View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19494_high_20 (Length: 298)

Name: NF19494_high_20
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19494_high_20
NF19494_high_20
[»] chr2 (15 HSPs)
chr2 (11-250)||(8417679-8417915)
chr2 (16-218)||(8375338-8375537)
chr2 (16-218)||(8439566-8439765)
chr2 (78-217)||(8394788-8394924)
chr2 (78-217)||(8406405-8406541)
chr2 (78-217)||(8412525-8412661)
chr2 (78-217)||(8434623-8434759)
chr2 (84-217)||(8395031-8395161)
chr2 (247-282)||(8417955-8417990)
chr2 (216-250)||(8375227-8375261)
chr2 (78-156)||(8431553-8431631)
chr2 (216-250)||(8439842-8439876)
chr2 (247-280)||(8375146-8375179)
chr2 (247-280)||(8439924-8439957)
chr2 (16-53)||(41119333-41119370)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 8417679 - 8417915
Alignment:
Q  11 caaaggagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaata 110  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||    
T  8417679 caaaagagcagaagataacttcaaagccaaaagtgatgaatctgagcaagtagtgggaacagtagcagcaagaccagacatggttgtagcagtgagagta 8417778  T
Q  111 atcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaaga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  8417779 atcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcaca---aatgttgtgatgcatttcaattctgtcagaaacaacttccaaga 8417875  T
Q  211 ctgcatattattcctttctaattgatctttggatccatta 250  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  8417876 ctgcatattattcctttctaattgatctttgaatccatta 8417915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 8375537 - 8375338
Alignment:
Q  16 gagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaataatcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  8375537 gagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaacaccagacatggttgtagcagtaagagtaatcat 8375438  T
Q  116 gttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgca 215  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| |    |||||| ||||||||||||| ||| ||||||||  ||||||||| ||||    
T  8375437 gttgatggagttcaagagaagagtgttccaattgttacgctgttcgc---caatgttttgatgcatttcaactctatcagaaactgcttccaagattgca 8375341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 8439566 - 8439765
Alignment:
Q  16 gagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaataatcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  8439566 gagcagaagataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaacaccagacatggttgtagcagtaagagtaatcat 8439665  T
Q  116 gttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgca 215  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||| |    |||||| ||||||||||||| ||| ||||||||  ||||||||| ||||    
T  8439666 gttgatggagttcaagagaagagtgttccaattgctacgctgttcgc---caatgttttgatgcatttcaactctatcagaaactgcttccaagattgca 8439762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 8394924 - 8394788
Alignment:
Q  78 gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat 177  Q
    |||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| |    |||||||||||    
T  8394924 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat 8394828  T
Q  178 gcatttcaattctgtcagaaacaacttccaagactgcata 217  Q
    ||||||| |||||||| || ||| ||||||||||||||||    
T  8394827 gcatttctattctgtctgatacagcttccaagactgcata 8394788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 8406405 - 8406541
Alignment:
Q  78 gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat 177  Q
    |||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| |    |||||||||||    
T  8406405 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat 8406501  T
Q  178 gcatttcaattctgtcagaaacaacttccaagactgcata 217  Q
    ||||||| |||||||| || ||| ||||||||||||||||    
T  8406502 gcatttctattctgtctgatacagcttccaagactgcata 8406541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 8412525 - 8412661
Alignment:
Q  78 gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat 177  Q
    |||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| |    |||||||||||    
T  8412525 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat 8412621  T
Q  178 gcatttcaattctgtcagaaacaacttccaagactgcata 217  Q
    ||||||| |||||||| || ||| ||||||||||||||||    
T  8412622 gcatttctattctgtctgatacagcttccaagactgcata 8412661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 8434623 - 8434759
Alignment:
Q  78 gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat 177  Q
    |||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| |    |||||||||||    
T  8434623 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat 8434719  T
Q  178 gcatttcaattctgtcagaaacaacttccaagactgcata 217  Q
    ||||||| |||||||| || ||| ||||||||||||||||    
T  8434720 gcatttctattctgtctgatacagcttccaagactgcata 8434759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 8395161 - 8395031
Alignment:
Q  84 ccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcattt 183  Q
    |||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| |    |||||||||||||||||    
T  8395161 ccagacatggttgtagcagtgagagtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgatgcattt 8395065  T
Q  184 caattctgtcagaaacaacttccaagactgcata 217  Q
    | |||||||| || ||| ||||||||||||||||    
T  8395064 ctattctgtctgatacagcttccaagactgcata 8395031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 8417955 - 8417990
Alignment:
Q  247 attagacaaacttgggagttttggaagatggataac 282  Q
    ||||||||||||||||||||||||||||||||||||    
T  8417955 attagacaaacttgggagttttggaagatggataac 8417990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 8375261 - 8375227
Alignment:
Q  216 tattattcctttctaattgatctttggatccatta 250  Q
    ||||||||||||||| |||||||||||||||||||    
T  8375261 tattattcctttctatttgatctttggatccatta 8375227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 8431553 - 8431631
Alignment:
Q  78 gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgtt 156  Q
    |||| ||||||||| ||  ||||||||||| |||||||||| || || ||||| |||||| | ||||| ||||||||||    
T  8431553 gcaacaccagacatagtcttagcagtgagagtaatcatgtttattgagttcaaaagaagattattccagttgttacgtt 8431631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 8439842 - 8439876
Alignment:
Q  216 tattattcctttctaattgatctttggatccatta 250  Q
    ||||||||||||||| |||||||||||||||||||    
T  8439842 tattattcctttctatttgatctttggatccatta 8439876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 8375179 - 8375146
Alignment:
Q  247 attagacaaacttgggagttttggaagatggata 280  Q
    ||||||||||||||| ||||||||||||||||||    
T  8375179 attagacaaacttggtagttttggaagatggata 8375146  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 8439924 - 8439957
Alignment:
Q  247 attagacaaacttgggagttttggaagatggata 280  Q
    ||||||||||||||| ||||||||||||||||||    
T  8439924 attagacaaacttggtagttttggaagatggata 8439957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 41119333 - 41119370
Alignment:
Q  16 gagcagaagataacttcaaagccaaaagtgatgaatca 53  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  41119333 gagcataagacaacttcaaagccaaaagtgatgaatca 41119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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