View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19494_high_8 (Length: 420)

Name: NF19494_high_8
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19494_high_8
NF19494_high_8
[»] chr6 (54 HSPs)
chr6 (18-411)||(31286624-31287018)
chr6 (111-411)||(28794550-28794851)
chr6 (112-411)||(27608838-27609138)
chr6 (111-411)||(26648623-26648924)
chr6 (111-411)||(26754591-26754892)
chr6 (111-411)||(26804657-26804958)
chr6 (116-411)||(27590701-27590998)
chr6 (116-411)||(27675298-27675595)
chr6 (112-411)||(27681126-27681426)
chr6 (116-411)||(27703935-27704232)
chr6 (114-365)||(27696355-27696607)
chr6 (114-377)||(26625414-26625678)
chr6 (114-377)||(26731391-26731655)
chr6 (114-411)||(27716218-27716516)
chr6 (111-296)||(28788429-28788615)
chr6 (113-375)||(26863751-26864014)
chr6 (113-411)||(26825966-26826265)
chr6 (130-410)||(26658139-26658420)
chr6 (130-410)||(26764110-26764391)
chr6 (149-411)||(25581886-25582149)
chr6 (112-234)||(26886248-26886370)
chr6 (149-344)||(26145032-26145228)
chr6 (130-401)||(26637716-26637988)
chr6 (130-401)||(26743682-26743954)
chr6 (113-233)||(27529172-27529292)
chr6 (149-411)||(25076030-25076293)
chr6 (149-411)||(25513054-25513317)
chr6 (149-322)||(25485226-25485400)
chr6 (190-411)||(26979630-26979852)
chr6 (18-113)||(26648504-26648600)
chr6 (18-113)||(26754472-26754568)
chr6 (190-411)||(26961331-26961553)
chr6 (257-411)||(28788673-28788827)
chr6 (137-237)||(26951944-26952044)
chr6 (125-368)||(26850824-26851068)
chr6 (130-277)||(27602575-27602723)
chr6 (315-411)||(27662934-27663030)
chr6 (149-411)||(25547147-25547410)
chr6 (149-229)||(26058086-26058166)
chr6 (149-229)||(26078056-26078136)
chr6 (17-113)||(26625294-26625389)
chr6 (17-113)||(26731271-26731366)
chr6 (18-113)||(28788309-28788406)
chr6 (18-113)||(28794430-28794527)
chr6 (113-233)||(27425493-27425613)
chr6 (18-114)||(26804538-26804635)
chr6 (18-63)||(27704310-27704355)
chr6 (60-114)||(27609164-27609218)
chr6 (60-114)||(27681046-27681100)
chr6 (354-411)||(26145382-26145439)
chr6 (354-411)||(26952162-26952219)
chr6 (366-411)||(27425314-27425359)
chr6 (17-69)||(26825886-26825938)
chr6 (367-411)||(27528993-27529037)
[»] scaffold1870 (1 HSPs)
scaffold1870 (111-411)||(957-1258)
[»] scaffold0419 (2 HSPs)
scaffold0419 (111-411)||(9676-9977)
scaffold0419 (18-78)||(9555-9615)
[»] scaffold0277 (4 HSPs)
scaffold0277 (111-411)||(2409-2710)
scaffold0277 (111-411)||(11372-11673)
scaffold0277 (18-78)||(11734-11794)
scaffold0277 (18-78)||(2771-2831)
[»] chr8 (4 HSPs)
chr8 (114-411)||(29271557-29271855)
chr8 (121-376)||(22023427-22023686)
chr8 (18-88)||(22023298-22023368)
chr8 (60-114)||(29271882-29271936)
[»] chr1 (5 HSPs)
chr1 (113-411)||(28125411-28125710)
chr1 (121-410)||(26138085-26138375)
chr1 (122-411)||(266049-266339)
chr1 (113-411)||(28130442-28130748)
chr1 (17-113)||(266371-266467)
[»] scaffold0349 (1 HSPs)
scaffold0349 (114-411)||(15429-15727)
[»] chr4 (14 HSPs)
chr4 (113-407)||(18721832-18722127)
chr4 (113-407)||(18653236-18653531)
chr4 (113-411)||(18677314-18677613)
chr4 (113-411)||(18687369-18687668)
chr4 (113-411)||(18697157-18697456)
chr4 (113-411)||(18729250-18729549)
chr4 (18-113)||(18653556-18653652)
chr4 (18-113)||(18677638-18677734)
chr4 (18-113)||(18729574-18729670)
chr4 (18-113)||(18722152-18722248)
chr4 (113-233)||(18075942-18076062)
chr4 (18-81)||(18687725-18687788)
chr4 (18-70)||(18697524-18697576)
chr4 (354-411)||(18076184-18076241)
[»] chr2 (1 HSPs)
chr2 (111-373)||(17990975-17991238)
[»] scaffold0003 (2 HSPs)
scaffold0003 (113-233)||(61750-61870)
scaffold0003 (354-411)||(61992-62049)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 54)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 31286624 - 31287018
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaaaagaaatcactaagagagtatttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31286624 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgttttcgtcaacaaaagaaatcactaagagagtatttgt 31286723  T
Q  118 ttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31286724 ttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacctgatgtctcaggtctttcaa 31286823  T
Q  218 atttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttg 316  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31286824 atatagagaagttctcatttaaattttgtagaaatttaattacaattgacgattcaattggccaccaaaataaacttgaattcataagtgcaattggttg 31286923  T
Q  317 cagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31286924 cagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgtgagtctcaatagttttccagaattat 31287018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 111 - 411
Target Start/End: Original strand, 28794550 - 28794851
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||    
T  28794550 tatttgtttcttccttgtgtttatgcagaagttccagaacatgaaagtcttgacattggacaagtgtgaatatttaacccatatacctgatgtctcaggt 28794649  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgtag-aaatttaatacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  |||||| || |||||||| |||  || |||| | ||||| | ||||||| ||||||||||||| |||| |||||||||||||    ||||||||     
T  28794650 cttcaaaatttggaaaagttctcgtttgcatattgtcgtaaattaattacaattcacaattcaattggacacctaaataaacttgaaaggttaagtgcat 28794749  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatt 409  Q
     |||||||||||||||| | ||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||| ||||    
T  28794750 atggttgcagcaagctcgaacgttttccacctttagggttggcatctcttaacgaattggatctctctttttgtgagagtctcaagaattttccaaaatt 28794849  T
Q  410 at 411  Q
    ||    
T  28794850 at 28794851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 112 - 411
Target Start/End: Complemental strand, 27609138 - 27608838
Alignment:
Q  112 atttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtc 211  Q
    ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |    
T  27609138 atttgtttcttccttgtgtgtatgcagaagtttcagaatatgaaagtcttgacattgaactattgtgaatatttaacacatatacccgatgtctcaggcc 27609039  T
Q  212 tttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaat 310  Q
    ||||||||||||| ||||| || |||| || ||||   ||||||| ||||||| ||||||| ||||| |||| ||||||||||||||   ||||||||      
T  27609038 tttcaaatttagaaaagttatcgtttacatgttgtgataatttaattacaattcacaattctattggacacctaaataaacttgaatggttaagtgcata 27608939  T
Q  311 tggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatta 410  Q
    ||||||||| |||||| | ||||||||||| ||||||||||||||||||||| ||||| | |||  |  ||||||||||||| |||||||||||||||||    
T  27608938 tggttgcagaaagctcgaacgttttccacctttaggtttggcatctcttaagaaattgaatctcagtggttgtgagagtctcgatagttttccagaatta 27608839  T
Q  411 t 411  Q
    |    
T  27608838 t 27608838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 111 - 411
Target Start/End: Original strand, 26648623 - 26648924
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||| |||||||||| |    
T  26648623 tatttgtttgttccttgtgtttatgcagaagttccagaatatgaaagtcttgacattgaactgttgtgaatatttaactcatatacctgatgtctcagat 26648722  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  ||||||||| |||||||||||||  |||||||  ||||||| |||||||||| | |||||||| |||| |||||||||||||  | ||  ||||     
T  26648723 cttcaaaatttagaaaagttctcatttatgttttgtaagaatttaattacaattgacgactcaattgggcacctaaataaacttgaaagcttagatgcag 26648822  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatt 409  Q
     | |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||  |  |||||||||||| || | ||||||||||||    
T  26648823 gttgttgcagcaagctcaagcgttttccacccttagggttgacatctcttaagcaattggaactcagtggttgtgagagtctaaagaattttccagaatt 26648922  T
Q  410 at 411  Q
    ||    
T  26648923 at 26648924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 111 - 411
Target Start/End: Original strand, 26754591 - 26754892
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||| |||||||||| |    
