgagttatagccctatattcatacttagattcaatta 369  Q
    ||||| |||||||||||||| |||| ||||| ||||||| |||||||||||||    
T  22334518 tggggttcccttaagatgaggtataaccctacattcataattagattcaatta 22334570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 8607239 - 8607181
Alignment:
Q  193 aaattaaattaagaaatcattcgtttataacttgtcttatgttagaa-ttaagaaagta 250  Q
    |||||||||  |||||||||| ||||||||||||||||||| | ||| |||||||||||    
T  8607239 aaattaaatcgagaaatcattagtttataacttgtcttatgcttgaatttaagaaagta 8607181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 38663664 - 38663750
Alignment:
Q  12 aaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||||| ||||||  |||| ||||   ||||||||||||| | ||| ||||| ||||||| ||||| |||||||| |||||||||    
T  38663664 aaattgtgtatttaatgcattgaaactttaaaaagtaactttttatatttaaaatttatcaattatttctatttttgtatccttaac 38663750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 47188462 - 47188532
Alignment:
Q  28 acattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    ||||||||| | |||||||||||||| ||||  ||||| |||| || | ||| ||||||||||||||||||    
T  47188462 acattaaaatatcaaaaagtaactttttctacataaaagttattaattgtttctatttttgaatccttaac 47188532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 9552960 - 9552904
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaac 379  Q
    ||||| |||||||| |||| || || ||||||||| |||||||||||||||| ||||    
T  9552960 tccctaaagatgaggtataaccttaaattcatactaagattcaattatattataaac 9552904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 44107031 - 44107087
Alignment:
Q  41 aaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaa 97  Q
    ||||||||| ||| ||||  ||||||||||||| |||||||||||| |||| |||||    
T  44107031 aaaaagtaattttttctacataaaacttatcaattatttatattttagaattcttaa 44107087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 172 - 347
Target Start/End: Complemental strand, 13066698 - 13066522
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataatcatgtgatgaat 271  Q
    |||| ||||||||||||||| |||||| || || ||||||||||| |||||||||||||||  |  | ||||||||||| ||||||| |  |||||||||    
T  13066698 tccctccttcgtctttgttggaaattagataaataaatcattcgtctataacttgtcttataatgcatttaagaaagtagaacataacctcgtgatgaat 13066599  T
Q  272 cggtggaagtttattttaatctctgctattcgaccgttcaaatagtgggg-ctcccttaagatgagttatagcccta 347  Q
      ||  || |||||||||||| | || |||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  13066598 tagtcaaaatttattttaatccccgcaattcgaccgttcaaattgtggggtttcccttaagatgagttatagcccta 13066522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 172 - 381
Target Start/End: Complemental strand, 29438473 - 29438259
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatg-ttagaattaagaaagtataacataatcatgtgatgaa 270  Q
    |||||| ||||||||||||| |||||||||| |||||||||| |||||||||||| |||||| ||||| |||| |||||| |||||||    ||||||||    
T  29438473 tcccccattcgtctttgttggaaattaaatttagaaatcattagtttataacttgccttatgtttagatttaataaagtagaacataactccgtgatgaa 29438374  T
Q  271 tcggtggaag-tttatttta--atctctgctattcgacc-gttcaaatagtggggctcccttaagatgagttatagccctatattcatacttagattcaa 366  Q
    || ||||||| |||||||||  ||| |  | |||| |||  ||  ||| |||||| ||||||||||||||||||| ||||| ||||||| ||| |||| |    
T  29438373 tcagtggaagttttattttaacatcccctcaattcaaccacttacaattgtggggttcccttaagatgagttataaccctaaattcatatttaaattcga 29438274  T
Q  367 ttatattaaaaacta 381  Q
    |||||||| ||||||    
T  29438273 ttatattagaaacta 29438259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 374
Target Start/End: Original strand, 17183693 - 17183896
Alignment:
Q  174 cccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtctta-tgttagaattaagaaagtataacataatcatgtgatgaatc 272  Q
    |||| ||| ||||||||| |||||||||  |||||||| | ||||||||||||||||| | || || ||||||||||| ||||||| ||||||||||||     
T  17183693 ccccattcatctttgttggaaattaaatcgagaaatcagtagtttataacttgtcttatttttggatttaagaaagtagaacataaacatgtgatgaatt 17183792  T
Q  273 ggtggaagtttattttaa--tctctgctattcgaccgttcaaatagtggggctcccttaagatgagttatagccctatattcatacttagattcaattat 370  Q
     ||||||||||  |||||  || |  | |||| ||| ||  ||| ||  || ||||||||||||||||||| ||||  ||||||||||||| ||||||||    
T  17183793 agtggaagttttatttaacgtccccacaattcaaccattacaattgtaaggttcccttaagatgagttatatccctgaattcatacttagagtcaattat 17183892  T
Q  371 atta 374  Q
    ||||    
T  17183893 atta 17183896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 48051714 - 48051787
Alignment:
Q  25 aagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||||| |||||||||||||||||||| ||||  ||||| ||||||| ||||| ||||||||||||||||||    
T  48051714 aagacattgaaacaacaaaaagtaactttttctacataaaatttatcaattatttctatttttgaatccttaac 48051787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 42498617 - 42498543
Alignment:
Q  175 ccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagta 250  Q
    ||||||||||||||||| || |||||| |||||||||||||||||||||||| ||||| || || |||||||||||    
T  42498617 ccccttcgtctttgttggaatttaaataaagaaatcattcgtttataacttg-cttatattggatttaagaaagta 42498543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 19602805 - 19602730
Alignment:
Q  183 tctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataa 258  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||  ||||| ||  | ||||||||||| |||||||    
T  19602805 tctttgttggaaattaaattaagaattcattcatttataactttccttatattgtatttaagaaagtagaacataa 19602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 34701297 - 34701206
Alignment:
Q  7 cttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    ||||||||||||  ||| || | ||||||||||||||| |||||||| ||||  ||||||| |||||  |||| || |||||||||||||||    
T  34701297 cttggaaattgtacattcaacaaattaaaacaacaaaaggtaactttttctacataaaactcatcaatcatttctaattttgaatccttaac 34701206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 374
Target Start/End: Complemental strand, 19602660 - 19602618
Alignment:
Q  332 atgagttatagccctatattcatacttagattcaattatatta 374  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  19602660 atgagttatagccttacattcatacttagattcaattatatta 19602618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 21078045 - 21077999
