View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19494_high_3 (Length: 491)
Name: NF19494_high_3
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 472
Target Start/End: Original strand, 30459407 - 30459864
Alignment:
| Q |
14 |
attatactaataa-gatttaagatgatacatcgagttctccctaaattgagaacaacacatttattgatttgaaaataagtacttattatattatttgtt |
112 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30459407 |
attatactaataaagatttaagataataaatcaagttctccctaaattgagaacaaca--tttattgatttgaaaataagtacttattatattatttctt |
30459504 |
T |
|
| Q |
113 |
acttatcccaatgaaagcaaatagggtccccatgctcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaattatctaaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459505 |
acttatcccaatgaaagcaaatagggtccccatgttcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaattatctaaatt |
30459604 |
T |
|
| Q |
213 |
gcgaacaccctgtatgtatatatcaaaatgatgaaattcacctgtccatgcaaaggaacaaaagtaaagtgtttggaacaaaatcggaggaaatctagga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459605 |
gcgaacaccctgtatgtatatatcaaaatgatgggattcactggtccatgcaaaggaacaaaagtaaagtgtttggaacaaaatcggaggaaatctagga |
30459704 |
T |
|
| Q |
313 |
ctaaatttccaactaaagctttgtccatgatgcagaaattgaactccaagatcatcctctttagatttgcaatgaagggttaagtccatatttccttcca |
412 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30459705 |
ctaaatttccaactaaagctttgaccatgatgcagaagttgaactccaagatcatcctctttggatttgcaatgaagggttaagtccaaatttccttcca |
30459804 |
T |
|
| Q |
413 |
acatgttgttaacattcacacgaactccaactatatagttcacaaataacaacattaaca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
30459805 |
acatgttgttaacattcacacgaactccaactatattgttcacaaataacagcattaaca |
30459864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 104 - 465
Target Start/End: Original strand, 30447933 - 30448296
Alignment:
| Q |
104 |
ttatttgtta--cttatcccaatgaaagcaaatagggtccccatgctcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaa |
201 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||||||| | ||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30447933 |
ttatttgttagtcttattccaaggaaagcaaatagggtcccctttttccggagttctacatggtcctgattcgaatacattccaattgcaataatcacaa |
30448032 |
T |
|
| Q |
202 |
ttatctaaattgcgaacaccctgtatgtatatatcaaaatgatgaaattcacctgtccatgcaaaggaacaaaagtaaagtgtttggaacaaaatcggag |
301 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
30448033 |
ttatctagtttttcaacaccctgtacgtatatatcaaaatgatgaaattcaccggtccatgcaaaggaacagaagtatagtgtttggaaaaaaattggag |
30448132 |
T |
|
| Q |
302 |
gaaatctaggactaaatttccaactaaagctttgtccatgatgcagaaattgaactccaagatcatcctctttagatttgcaatgaagggttaagtccat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||| |||| |||| ||||||||||||||| |
|
|
| T |
30448133 |
gaaatctaggactaaatttccaactaaagctttgtccatgatgcagaagttgttttccgagatcatcatctttggattggcaacgaagggttaagtccaa |
30448232 |
T |
|
| Q |
402 |
atttccttccaacatgttgttaacattcacacgaactccaactatatagttcacaaataacaac |
465 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
30448233 |
atttccttccaacatattgttaacattcacatgaactccaactatattgttcacaaataacaac |
30448296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 25728568 - 25728631
Alignment:
| Q |
337 |
ccatgatgcagaaattgaactccaagatcatcctctttagatttgcaatgaagggttaagtcca |
400 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25728568 |
ccatgatgaagaaggtgaactccaagatcatcatctttagatttgcaatgaagggttaagtcca |
25728631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 25794201 - 25794105
Alignment:
| Q |
346 |
agaaattgaactccaagatcatcctctttagatttgcaatgaagggttaagtccatatttccttccaacatgttgttaacattcacacgaactccaa |
442 |
Q |
| |
|
|||| |||| |||||||||||| ||| ||||||||||||||||||||| |||| ||| |||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
25794201 |
agaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcacacgtactccaa |
25794105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 25183977 - 25183914
Alignment:
| Q |
337 |
ccatgatgcagaaattgaactccaagatcatcctctttagatttgcaatgaagggttaagtcca |
400 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
25183977 |
ccatgatgaagaagatgaactccaagatcatcatctttagatttgcaatgaatagttaagtcca |
25183914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 25725191 - 25725254
Alignment:
| Q |
337 |
ccatgatgcagaaattgaactccaagatcatcctctttagatttgcaatgaagggttaagtcca |
400 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
25725191 |
ccatgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaagggttaagtcca |
25725254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 25733599 - 25733662
Alignment:
| Q |
337 |
ccatgatgcagaaattgaactccaagatcatcctctttagatttgcaatgaagggttaagtcca |
400 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
25733599 |
ccatgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaagggttaagtcca |
25733662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 9591401 - 9591360
Alignment:
| Q |
357 |
tccaagatcatcctctttagatttgcaatgaagggttaagtc |
398 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
9591401 |
tccaagatcatcatctttagattgacaatgaagggttaagtc |
9591360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 38028396 - 38028317
Alignment:
| Q |
125 |
gaaagcaaatagggtccccatgctcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaatta |
204 |
Q |
| |
|
||||||| ||||| |||||||| | |||| ||||||||||||||| || |||| |||||||||||||| ||| |||||| |
|
|
| T |
38028396 |
gaaagcatataggatccccatgttgttgaattctacatggtcctgacttgaatatattccaattgcaatcatcgcaatta |
38028317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 17373910 - 17373943
Alignment:
| Q |
352 |
tgaactccaagatcatcctctttagatttgcaat |
385 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
17373910 |
tgaactccaagatcatcatctttagatttgcaat |
17373943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 38407114 - 38407063
Alignment:
| Q |
337 |
ccatgatgcagaaattgaactccaagatcatcctctttagatttgcaatgaa |
388 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38407114 |
ccattatgaagaaaatgaactccaagatcatcatctttagatttacaatgaa |
38407063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University