T  26754591 tatttgtttgttccttgtgtttatgcagaagttccagaatatgaaagtcttgacattgaactgttgtgaatatttaactcatatacctgatgtctcagat 26754690  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  ||||||||| |||||||||||||  |||||||  ||||||| |||||||||| | |||||||| |||| |||||||||||||  | ||  ||||     
T  26754691 cttcaaaatttagaaaagttctcatttatgttttgtaagaatttaattacaattgacgactcaattgggcacctaaataaacttgaaagcttagatgcag 26754790  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatt 409  Q
     | |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||  |  |||||||||||| || | ||||||||||||    
T  26754791 gttgttgcagcaagctcaagcgttttccacccttagggttgacatctcttaagcaattggaactcagtggttgtgagagtctaaagaattttccagaatt 26754890  T
Q  410 at 411  Q
    ||    
T  26754891 at 26754892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 111 - 411
Target Start/End: Original strand, 26804657 - 26804958
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||  |||||||||||| || ||||| ||| ||||||||    
T  26804657 tatttgtttcttccttgtgtttatgcagaatttccaaaatatgaaagtcttgacattggacgataatgaatatttaacccacatacctgatctctcaggt 26804756  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgt-agaaatttaatacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  ||||||||| |||||||| ||||||| |||| |||| || | ||||||||||||||| ||||| |||| |||||||||||||    ||||||||     
T  26804757 cttcaaaatttagaaaagttctcgtttaaatattgtgagaatttaattacaattgacaattcgattggacacctaaataaacttgaaaggttaagtgcat 26804856  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatt 409  Q
    ||||||||||||||||  | ||||||||||| |||||||||||||||||||| |||||| | || | || |||||| |||||||| ||||||||| ||||    
T  26804857 ttggttgcagcaagcttgaacgttttccacctttaggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaatt 26804956  T
Q  410 at 411  Q
    ||    
T  26804957 at 26804958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 116 - 411
Target Start/End: Complemental strand, 27590998 - 27590701
Alignment:
Q  116 gtttcttcctt-gtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtcttt 214  Q
    ||||||||||| ||||||| ||||||||||||| |||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  27590998 gtttcttcctttgtgtttatgcagaagttccaggatatgacaatcttgatattggaccattgtgaatatttaacacatatacccgatgtctcagggcttt 27590899  T
Q  215 caaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattgg 313  Q
    |||||||||| ||||| |||||| ||| |||||  ||||||| ||||||| ||||||| ||||| |||| |||||||||||||    |||||||| ||||    
T  27590898 caaatttagaaaagttatcatttgaatattgtaagaatttaattacaattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttgg 27590799  T
Q  314 ttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||| |||||| | || |||| |||| | |||||||| ||||||||| ||||||    
T  27590798 ttgcaggacgctcaaacgttttccacctttagggttggcatctcttaaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattat 27590701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 116 - 411
Target Start/End: Complemental strand, 27675595 - 27675298
Alignment:
Q  116 gtttcttcctt-gtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtcttt 214  Q
    ||||||||||| ||||||| ||||||||||||| |||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  27675595 gtttcttcctttgtgtttatgcagaagttccaggatatgacaatcttgatattggaccattgtgaatatttaacacatatacccgatgtctcaggccttt 27675496  T
Q  215 caaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattgg 313  Q
    |||||||||| ||||| || ||| ||| ||||   ||||||| ||||||| ||||||| ||||| |||| ||| |||||||||    |||||||| ||||    
T  27675495 caaatttagaaaagttatcgtttgaatgttgttataatttaattacaattcacaattcgattggacacctaaacaaacttgaaaggttaagtgcatttgg 27675396  T
Q  314 ttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    |||||| |||||||| ||||||||||| ||||| |||||||||||||||||| ||||  ||| || ||||  ||||||||| ||||||||||||||||    
T  27675395 ttgcagaaagctcaaacgttttccacctttagggttggcatctcttaaggaactggatatctgttgttgttcgagtctcaagagttttccagaattat 27675298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 112 - 411
Target Start/End: Original strand, 27681126 - 27681426
Alignment:
Q  112 atttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtc 211  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  27681126 atttgtttcttccttgtgtgtatgcagaagtttcagaatatgaaagtcttgacattggactattgtgaatatttaacacatatacccgatgtctcaggcc 27681225  T
Q  212 tttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaat 310  Q
    ||||||||||||| ||||| || |||| || ||||   ||||||| ||||||| ||||||| ||||| |||| ||||||||||||||   ||||||||      
T  27681226 tttcaaatttagaaaagttatcgtttacatgttgtgataatttaattacaattcacaattctattggacacctaaataaacttgaatggttaagtgcata 27681325  T
Q  311 tggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatta 410  Q
    ||||||||| |||||| | | ||||| ||| ||||| ||||||||||||||| |||||  ||||| |   |||||| ||||  ||| |||||||||||||    
T  27681326 tggttgcagaaagctcgaacattttcgacctttagggttggcatctcttaagaaattgatactctatgagtgtgagtgtcttgataattttccagaatta 27681425  T
Q  411 t 411  Q
    |    
T  27681426 t 27681426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 116 - 411
Target Start/End: Complemental strand, 27704232 - 27703935
Alignment:
Q  116 gtttcttcctt-gtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtcttt 214  Q
    ||||||||||| ||||||| ||||||||||| | |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  27704232 gtttcttcctttgtgtttatgcagaagttcccggatatgacagtcttgacattggaccattgtaaatatttaacacatatacccgatgtctcaggccttt 27704133  T
Q  215 caaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattgg 313  Q
    |||||||||| ||||| || ||| ||| ||||   ||||||| ||| ||| ||||||| |||||||||| |||||||||||||    |||||||| ||||    
T  27704132 caaatttagaaaagttatcgtttgaatattgtgataatttaattacgattcacaattcgattggccacctaaataaacttgaaaggttaagtgcatttgg 27704033  T
Q  314 ttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||||  || |||| ||||||||||| ||||| || ||||||||||| |||||| | |||  || ||||||||||||| ||||||||||||||||||    
T  27704032 ttgcagggagttcaaacgttttccacctttagggttagcatctcttaaagaattgaatctccgttattgtgagagtctcgatagttttccagaattat 27703935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 114 - 365
Target Start/End: Complemental strand, 27696607 - 27696355
Alignment:
Q  114 ttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctt 213  Q
    ||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  27696607 ttgtttctttcttgtgtttatgcagaagttccagaatatgaaaatcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaagcctt 27696508  T
Q  214 tcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattg 312  Q
    ||||||||||| ||||| || ||| ||  |||||  ||||||| ||||||| ||||||| ||||| |||| || ||||||||||    |||||| || ||    
T  27696507 tcaaatttagaaaagttatcgtttgaacattgtaagaatttaattacaattcacaattcgattggacacctaagtaaacttgaaaggttaagtgtaactg 27696408  T
Q  313 gttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaa 365  Q
    ||| ||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  27696407 gttacagaaagctcaaacattttccacctttaggtttggcatctcttaaggaa 27696355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 114 - 377
Target Start/End: Original strand, 26625414 - 26625678
Alignment:
Q  114 ttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctt 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||| ||||||| |||    
T  26625414 ttgtttcttccttgtgtttatgcagaagttccagaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctt 26625513  T
Q  214 tcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattg 312  Q
    ||||||||| | |||||  ||||||| ||||||| |||||||| |||||||||  | |||||||| |||| ||||||||||||| |  ||||||||        
T  26625514 tcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaattgatgactcaattgggcacctaaataaacttgaactagtaagtgcatcct 26625613  T
Q  313 gttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctct 377  Q
    ||||||  |||||| ||   |||||||||||| | |||| |||||||||| | ||||||||||||    