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaatta 369  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  21078045 tcccttaagatgagtcatagccctaaattcatacttagattcgatta 21077999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 20984828 - 20984891
Alignment:
Q  318 ggggctcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    |||| ||||||||||||||||||| | ||| |||||||||||  ||||||||| ||| ||||||    
T  20984828 ggggatcccttaagatgagttataactctaaattcatacttaagttcaattattttagaaacta 20984891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 31917636 - 31917722
Alignment:
Q  12 aaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||||| |||||| ||||| |||||||||||| | | ||| ||||  ||||| |||| || ||| | ||||||||||||||||||    
T  31917636 aaattgtgcatttaaaacattgaaacaacaaaaaattattttttctacataaaatttataaattatatttatttttgaatccttaac 31917722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 20984677 - 20984730
Alignment:
Q  172 tccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataactt 225  Q
    |||||||||||| ||||||| | |||||||  |||||||||| |||||||||||    
T  20984677 tccccccttcgtatttgttggagattaaatcgagaaatcattagtttataactt 20984730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 54623017 - 54623078
Alignment:
Q  28 acattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttga 89  Q
    ||||| |||||||||||||||||| | ||||||||||  | ||||||  |||||||||||||    
T  54623017 acattgaaacaacaaaaagtaactatttctatctaaatttcatcaaccgtttatatttttga 54623078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 56128672 - 56128591
Alignment:
Q  12 aaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatcc 93  Q
    |||||||| ||| || ||||| |||||||||||||||||||| |||| |||||  | || ||  |||| |||||||||||||    
T  56128672 aaattgtgcattcaacacattgaaacaacaaaaagtaactttttctacctaaatttcataaatcatttctatttttgaatcc 56128591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 28179029 - 28178954
Alignment:
Q  175 ccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagta 250  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  28179029 ccccttcctctttgttggaaattacattaagaaatcattcgtttataacttgtctaatattagatttaagaaagta 28178954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 29129390 - 29129304
Alignment:
Q  11 gaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaa 97  Q
    ||||||||  ||||| |||||| |||||||||||||||| | | ||||| ||||| ||||||| ||||| ||||||| |||||||||    
T  29129390 gaaattgtacatttaggacattgaaacaacaaaaagtaattctttctatttaaaatttatcaattatttctatttttaaatccttaa 29129304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 29301805 - 29301713
Alignment:
Q  6 tcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||||||||||| ||| || | ||| ||||||||||||||||| || |||  |||||  | |||||  |||| || |||||||||||||||    
T  29301805 tcttggaaattgtgcattcaacatattgaaacaacaaaaagtaacattttctgcctaaacttcatcaatcatttttaattttgaatccttaac 29301713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 13326 - 13232
Alignment:
Q  178 cttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataatcatgtgatgaatc 272  Q
    |||| ||||||||| |||||||||||||||||||||| | ||||||||| ||||| || || |||||||||||||||| || | |||||||||||    
T  13326 cttcatctttgttggaaattaaattaagaaatcattcttgtataacttgccttatattggatttaagaaagtataacacaaccttgtgatgaatc 13232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 13186 - 13128
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    ||||| ||||| ||| ||| ||||| |||||||||||||||||||||||||| ||||||    
T  13186 tccctaaagattagtaatatccctaaattcatacttagattcaattatattagaaacta 13128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 381
Target Start/End: Original strand, 18281280 - 18281489
Alignment:
Q  176 cccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaag-aaagtataacataatcatgtgatgaatcgg 274  Q
    ||||||||||| |||  |||||||||  |||||||||| ||||||||| ||||||||||| | ||| || |||||| |||||||  |||||||||||  |    
T  18281280 cccttcgtcttggttagaaattaaatatagaaatcattagtttataacatgtcttatgtttggatttaggaaagtagaacataactatgtgatgaattag 18281379  T
Q  275 tggaagtttattttaatctctgct--attcgaccgttca-aatagtggggctcccttaagatgagttatagccctatattcatacttagattcaattata 371  Q
    ||||||| |  |||||| ||  |   |||| ||| || | ||| | || | || |||||||||||||||| ||||| |||||||||||||||||||||||    
T  18281380 tggaagtattatttaatgtccccacaattcaaccatttacaattgcggagttctcttaagatgagttataaccctaaattcatacttagattcaattata 18281479  T
Q  372 ttaaaaacta 381  Q
    ||| ||||||    
T  18281480 ttagaaacta 18281489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 381
Target Start/End: Original strand, 22643075 - 22643219
Alignment:
Q  240 ttaagaaagtataacataatcatgtgatgaatcggtggaagtttattttaatctct--gctattcgaccgttca-aatagtggggctcccttaagatgag 336  Q
    ||||||||||| ||||||| |||||||||||||| || |||||||||| ||| ||   || |||  |||  | | ||| |||||  | ||||||||||||    
T  22643075 ttaagaaagtagaacataaccatgtgatgaatcgttgcaagtttatttcaatatcctcgcaatttaaccaattacaattgtgggatttccttaagatgag 22643174  T
Q  337 ttatagccctatattcatacttagattcaattatattaaaaacta 381  Q
    ||||| ||||| || |||||||| ||||||||| |||||||||||    
T  22643175 ttatatccctaaatccatacttaaattcaattaaattaaaaacta 22643219  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 15693112 - 15693158
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaatta 369  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  15693112 tcccttaagatgagttatagctctaaattcatatttagattcaatta 15693158  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 9857800 - 9857885
Alignment:
Q  10 ggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatcctta 96  Q
    |||||||||| |||||| ||||| ||||||||||||| |||||| |||| |||||  | |||||  |||| || |||||||||||||    
T  9857800 ggaaattgtgcatttaacacattgaaacaacaaaaag-aactttttctacctaaatttcatcaatcatttctaattttgaatcctta 9857885  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 41174393 - 41174301
Alignment:
Q  6 tcttggaaattgtggatttaagacattaaaacaacaaaaagtaactttctctatctaaaacttatcaactatttatatttttgaatccttaac 98  Q
    |||||||| ||||| |||||| ||||| ||| |  ||||||||||||| || |  ||||| ||| ||| ||||| | ||||||||||||||||    
T  41174393 tcttggaagttgtgcatttaacacattgaaatattaaaaagtaactttgtcaacataaaatttaacaattatttctctttttgaatccttaac 41174301  T

