View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19493_low_9 (Length: 397)
Name: NF19493_low_9
Description: NF19493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19493_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 99 - 397
Target Start/End: Complemental strand, 42210668 - 42210372
Alignment:
| Q |
99 |
aaataaagcattagtatttatgagtannnnnnnagggagtagttaatttttcatacattatccaaccctttacctcgcaataaattacttttacgtcttt |
198 |
Q |
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| T |
42210668 |
aaataaagcattagtatttatgagtatttttttagggagtagttaatttttcatacattatccaaccctttacctcacaataaattacttttacgtcttc |
42210569 |
T |
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| Q |
199 |
ctnnnnnnnntattacttcttctctttgacactcaaattggtcaactacattacattatacacataacttgagacgcatggatagaccactcataatgct |
298 |
Q |
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| T |
42210568 |
ctataaaaaatattacttcttctctttgacactcaaattgatcaactacattacattatacacataacttgagacgcatggatagaccactcataatgct |
42210469 |
T |
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| Q |
299 |
cctcgttcacatttcatgcttaatattcaacacgccattttgagcgtctttatatgctcagagtaccctcatgcacctaagcatccatcatgaaatgtg |
397 |
Q |
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| T |
42210468 |
cctcgttcacatttcatgcttaatattcagcac-acattttgagcgtctttatatgttcagagta-cctcatgcacctaagcatccatcatgaaatgtg |
42210372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42210766 - 42210734
Alignment:
| Q |
1 |
cctccttcaaaaatactttctcaaacttagaga |
33 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
42210766 |
cctccttcaaaaatactttctcaaagttagaga |
42210734 |
T |
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