T  26625614 gttgcaaaaagctcgagaactttccacccttatggttggtatctcttaagaatttggaactctct 26625678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 114 - 377
Target Start/End: Original strand, 26731391 - 26731655
Alignment:
Q  114 ttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctt 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||| ||||||| |||    
T  26731391 ttgtttcttccttgtgtttatgcagaagttccagaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctt 26731490  T
Q  214 tcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattg 312  Q
    ||||||||| | |||||  ||||||| ||||||| |||||||| |||||||||  | |||||||| |||| ||||||||||||| |  ||||||||        
T  26731491 tcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaattgatgactcaattgggcacctaaataaacttgaactagtaagtgcatcct 26731590  T
Q  313 gttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctct 377  Q
    ||||||  |||||| ||   |||||||||||| | |||| |||||||||| | ||||||||||||    
T  26731591 gttgcaaaaagctcgagaactttccacccttatggttggtatctcttaagaatttggaactctct 26731655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 114 - 411
Target Start/End: Complemental strand, 27716516 - 27716218
Alignment:
Q  114 ttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctt 213  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||   ||| ||||||||||||||||||||||||||||||| |||    
T  27716516 ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtaaatatttaacacatatacccgatgtctcaggcctt 27716417  T
Q  214 tcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattg 312  Q
    ||||||||||| ||||| || ||| ||   |||   ||||||| ||||||| ||||||| ||||| ||||  ||||||||||||    ||||||||  ||    
T  27716416 tcaaatttagaaaagttatcgtttgaaagatgttataatttaattacaattcacaattcgattggacaccttaataaacttgaaaggttaagtgcatatg 27716317  T
Q  313 gttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||||  ||| || | | ||||||||| ||||||||||||||||||||||||||| | |||  || |||   ||||||||| ||||||||||||||||    
T  27716316 gttgcaataaggtcgaacattttccacctttaggtttggcatctcttaaggaattgaatctcagttcttgcaggagtctcaagagttttccagaattat 27716218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 28788429 - 28788615
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||    
T  28788429 tatttgtttcttccttgtgtttatgcagaatttccagaacatgaaagtcttgacattggacaagtgtgaatatttaacccatatacctgatgtctcaggt 28788528  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgtag-aaatttaatacaattgacaattcaattggccaccaaaataaacttgaa 296  Q
    |||  |||||| || |||||||| |||  || |||| | ||||| | ||||||| ||||||||||||| |||| |||||||||||||    
T  28788529 cttcaaaatttggaaaagttctcgtttgcatattgtcgtaaattaattacaattcacaattcaattggacacctaaataaacttgaa 28788615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 113 - 375
Target Start/End: Original strand, 26863751 - 26864014
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||   ||||||| ||||||| | |||    
T  26863751 tttgtttcttctttgtgtttatgcagaagttcgagaatatgaaagtcttgatattggactattgtgaatatttaacctgtatacccaatgtctccgatct 26863850  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | |||||||||| ||||| |  |||| |  ||||   ||||||| ||||||| |||| || |||||  ||| |||||||||||||  | ||| |||||      
T  26863851 tccaaatttagaaaagttgttgtttataaattgtcataatttaattacaattcacaactcgattgggtacctaaataaacttgaaaccctaattgcaaag 26863950  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactct 375  Q
      ||||||||||||| || ||||||||||||||   |||||||||||||||  |||||||||||    
T  26863951 tattgcagcaagctcgagagttttccacccttacaattggcatctcttaagatattggaactct 26864014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 411
Target Start/End: Original strand, 26825966 - 26826265
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||| ||| ||||||||| |||||||||| ||||||||||||||||  |||||||| | ||| || ||||||| || ||||||||||||||| ||||    
T  26825966 tttgttttttctttgtgtttatgcagaagttcgagaatatgaaagtcttttcattggacaagtgtcaacatttaacccacatacccgatgtctcatgtct 26826065  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | |||  ||||| || ||||||||||||   ||| | ||||||| |||||||||||  || |||||  ||| | ||||||||||| || ||| ||||       
T  26826066 tccaatattagaaaaattctcatttaaaaaatgtcgtaatttaattacaattgacatctcgattgggtacctagataaacttgaaatcttaaatgcagag 26826165  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
      ||||||||||||| || |||||||||||||| | ||| | || |||||||| ||| ||||||||   ||| |||||||||| ||||||||| ||||||    
T  26826166 aattgcagcaagctcgagagttttccacccttacggttgccctcccttaaggatttgaaactctctggctgtaagagtctcaagagttttccaaaattat 26826265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 130 - 410
Target Start/End: Original strand, 26658139 - 26658420
Alignment:
Q  130 tttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagt 229  Q
    |||| |||| ||||| | ||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||||    
T  26658139 tttatgcaggagttcaataatatgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagt 26658238  T
Q  230 tctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaa 328  Q
    ||||||||  |  ||||   ||||||| ||||||| |||||||| ||||  ||| ||||||||||||| || ||  ||||  ||||||||| ||| ||      
T  26658239 tctcatttcgaaattgtgctaatttaattacaattcacaattcagttggatacctaaataaacttgaaatcttagatgcatatggttgcagaaagatcgt 26658338  T
Q  329 gcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatta 410  Q
      |||||||||||||| |  |  | ||||||||||||||  |||||  ||  ||| |||||||||| |  ||||||||||||    
T  26658339 aagttttccacccttacggcttccctctcttaaggaatttcaactcagttggtgtaagagtctcaagaaatttccagaatta 26658420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 130 - 410
Target Start/End: Original strand, 26764110 - 26764391
Alignment:
Q  130 tttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagt 229  Q
    |||| |||| ||||| | ||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||||    
T  26764110 tttatgcaggagttcaataatatgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagt 26764209  T
Q  230 tctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaa 328  Q
    ||||||||  |  ||||   ||||||| ||||||| |||||||| ||||  ||| ||||||||||||| || ||  ||||  ||||||||| ||| ||      
T  26764210 tctcatttcgaaattgtgctaatttaattacaattcacaattcagttggatacctaaataaacttgaaatcttagatgcatatggttgcagaaagatcgt 26764309  T
Q  329 gcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatta 410  Q
      |||||||||||||| |  |  | ||||||||||||||  |||||  ||  ||| |||||||||| |  ||||||||||||    
T  26764310 aagttttccacccttacggcttccctctcttaaggaatttcaactcagttggtgtaagagtctcaagaaatttccagaatta 26764391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 149 - 411
Target Start/End: Original strand, 25581886 - 25582149
Alignment:
Q  149 atatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagttctcatttaaattttgtag 248  Q
    ||||||||||||||| ||||||  || ||  | ||||||| ||||||||||||||||| |||||| ||||| |||| |||| ||||||| ||||||||      
T  25581886 atatgaaagtcttgaaattggattatagttcagatttaacccatatacccgatgtctcgggtcttccaaatctagaaaagtgctcatttcaattttgttt 25581985  T
Q  249 aaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggt 347  Q
     | ||||| ||||||| ||| ||| ||||| |||| ||||||||||||| || ||| ||||  |||||||||||| ||  ||| ||| |||||||||       
T  25581986 tagtttaattacaattcacagttcgattggacacctaaataaacttgaaatcttaaatgcatatggttgcagcaaacttgagcatttcccacccttacag 25582085  T
Q  348 ttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
     || | ||||||||| |||| ||| |||||   |||||||||||||| | ||||||||||||||    
T  25582086 ctgccctctcttaagaaatttgaaatctctaagtgtgagagtctcaagaattttccagaattat 25582149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 26886248 - 26886370
Alignment:
Q  112 atttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtc 211  Q
    |||||||||||| ||||||||| |||||||||| |    ||||||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||||    
