View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19494_high_28 (Length: 249)
Name: NF19494_high_28
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 43199969 - 43199745
Alignment:
| Q |
8 |
agattatactccttctagtaccttaacaaattaaattacacccaaatatcgactaggcttagtcaatgggaatcacatgccatatggcacgcttagctaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43199969 |
agattatactccttctagtaccttaacaaattaaattacacccaaatatcgactaggcttagtcaatgggaatcacatgccatatggcacgcttagctaa |
43199870 |
T |
|
| Q |
108 |
ttcactgcacgtgcagtgcacgtcattatgtaacaaaattttctaccctcttcataaggaaaatgaagtcctttattctgtgtggcttacattggcctaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43199869 |
ttcactgcacgtgcagtgcacgtcattatgtaacaaaattttctaccctcttcatcaggaaaatgaagtcctttattctgtgtggcttacattggcctaa |
43199770 |
T |
|
| Q |
208 |
ggttggtcagattaatggcttacat |
232 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
43199769 |
ggttgctcagattaatggcttacat |
43199745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 43199754 - 43199721
Alignment:
| Q |
190 |
tggcttacattggcctaaggttggtcagattaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43199754 |
tggcttacattggcctaaggttggtcagattaat |
43199721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University