View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_high_4 (Length: 487)
Name: NF19494_high_4
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 68 - 473
Target Start/End: Original strand, 47741854 - 47742258
Alignment:
| Q |
68 |
gttgacaaaattaatcatcatttcattgaaattcgaacatttaaaaataagattattaagttaacttttttgggacgcttaaagtcatagctttggtagt |
167 |
Q |
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| T |
47741854 |
gttgacaaaattaatcatcatttcattgaaattcgaacatttaaaaataagattattaagttaacttttttgggacgcttaaagtcatagctttggtagt |
47741953 |
T |
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| Q |
168 |
agctggggtcttaggccgatcttggtgtttagtcaattggtatcaagttatttattattcaaaactttacgttctattttatgcatatatgtgcatggcc |
267 |
Q |
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| T |
47741954 |
agctggggtcttaggccgatcttggtgtttagtcaattggtatcaagtta-ttattattcaaaactttacgttctattttatgcatatatgtgcatggcc |
47742052 |
T |
|
| Q |
268 |
acctttgatcctagtctaaagagctagctttcacgagtcatatttaagctcatttaacataaagtttattatatgtatnnnnnnnttattgtagccaaac |
367 |
Q |
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| T |
47742053 |
acctttgatcctagtctaaagagctagctttcacgagtcatatttaagctcatttaacataaagtttattatatttataaaaaaattattatagccaaac |
47742152 |
T |
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| Q |
368 |
ttgtgaatttacaaatatatattgattttttaaaatctaatgtgtgcgaataataatatatctcactaatatttattaggtttaatagcagttttgtccc |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47742153 |
ttgtgaatttacaaatatatattgattttttaaaatctaatgtgtgcgaataataatatatctcactaatatttattaggtttaatagcagttttgtcca |
47742252 |
T |
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| Q |
468 |
cctatg |
473 |
Q |
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|||||| |
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| T |
47742253 |
cctatg |
47742258 |
T |
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