T  26886248 atttgtttcttctttgtgtttatgcagaagttcgacttcatgaaagtcttgacatttgacaattgtgaatatttaacccatgtacccaatgtctcaggtc 26886347  T
Q  212 tttcaaatttagagaagttctca 234  Q
    ||  ||||||||| |||||||||    
T  26886348 ttctaaatttagaaaagttctca 26886370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 149 - 344
Target Start/End: Original strand, 26145032 - 26145228
Alignment:
Q  149 atatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagttctcatttaaattttgtag 248  Q
    |||||||||||||||||||| || ||| |  ||||||||| |||||||||||||||||||||||| ||||| |||| |||| ||| ||| ||   |||      
T  26145032 atatgaaagtcttgacattgaactattctcgatatttaacccatatacccgatgtctcaggtcttccaaatctagaaaagtgctcctttcaaaactgtga 26145131  T
Q  249 aaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccaccctta 344  Q
    || ||||| || |||| ||| ||| ||||| |||| ||||||||||||| || ||| ||||  |||||||||||||||  ||| |||||||||||||    
T  26145132 aagtttaattagaattcacagttcgattggacacctaaataaacttgaaatcttaaatgcatctggttgcagcaagcttgagcattttccaccctta 26145228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 401
Target Start/End: Original strand, 26637716 - 26637988
Alignment:
Q  130 tttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagt 229  Q
    |||| |||||||||| |  |||||||||||||||||||| || ||||| | |||||||| ||||||||||||||||||||||| |||||||| || ||||    
T  26637716 tttatgcagaagttcaactatatgaaagtcttgacattgaaccattgtcactatttaactcatatacccgatgtctcaggtctatcaaattttgaaaagt 26637815  T
Q  230 tctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaa 328  Q
    |||| ||||||   |||| ||||| || ||||||| || |||| ||||| || | || ||||||| || || ||| |||||    ||||| |  |||  |    
T  26637816 tctcgtttaaaaagtgtaaaaattgaattacaattcacgattcgattgggcagctaagtaaacttaaaatcttaaatgcaaaaaattgcaactcgctaga 26637915  T
Q  329 gcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagtttt 401  Q
    | |||||||||||||| | ||| | ||||||||| || || ||||| ||| ||||  ||||||||| ||||||    
T  26637916 gagttttccacccttacggttgccctctcttaagcaagtgaaactcgcttattgtaggagtctcaagagtttt 26637988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 401
Target Start/End: Original strand, 26743682 - 26743954
Alignment:
Q  130 tttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagt 229  Q
    |||| |||||||||| |  |||||||||||||||||||| || ||||| | |||||||| ||||||||||||||||||||||| |||||||| || ||||    
T  26743682 tttatgcagaagttcaactatatgaaagtcttgacattgaaccattgtcactatttaactcatatacccgatgtctcaggtctatcaaattttgaaaagt 26743781  T
Q  230 tctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaa 328  Q
    |||| ||||||   |||| ||||| || ||||||| || |||| ||||| || | || ||||||| || || ||| |||||    ||||| |  |||  |    
T  26743782 tctcgtttaaaaagtgtaaaaattgaattacaattcacgattcgattgggcagctaagtaaacttaaaatcttaaatgcaaaaaattgcaactcgctaga 26743881  T
Q  329 gcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagtttt 401  Q
    | |||||||||||||| | ||| | ||||||||| || || ||||| ||| ||||  ||||||||| ||||||    
T  26743882 gagttttccacccttacggttgccctctcttaagcaagtgaaactcgcttattgtaggagtctcaagagtttt 26743954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 27529292 - 27529172
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| | ||||||| |||||||||  |  ||||||||||||||| |||| || |||||||||||||||| |||||||| ||||||||||| ||    
T  27529292 tttgtttcttcttcgtgtttatgcagaagtttgaagatatgaaagtcttgatattgaacaattgtgaatatttaacccatataccggatgtctcagggct 27529193  T
Q  213 ttcaaatttagagaagttctc 233  Q
    | |||||||||| ||||||||    
T  27529192 tccaaatttagaaaagttctc 27529172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 411
Target Start/End: Original strand, 25076030 - 25076293
Alignment:
Q  149 atatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagttctcatttaaattttgtag 248  Q
    ||||||||||||||| |||| || ||| | | | |||||| |||||||||||||||||||||||| |||||||||| ||| ||||||| |||   ||| |    
T  25076030 atatgaaagtcttgatattgaaccatttttactctttaactcatatacccgatgtctcaggtcttccaaatttagaaaagatctcattaaaaaagtgttg 25076129  T
Q  249 aaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggt 347  Q
     || |||| ||||||| |||||||||||||   || || |||||||||| |||||| |||||     |||   ||||||||  |||||||||||||| |     
T  25076130 gaacttaattacaattcacaattcaattggatgcctaagtaaacttgaaatcataaatgcaaggaaatgctataagctcaaaagttttccacccttacgg 25076229  T
Q  348 ttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
     || | ||||||||||||||| |||| |||   |||  ||||||||| ||||||||||||||||    
T  25076230 ctgccctctcttaaggaattgaaactttctgagtgttggagtctcaagagttttccagaattat 25076293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 411
Target Start/End: Original strand, 25513054 - 25513317
Alignment:
Q  149 atatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagttctcatttaaattttgtag 248  Q
    |||||||||||||||||||| |   ||||||||||||||| ||||||||||||||||| |||||| ||||| |||| ||||||| ||||  || ||||      
T  25513054 atatgaaagtcttgacattgaatttttgtgaatatttaacccatatacccgatgtctcgggtcttccaaatctagaaaagttcttatttcgatattgtga 25513153  T
Q  249 aaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggt 347  Q
     | ||||| ||||||| ||| ||| ||||| |||| ||||||||||||| || ||| | ||  |||||||||||| |   ||| ||| |||||||||       
T  25513154 tagtttaattacaattcacatttcgattggacacctaaataaacttgaaatcttaaatacatgtggttgcagcaaacctgagcttttcccacccttacag 25513253  T
Q  348 ttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
     || | ||||||||| |||| ||| |||||   ||| |||||||||| | ||||||||||||||    
T  25513254 ctgccctctcttaagaaatttgaaatctctgggtgtaagagtctcaagaattttccagaattat 25513317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 149 - 322
Target Start/End: Original strand, 25485226 - 25485400
Alignment:
Q  149 atatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagttctcatttaaattttgtag 248  Q
    ||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||| ||||| |||| |||| |||||||  || ||||      
T  25485226 atatgaaagtcttgacattggatttttgtgaatatttaacccatatacccgatgtctcgggtcttccaaatctagaaaagtgctcatttcgatattgttt 25485325  T
Q  249 aaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaa 322  Q
     | ||||| |||||||  || ||| ||||| |||| ||||||||||||| || ||| ||||  ||||||||||||    
T  25485326 tagtttaattacaattcccagttcgattggacacctaaataaacttgaaatcttaaatgcatatggttgcagcaa 25485400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 190 - 411
Target Start/End: Original strand, 26979630 - 26979852
Alignment:
Q  190 catatacccgatgtctcaggtctttcaaatttagagaagttctcatttaaattttgtagaaatttaat-acaattgacaattcaattggccaccaaaata 288  Q
    ||||||||| ||||||||||||| | |||||||   |||||||||||||||   ||| | |||||||| | |||||||||||| ||| |  | | |||||    
T  26979630 catatacccaatgtctcaggtctctaaaatttaataaagttctcatttaaaaaatgtcggaatttaattaaaattgacaattccatttggaagctaaata 26979729  T
Q  289 aacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagag 388  Q
    | ||||||  | ||||||  |  ||||||  ||||||| || ||||||||||||||  |||| | ||||||||||||||||||||||||   ||||| ||    
T  26979730 agcttgaacacttaagtgtgaagggttgcctcaagctcgagagttttccacccttacatttgccctctcttaaggaattggaactctctgagtgtgatag 26979829  T
Q  389 tctcaatagttttccagaattat 411  Q
    |||||| ||||||||||||||||    
T  26979830 tctcaaaagttttccagaattat 26979852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 26648504 - 26648600
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaac-aaaagaaatcactaagagagtat 113  Q
    |||||||||| |  |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||    
T  26648504 caaggcaagttatataacttcattttctaattgtatatatttataaattcacaatgattttgtttccgtcaacaaaaacaaatcactatgagagtat 26648600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 26754472 - 26754568
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaac-aaaagaaatcactaagagagtat 113  Q
    |||||||||| |  |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||    