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Target: scaffold0042 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 89333 - 89249
Alignment:
Q  174 cccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataa 258  Q
    |||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| || || |||||||| || |||||||    
T  89333 cccccttcgtctttgttggaaattaaattaataaatcattcatttataacttgccttatattggatttaagaaattagaacataa 89249  T

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Target: scaffold0186 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 374
Target Start/End: Original strand, 32824 - 33013
Alignment:
Q  186 ttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaatt-aagaaagtataacataa-tcatgtgatgaatcggtggaagttt 283  Q
    |||||| |||||||||  |||||||||| | ||||||||||||||||||| | ||| ||||||||| ||||||| |||  ||||||||  ||| || |||    
T  32824 ttgttggaaattaaatatagaaatcattaggttataacttgtcttatgtttggatttaagaaagtaaaacataactcaa-tgatgaataagtgaaaattt 32922  T
Q  284 attttaatctctgctattcgaccgttca-aatagtggggctcccttaagatgagttatagccctatattcatacttagattcaattatatta 374  Q
    | ||||||||   | |||| ||| || | ||| |||||| |||||||| |||||||||||||||| | |||||||||| |||||||||||||    
T  32923 actttaatcttcccaattcaaccatttacaattgtggggttcccttaaaatgagttatagccctaaaatcatacttag-ttcaattatatta 33013  T

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Target: scaffold0804 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 742 - 695
Alignment:
Q  323 tcccttaagatgagttatagccctatattcatacttagattcaattat 370  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||    
T  742 tccctgaagatgagttatagccataaattcatacttagattcaattat 695  T

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Target: scaffold0804; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 885 - 823
Alignment:
Q  173 ccccccttcgtctttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgtt 235  Q
    |||| |||||||||||||| |||||||||  | |||| ||| |||||||| ||||||||||||    
T  885 ccccacttcgtctttgttggaaattaaatacataaattattagtttataatttgtcttatgtt 823  T

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Target: scaffold0107 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 32686 - 32613
Alignment:
Q  185 tttgttgaaaattaaattaagaaatcattcgtttataacttgtcttatgttagaattaagaaagtataacataa 258  Q
    ||||||| |||||||||||||||||||||| |||  |||||  ||||| || |||||||| ||||| |||||||    
T  32686 tttgttggaaattaaattaagaaatcattcattttaaactttccttatattggaattaagcaagtagaacataa 32613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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