View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_high_1 (Length: 548)
Name: NF19494_high_1
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 221 - 537
Target Start/End: Complemental strand, 48403200 - 48402884
Alignment:
| Q |
221 |
taacaagtttattagaaagaatggcacttcaattttatctcaaagtgtaaacttcagatctcatgctggtgcatgttgtgtaaaaatttgaatggcttgt |
320 |
Q |
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| T |
48403200 |
taacacgtttattagaaagaatggcacttcaattttatctcaaagtgtaaacttcagatctcatgctggtgtatgttgtgtaaaaatttgaatggcttgt |
48403101 |
T |
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| Q |
321 |
tttttgtaaattacaatgctgcatgaaggtgtgggaattggaaaatggtgtttgttgcacgtgacttgttttcctcccatgcatgtgtggaatagtgttg |
420 |
Q |
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| T |
48403100 |
tttttgtaaattacaatgctgcatgaaggtgtgggaattggaaaatggtgtttgttgcacgtgacttgttttcctcccatgcatgtgtggaatagtgttg |
48403001 |
T |
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| Q |
421 |
tgatcgagccattaaataaggaggaagggtgagattattgatatagggactcaattgtgatgaagtgttcttacaacgtgctcatcgaattgttgttgaa |
520 |
Q |
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| T |
48403000 |
tggtcgagctattatataaggaggaagggtgagattattgatatagggactcaattgtgatgaagtgttcttacaacgtgctcatcgaattgttgttgaa |
48402901 |
T |
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| Q |
521 |
gattaacaagattgatg |
537 |
Q |
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| T |
48402900 |
gattaacaagattgatg |
48402884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 48404375 - 48404277
Alignment:
| Q |
1 |
tttagaggtgtcacctaagaatataattgacatggcgaaaattagattacataacatgcatataatcgattgagtgttagcaaaatagtttgagagtcta |
100 |
Q |
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| T |
48404375 |
tttagaggtgtcacctaagaatataattgacatggcgaaaattatattacataa----catataatcgattgagtgttagcaaaatagtttgagagtcta |
48404280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 48404073 - 48404011
Alignment:
| Q |
161 |
ctttgttattctaaaagtatggaaataataatcttcctcctttgacaaagtaaacgttggtaa |
223 |
Q |
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| T |
48404073 |
ctttgttattctaaaagtatggaaataataatcttcctcctttgacaaagtaaacgttggtaa |
48404011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 51273726 - 51273767
Alignment:
| Q |
234 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
275 |
Q |
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| T |
51273726 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
51273767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 400
Target Start/End: Original strand, 51274527 - 51274557
Alignment:
| Q |
370 |
gtttgttgcacgtgacttgttttcctcccat |
400 |
Q |
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| T |
51274527 |
gtttgttgcacgtgacttgttttcctcccat |
51274557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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