T  26754472 caaggcaagttatataacttcattttctaattgtatatatttataaattcacaatgattttgtttccgtcaacaaaaacaaatcactatgagagtat 26754568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 411
Target Start/End: Original strand, 26961331 - 26961553
Alignment:
Q  190 catatacccgatgtctcaggtctttcaaatttagagaagttctcatttaaattttgtagaaatttaat-acaattgacaattcaattggccaccaaaata 288  Q
    ||||||||| |||||||| | |||  |||||||   |||||||||||| ||  |||| |||| ||||| | |||||||||||| ||| |  | | |||||    
T  26961331 catatacccaatgtctcaagccttcaaaatttaataaagttctcatttgaaaattgtcgaaacttaattaaaattgacaattccatttggaagctaaata 26961430  T
Q  289 aacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagag 388  Q
    | ||||||  | ||||||| |  ||||||  ||||||| || ||||||||||||||  |||| | ||||||||||||||||||||||||   ||||| ||    
T  26961431 agcttgaacacttaagtgcgaagggttgcctcaagctcgagagttttccacccttacatttgccctctcttaaggaattggaactctctaagtgtgatag 26961530  T
Q  389 tctcaatagttttccagaattat 411  Q
    |||||| ||||||||||||||||    
T  26961531 tctcaaaagttttccagaattat 26961553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 411
Target Start/End: Original strand, 28788673 - 28788827
Alignment:
Q  257 tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggtttggcatct 356  Q
    ||||||| ||||||||||||| |||| |||||||||||||    ||| |||| ||| ||||||||| ||| |  |||||||||| ||||| ||||||||     
T  28788673 tacaattcacaattcaattggacacctaaataaacttgaaaggttaaatgcatttgattgcagcaaactcgaaagttttccacctttagggttggcatcc 28788772  T
Q  357 cttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||| |||||| | ||||||  ||||| ||||||||| ||||||||| ||||||    
T  28788773 cttaatgaattgaatctctctcattgtgggagtctcaagagttttccaaaattat 28788827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 26951944 - 26952044
Alignment:
Q  137 agaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagttctcatt 236  Q
    |||||||| | || |||||| |||||||||||||| || |||| |||||||| |||||||||||||||||||||||| |||||||| | || ||||||||    
T  26951944 agaagttcaacaacatgaaaatcttgacattggacaatagtgactatttaactcatatacccgatgtctcaggtcttccaaatttaaaaaacttctcatt 26952043  T
Q  237 t 237  Q
    |    
T  26952044 t 26952044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 125 - 368
Target Start/End: Original strand, 26850824 - 26851068
Alignment:
Q  125 ttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttaga 224  Q
    ||||||||| |||||||||| | || || |||  |||||||||||||| || | |||||||||| |||||| | |||||||| || ||| ||||||||||    
T  26850824 ttgtgtttatgcagaagttcaacaacattaaaaacttgacattggacggttctaaatatttaacccatatatctgatgtctctggacttccaaatttaga 26850923  T
Q  225 gaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaag 323  Q
     ||| |||||||| | | ||||   | ||||| ||||||| |||||||||||||  |||  | |||||||||| || ||  ||||   ||||||| ||||    
T  26850924 aaagctctcatttcattgttgtcatagtttaattacaattcacaattcaattgggtacctgattaaacttgaaatcttagatgcatggggttgcaacaag 26851023  T
Q  324 ctcaagcgttttccacccttaggtttggcatctcttaaggaattg 368  Q
    ||  || ||||||||||||||   ||| | |||||||||||||||    
T  26851024 cttgagagttttccacccttacaattgccctctcttaaggaattg 26851068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 130 - 277
Target Start/End: Complemental strand, 27602723 - 27602575
Alignment:
Q  130 tttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagt 229  Q
    |||| |||||||||| |  |||||||||| |||| |||| ||  |||| |||||||||| || ||||||||||||||||| ||| |||||||||| ||||    
T  27602723 tttatgcagaagttcaactatatgaaagtattgaaattgaacagttgtcaatatttaacccaaatacccgatgtctcaggacttccaaatttagaaaagt 27602624  T
Q  230 tctcatttaaattttgt-agaaatttaatacaattgacaattcaattgg 277  Q
    | || ||| |||||||| |||| || | ||||||| |||||||| ||||    
T  27602623 tatcgtttcaattttgtgagaatttaattacaattcacaattcagttgg 27602575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 27663030 - 27662934
Alignment:
Q  315 tgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||| ||||||||| |||||||||||||| || || | ||||||||| |||||||||||  |||||||  ||||||||| ||||||||||||||||    
T  27663030 tgcaggaagctcaagagttttccacccttatgtctgccgtctcttaagaaattggaactccatttttgtaggagtctcaagagttttccagaattat 27662934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 411
Target Start/End: Original strand, 25547147 - 25547410
Alignment:
Q  149 atatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagttctcatttaaattttgtag 248  Q
    ||||||||||||||| ||||||   ||||||||||||||| |||||||| |||||||| ||||||  |||| |||| |||| ||| |||  |   |||      
T  25547147 atatgaaagtcttgatattggatctttgtgaatatttaacccatatacctgatgtctcgggtcttcgaaatctagaaaagtgctcctttcgagaatgtca 25547246  T
Q  249 aaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggt 347  Q
     | ||||| ||||||| ||| ||| ||||| |||| ||||||||||||| || ||| ||||  |||||||    ||||  ||| ||| |||||||||       
T  25547247 tagtttaattacaattcacagttcgattggacacctaaataaacttgaaatcttaaatgcatatggttgcttagagcttgagcatttcccacccttacag 25547346  T
Q  348 ttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
     || | ||||||||| |||| ||| |||||| ||||||||||||||| | ||||||||||||||    
T  25547347 ctgccctctcttaagaaatttgaaatctcttattgtgagagtctcaagaattttccagaattat 25547410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 26058086 - 26058166
Alignment:
Q  149 atatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagt 229  Q
    ||||||||||  |||||||||||| || | |||||||||| |||||||||||||||||||||||| ||||| |||| ||||    
T  26058086 atatgaaagttatgacattggacggttctcaatatttaacccatatacccgatgtctcaggtcttccaaatctagaaaagt 26058166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 26078056 - 26078136
Alignment:
Q  149 atatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatttagagaagt 229  Q
    ||||||||||  |||||||||||| || | |||||||||| |||||||||||||||||||||||| ||||| |||| ||||    
T  26078056 atatgaaagttatgacattggacggttctcaatatttaacccatatacccgatgtctcaggtcttccaaatctagaaaagt 26078136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 26625294 - 26625389
Alignment:
Q  17 acaaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaaaagaaatcactaagagagtat 113  Q
    |||||||||||||| | | |||||||| |||||||||| ||||||||| ||||||| |||||||||  |||||| |||||| |||||| ||||||||    
T  26625294 acaaggcaagtgaaatgatttcattttctaattgtatatatttataaactcacaatgattttgtttatgtcaac-aaagaagtcactatgagagtat 26625389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 26731271 - 26731366
Alignment:
Q  17 acaaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaaaagaaatcactaagagagtat 113  Q
    |||||||||||||| | | |||||||| |||||||||| ||||||||| ||||||| |||||||||  |||||| |||||| |||||| ||||||||    
T  26731271 acaaggcaagtgaaatgatttcattttctaattgtatatatttataaactcacaatgattttgtttatgtcaac-aaagaagtcactatgagagtat 26731366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 28788309 - 28788406
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaa--aagaaatcactaagagagtat 113  Q
    ||||||||||||| |||||||||||| | |||||||| |||||| |||| ||||| ||||||||| || ||||||  |||||||||||| || |||||    
T  28788309 caaggcaagtgaaataacttcattttcttattgtatatatttattaatttacaatgattttgttttcgccaacaaagaagaaatcactatgatagtat 28788406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 28794430 - 28794527
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaa--aagaaatcactaagagagtat 113  Q
    ||||||||||||| |||||||||||| | |||||||| |||||| |||| ||||| ||||||||| || ||||||  |||||||||||| || |||||    
T  28794430 caaggcaagtgaaataacttcattttcttattgtatatatttattaatttacaatgattttgttttcgccaacaaagaagaaatcactatgatagtat 28794527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 27425613 - 27425493
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    |||||||||||  |||||||| ||||||| |  ||||||||||||| |||| ||| ||| ||||| || ||||||   ||| ||||||||||||| | ||    
T  27425613 tttgtttcttctgtgtgtttatgcagaagcttgagaatatgaaagtgttgatattcgacaattgtcaagatttaatctatacacccgatgtctcatggct 27425514  T
Q  213 ttcaaatttagagaagttctc 233  Q
    | |||||||||| ||||||||    
T  27425513 tccaaatttagaaaagttctc 27425493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 26804538 - 26804635
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaac-aaaagaaatcactaagagagtatt 114  Q
    ||||||||||||| ||||||||||||||||  ||||| |||| |||||| |  || |||||||||| |||||| |||| || |||||| |||||||||    
T  26804538 caaggcaagtgaaataacttcattttataaaagtatatatttgtaaatttattatgattttgtttctgtcaacaaaaacaattcactatgagagtatt 26804635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 27704355 - 27704310
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataa 63  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||    
T  27704355 caaggcaagtgaaataacttcattttataactgtatatatttataa 27704310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 27609218 - 27609164
Alignment:
Q  60 ataaattcacaataattttgtttccgtcaacaaaagaaatcactaagagagtatt 114  Q
    |||| |||||||| |||||||||| ||||||||||||||||| || || ||||||    
T  27609218 ataacttcacaatgattttgtttcagtcaacaaaagaaatcagtatgaaagtatt 27609164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 27681046 - 27681100
Alignment:
Q  60 ataaattcacaataattttgtttccgtcaacaaaagaaatcactaagagagtatt 114  Q
    |||| |||||||| |||||||||| ||||||||||||||||| || || ||||||    
T  27681046 ataacttcacaatgattttgtttcagtcaacaaaagaaatcagtatgaaagtatt 27681100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 26145382 - 26145439
Alignment:
Q  354 tctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||||||| |||| ||| |||||  ||||||||||||||| | ||||||||||||||    
T  26145382 tctcttaagaaatttgaaatctctggttgtgagagtctcaagaattttccagaattat 26145439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 26952162 - 26952219
Alignment:
Q  354 tctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    |||||| |||||||| ||||||||   |||||||||||||| || |||||||||||||    
T  26952162 tctcttgaggaattgaaactctctgagtgtgagagtctcaagagctttccagaattat 26952219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 27425359 - 27425314
Alignment:
Q  366 ttggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||||||||||  |||| |||||||||| ||||||||||||||||    
T  27425359 ttggaactctctaattgtaagagtctcaagagttttccagaattat 27425314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 26825886 - 26825938
Alignment:
Q  17 acaaggcaagtgaagtaacttcattttataattgtatacatttataaattcac 69  Q
    |||||||||||||| ||| ||||||||  |||||| || ||||||||||||||    
T  26825886 acaaggcaagtgaaataagttcattttccaattgtgtatatttataaattcac 26825938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 27529037 - 27528993
Alignment:
Q  367 tggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    |||||||||||  |||| |||||||||| ||||||||||||||||    
T  27529037 tggaactctctaattgtaagagtctcaagagttttccagaattat 27528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 111 - 411
Target Start/End: Original strand, 957 - 1258
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||   |||||||||||||| |||||||| ||||||||||||    
T  957 tatttgtttcttccttgtgtttatgcagaagttccagaacatgaaaatcttgacattggacaggtgtgaatatttaacccatatacctgatgtctcaggt 1056  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgt-agaaatttaatacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  ||||||||| |||||||| ||| ||| |||| |||| || | ||||||| ||||||||||||| ||||  ||||||||||||    |||||||||    
T  1057 cttcaaaatttagaaaagttctcctttgaatattgtgagaatttaattacaattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaa 1156  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatt 409  Q
     |||||||||||| ||| | ||||||||||| |||||  | ||||| ||||| |||||| |  |||||| ||||||||||||||| ||||||||| ||||    
T  1157 atggttgcagcaaactcgaacgttttccacctttagggcttgcatcccttaatgaattgaatatctcttattgtgagagtctcaagagttttccaaaatt 1256  T
Q  410 at 411  Q
    ||    
T  1257 at 1258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 111 - 411
Target Start/End: Original strand, 9676 - 9977
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||   |||||||||||||| |||||||| ||||||||||||    
T  9676 tatttgtttcttccttgtgtttatgcagaagttccagaacatgaaaatcttgacattggacaggtgtgaatatttaacccatatacctgatgtctcaggt 9775  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgt-agaaatttaatacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  ||||||||| |||||||| ||| ||| |||| |||| || | ||||||| ||||||||||||| ||||  ||||||||||||    |||||||||    
T  9776 cttcaaaatttagaaaagttctcctttgaatattgtgagaatttaattacaattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaa 9875  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatt 409  Q
     |||||||||||| ||| | ||||||||||| |||||  | ||||| ||||| |||||| |  |||||| ||||||||||||||| ||||||||| ||||    
T  9876 atggttgcagcaaactcgaacgttttccacctttagggcttgcatcccttaatgaattgaatatctcttattgtgagagtctcaagagttttccaaaatt 9975  T
Q  410 at 411  Q
    ||    
T  9976 at 9977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 9555 - 9615
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataatttt 78  Q
    ||||| ||||||| |||||||||||| | |||||||| |||||| |||| ||||| |||||    
T  9555 caaggtaagtgaaataacttcattttcttattgtatatatttattaatttacaatgatttt 9615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 111 - 411
Target Start/End: Complemental strand, 2710 - 2409
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||   |||||||||||||| |||||||| ||||||||||||    
T  2710 tatttgtttcttccttgtgtttatgcagaagttccagaacatgaaaatcttgacattggacaggtgtgaatatttaacccatatacctgatgtctcaggt 2611  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgt-agaaatttaatacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  ||||||||| |||||||| ||| ||| |||| |||| || | ||||||| ||||||||||||| ||||  ||||||||||||    |||||||||    
T  2610 cttcaaaatttagaaaagttctcctttgaatattgtgagaatttaattacaattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaa 2511  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatt 409  Q
     |||||||||||| ||| | ||||||||||| |||||  | ||||| ||||| |||||| |  |||||| ||||||||||||||| ||||||||| ||||    
T  2510 atggttgcagcaaactcgaacgttttccacctttagggcttgcatcccttaatgaattgaatatctcttattgtgagagtctcaagagttttccaaaatt 2411  T
Q  410 at 411  Q
    ||    
T  2410 at 2409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 111 - 411
Target Start/End: Complemental strand, 11673 - 11372
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||    
T  11673 tatttgtttcttccttgtgtttatgcagaatttccagaacatgaaagtcttgacattggacaagtgtgaatatttaacccatatacctgatgtctcaggt 11574  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgtag-aaatttaatacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  |||||| || |||||||| |||  || |||| | ||||| | ||||||| ||||||||||||| |||| |||||||||||||    ||| ||||     
T  11573 cttcaaaatttggaaaagttctcgtttgcatattgtcgtaaattaattacaattcacaattcaattggacacctaaataaacttgaaaggttaaatgcat 11474  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatt 409  Q
    ||| ||||||||| ||| |  |||||||||| ||||| |||||||| ||||| |||||| | ||||||  ||||| ||||||||| ||||||||| ||||    
T  11473 ttgattgcagcaaactcgaaagttttccacctttagggttggcatcccttaatgaattgaatctctctcattgtgggagtctcaagagttttccaaaatt 11374  T
Q  410 at 411  Q
    ||    
T  11373 at 11372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 11794 - 11734
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataatttt 78  Q
    ||||||||||||| |||||||||||| | |||||||| |||||| |||| ||||| |||||    
T  11794 caaggcaagtgaaataacttcattttcttattgtatatatttattaatttacaatgatttt 11734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 2831 - 2771
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataatttt 78  Q
    ||||| ||||||| |||||||||||| | |||||||| |||||| |||| ||||| |||||    
T  2831 caaggtaagtgaaataacttcattttcttattgtatatatttattaatttacaatgatttt 2771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 114 - 411
Target Start/End: Complemental strand, 29271855 - 29271557
Alignment:
Q  114 ttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctt 213  Q
    ||||||||| |||||||||| ||||||||| ||| ||||||||||||||| |||||||   |||||||| ||||||||||| |||||||||||||| |||    
T  29271855 ttgtttctttcttgtgtttatgcagaagtttcaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatatccccgatgtctcaggcctt 29271756  T
Q  214 tcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattg 312  Q
    ||||||||||| ||||| || ||| ||  ||||   ||||||| ||||||| ||||||| ||||| |||| |||||||||||||    ||||||||  ||    
T  29271755 tcaaatttagaaaagttatcgtttgaaaattgtgataatttaactacaattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatatg 29271656  T
Q  313 gttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
     |||||  |||||||| | ||||||||| ||||||||||||||||||||||||||| | |||  |  ||||| ||||||| ||||||||||||||||||    
T  29271655 cttgcaaaaagctcaaacattttccacctttaggtttggcatctcttaaggaattgaatctcagtggttgtgtgagtctcgatagttttccagaattat 29271557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 121 - 376
Target Start/End: Original strand, 22023427 - 22023686
Alignment:
Q  121 ttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatt 220  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |   || ||||||||||||| ||  ||||||   |||||||||||||| ||||||    
T  22023427 ttccttgtgtttatgcagaagttccagaatatgaaagtcttgacgtcataccattgtgaatattttacctatatacgtaatgtctcaggtcttccaaatt 22023526  T
Q  221 tagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaatt---caattggccaccaaaataaacttgaattcataagtgcaattggttg 316  Q
    |||| ||||| || ||| ||  |||||  ||||||| ||||||||||||||   | ||  | ||||||| |||||||||| || | | ||||  ||||||    
T  22023527 tagaaaagttatcgtttgaaaattgtaagaatttaattacaattgacaattcgacgatcagacaccaaagtaaacttgaaatcttgaatgcagatggttg 22023626  T
Q  317 cagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctc 376  Q
    |||||| ||| ||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  22023627 cagcaatctcgagcgttttccaccattaggtttggcatcacttaagaaattggaactctc 22023686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 22023298 - 22023368
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtca 88  Q
    ||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||| ||||||||| |||||    
T  22023298 caaggcaagtgaaataacttcactttctaattgtatatatttataaattcacaatgattttgttttcgtca 22023368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 29271936 - 29271882
Alignment:
Q  60 ataaattcacaataattttgtttccgtcaacaaaagaaatcactaagagagtatt 114  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  29271936 ataacttcacaatgattttgtttccgtcaacaaaagaaatcactatgaaagtatt 29271882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 113 - 411
Target Start/End: Complemental strand, 28125710 - 28125411
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||| ||  ||||||||||||||| ||||||||||||||||||  |||    
T  28125710 tttgtttcttctttgtgtttatgcagaagttcgagaatatgaaagtcttgactttgaacttttgtgaatatttaacccatatacccgatgtctcacatct 28125611  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | |||||||||| ||||||||||||  || ||||   ||||||| ||||||| ||||||| |||||  ||| ||||||||||||| || ||  ||||       
T  28125610 tccaaatttagaaaagttctcatttgcatattgtgataatttaattacaattcacaattcgattgggtacctaaataaacttgaagtcttagatgcagaa 28125511  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||||||||||||| || ||||||| ||||||   ||| | | ||||||||||||| |||||  |   |||||||||||||| ||||||||||||||||    
T  28125510 ggttgcagcaagctcgagagttttccccccttacagttgacctgtcttaaggaattgaaactcagtgaatgtgagagtctcaagagttttccagaattat 28125411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 121 - 410
Target Start/End: Original strand, 26138085 - 26138375
Alignment:
Q  121 ttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaatt 220  Q
    |||||| ||| || |||||||||| || |||||||||| ||||  ||  |||||||| ||||||||||  || ||||||||||||||||||||  |||||    
T  26138085 ttccttttgtctatgcagaagttcgagtatatgaaagttttgagctttaacgattgtcaatatttaactgatctacccgatgtctcaggtcttcaaaatt 26138184  T
Q  221 tagagaagttctcatttaaattttgtagaaatttaat-acaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcag 319  Q
    |||| |||||||||||| ||  |||||  |||||||| |||||| |||||||||||||   || |||||||||||||  | ||| |||||  |||||||     
T  26138185 tagaaaagttctcatttgaaaattgtaacaatttaattacaattcacaattcaattgggttcctaaataaacttgaaaccttaaatgcaaagggttgcat 26138284  T
Q  320 caagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaatta 410  Q
    ||||||| || ||||||||||||||   ||| | ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||    
T  26138285 caagctcgagagttttccacccttacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaatta 26138375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 122 - 411
Target Start/End: Complemental strand, 266339 - 266049
Alignment:
Q  122 tccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctttcaaattt 221  Q
    ||||||||| || ||||||||||||| ||||||| ||||||| ||| ||| |||||||||||||||| |||||| | ||||||||||| ||| | |||||    
T  266339 tccttgtgtgtatgcagaagttccaggatatgaatgtcttgatattagaccattgtgaatatttaacccatatatctgatgtctcaggacttcctaattt 266240  T
Q  222 agagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagc 320  Q
    | | ||| |||||||||||  |||||  ||||||| ||||||| |||||||| ||||  ||| || |||||||||| || ||  |||||| ||||||||     
T  266239 aaaaaagctctcatttaaagattgtaagaatttaattacaattcacaattcagttgggtacctaattaaacttgaaatcttagatgcaatgggttgcaga 266140  T
Q  321 aagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||| ||| ||||||||||||||    || | |||||||||||| |||||||||||   |||  |||||||||||| |||||| ||||||    
T  266139 aagctaaagagttttccacccttacaactgccctctcttaaggaaatggaactctctgggtgttggagtctcaatagctttccaaaattat 266049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 113 - 411
Target Start/End: Complemental strand, 28130748 - 28130442
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||| ||   ||| ||||||||||  |||||||| ||||||||  |||    
T  28130748 tttgtttcttctttgtgtttatgcagaagttcgagaatacgaaagtcttgacattgaacttctgtaaatatttaaccaatatacccaatgtctcacatct 28130649  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaat--------acaattgacaattcaattggccaccaaaataaacttgaattcataag 304  Q
    | |||||||||| |||||||||||| ||  ||||   ||||||||        |||||| ||||||| |||||  ||| ||||||||||||| || |||     
T  28130648 tccaaatttagaaaagttctcatttgaaaattgtgataatttaattacaattcacaattcacaattctattgggtacctaaataaacttgaagtcttaaa 28130549  T
Q  305 tgcaattggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttcca 404  Q
    |||||  |||||||| |||||||||  |||||| |||||| | ||| | |||||||||||||||||||||      |||||||||||||| |  ||||||    
T  28130548 tgcaaagggttgcaggaagctcaagaattttccccccttacggttgacttctcttaaggaattggaactcagggaatgtgagagtctcaaaaaatttcca 28130449  T
Q  405 gaattat 411  Q
    |||||||    
T  28130448 gaattat 28130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 266467 - 266371
Alignment:
Q  17 acaaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaaaagaaatcactaagagagtat 113  Q
    |||||||||||||| | | |||||||| || ||||||| ||||| ||| ||||||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  266467 acaaggcaagtgaaatgatttcattttctatttgtatatatttagaaactcacaatgattttgtttacgtcaacaaaaaaaatcactatgagagtat 266371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 114 - 411
Target Start/End: Original strand, 15429 - 15727
Alignment:
Q  114 ttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtctt 213  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||   ||| ||||||||||||||||||||||||||||||| |||    
T  15429 ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtaaatatttaacacatatacccgatgtctcaggcctt 15528  T
Q  214 tcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaattg 312  Q
    ||||||||||| ||||| || ||| ||   |||   ||||||| ||||||| ||||||| ||||| ||||  ||||||||||||    ||||||||  ||    
T  15529 tcaaatttagaaaagttatcgtttgaaagatgttataatttaattacaattcacaattcgattggacaccttaataaacttgaaaggttaagtgcatatg 15628  T
Q  313 gttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    ||||||  ||| || | | ||||||||| ||||||||||||||||||||||||||| | |||  || |||   ||||||||| ||||||||||||||||    
T  15629 gttgcaataaggtcgaacattttccacctttaggtttggcatctcttaaggaattgaatctcagttcttgcaggagtctcaagagttttccagaattat 15727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 407
Target Start/End: Complemental strand, 18722127 - 18721832
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| ||||||||| ||||| |||  || ||||||||||||||||||||||| | ||| |||||||||| ||||||||| |||||||||||||    
T  18722127 tttgtttcttctttgtgtttatgcagaggtttgagcatatgaaagtcttgacattggacaagtgtcaatatttaacccatatacccaatgtctcaggtct 18722028  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | |||||||||| || ||||| |||  |||||||   ||||||| | || || || |||| |||||  ||| ||||||||||||| || ||| ||||  |    
T  18722027 tccaaatttagaaaaattctcgtttcgattttgtgataatttaattgcagttcacgattcgattgggaacctaaataaacttgaaatcttaaatgcatct 18721928  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaa 407  Q
    || |||| ||||||  || |||||||||||||| |  || | |||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  18721927 ggatgcatcaagcttgagagttttccacccttatggctgccctctcttgaggaattggacctctctttttgtgagagactcaagagttttccagaa 18721832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 407
Target Start/End: Complemental strand, 18653531 - 18653236
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| ||||||||| ||||| |||  || ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||| ||||||    
T  18653531 tttgtttcttctttgtgtttatgcagaggtttgaggatatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtcttaggtct 18653432  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | | ||||||||  | ||||| ||| |||||||||  ||||||| | ||||| || |||| |||||  ||| ||||||||||||| |||||| ||||       
T  18653431 tcctaatttagaataattctcgtttcaattttgtattaatttaattgcaattcacgattcgattgggaacctaaataaacttgaaatcataaatgcatgg 18653332  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaa 407  Q
    || ||||| |||||  || |||||||||||||| |  || | |||||||||||||||||  |||||| |||| |||| |||||  |||||||||||    
T  18653331 ggatgcaggaagcttgagagttttccacccttatggctgccctctcttaaggaattggacgtctcttattgtaagagactcaagtgttttccagaa 18653236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 411
Target Start/End: Complemental strand, 18677613 - 18677314
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| ||||||||| ||||| |||  || ||||||||||||||||||||||| |||||  ||||||||| ||||||||| |||||||||||||    
T  18677613 tttgtttcttctttgtgtttatgcagaggtttgaggatatgaaagtcttgacattggactattgtctatatttaacccatatacccaatgtctcaggtct 18677514  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | |||||||||| || ||||| |||  |||||||   ||||||| | ||||| || |||| |||||  ||| ||||||||||||| || ||| ||||       
T  18677513 tccaaatttagaaaaattctcgtttcgattttgtgataatttaattgcaattcacgattcgattgggaacctaaataaacttgaaatcttaaatgcatgg 18677414  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    |  |||| ||||||  ||  ||||||||||||| |  || | ||||| ||||||||||| |||||||||||| |||| ||||| ||||||||||||||||    
T  18677413 gcatgcaccaagcttgagaattttccacccttatggctgccctctctgaaggaattggacctctctttttgtaagagactcaagagttttccagaattat 18677314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 411
Target Start/End: Complemental strand, 18687668 - 18687369
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| ||||||||| ||||| |||  || ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||| ||||||    
T  18687668 tttgtttcttctttgtgtttatgcagaggtttgaggatatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtcttaggtct 18687569  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | ||||||||||  | ||||| ||| ||| |||||  ||||||| | ||||| || |||| ||| |  ||| ||||||||||||| |||||| ||||  |    
T  18687568 tccaaatttagaataattctcgttttaatattgtaataatttaattgcaattcacgattcgatttggaacctaaataaacttgaaatcataaatgcatgt 18687469  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    || ||||| |||||  || |||||||||||||| |  || | ||||| |||||||||||  |||||| ||||  ||| ||||| ||||||||||||||||    
T  18687468 ggatgcagtaagcttgagagttttccacccttatggctgccctctctgaaggaattggacatctcttattgtaggagactcaagagttttccagaattat 18687369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 411
Target Start/End: Complemental strand, 18697456 - 18697157
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| ||||||||| ||||| |||  || ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||    
T  18697456 tttgtttcttctttgtgtttatgcagaggtttgaggatatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtctcaggtct 18697357  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | ||||||||||  | ||||| ||| ||   ||||  ||||||| | ||||| || |||| ||| |  ||| ||||||||||||| |||||| ||||  |    
T  18697356 tccaaatttagaagaattctcgtttgaaaaatgtaacaatttaattgcaattcacgattcgattaggaacctaaataaacttgaaatcataaatgcatgt 18697257  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    || |||||||||||  || |||||||||||||| |  || | ||||| |||||||||||  |||||| ||||  ||| ||||| ||||||||||||||||    
T  18697256 ggatgcagcaagcttgagagttttccacccttatggctgccctctctgaaggaattggacatctcttattgtaggagactcaagagttttccagaattat 18697157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 411
Target Start/End: Complemental strand, 18729549 - 18729250
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    ||||||||||| || |||||| ||||| |||  || ||||||||||||||||||||||| | ||| |||||||||| ||||||||| |||||||||||||    
T  18729549 tttgtttcttctttttgtttatgcagaggtttgaggatatgaaagtcttgacattggacaagtgtcaatatttaacccatatacccaatgtctcaggtct 18729450  T
Q  213 ttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaatt 311  Q
    | |||||||||| || ||||| ||| ||| ||||   ||||||| | ||||| || |||| |||||  | | ||||||||||||| || ||| ||||       
T  18729449 tccaaatttagaaaaattctcgtttcaatattgtgacaatttaattgcaattcacgattcgattgggaagctaaataaacttgaaatcttaaatgcatgg 18729350  T
Q  312 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    || |||| ||||||  ||  ||||||||||||  |  || | ||||||||||||||||| ||| ||| |||| |||| ||||| ||||||||||||||||    
T  18729349 ggatgcatcaagcttgagaattttccacccttgcggctgccctctcttaaggaattggacctcacttattgtaagagactcaagagttttccagaattat 18729250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 18653652 - 18653556
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaaaagaa-atcactaagagagtat 113  Q
    ||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||| |||||||||| ||||| |||| || ||||||| ||||||||    
T  18653652 caaggcaagtgaaataatttcattttctaattgtatatatttataaattcacaatgattttgtttctgtcaagaaaataatatcactatgagagtat 18653556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 18677734 - 18677638
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaaaagaa-atcactaagagagtat 113  Q
    ||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||| |||||||||| ||||| |||| || ||||||| ||||||||    
T  18677734 caaggcaagtgaaataatttcattttctaattgtatatatttataaattcacaatgattttgtttctgtcaagaaaataatatcactatgagagtat 18677638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 18729670 - 18729574
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaaaagaa-atcactaagagagtat 113  Q
    ||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||| |||||||||| ||||| |||| || ||||||| ||||||||    
T  18729670 caaggcaagtgaaataatttcattttctaattgtatatatttataaattcacaatgattttgtttctgtcaagaaaataatatcactatgagagtat 18729574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 18722248 - 18722152
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtttccgtcaacaaaagaa-atcactaagagagtat 113  Q
    ||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||| |||||||||  ||||| |||| || ||||||| ||||||||    
T  18722248 caaggcaagtgaaataatttcattttctaattgtatatatttataaattcacaatgattttgtttatgtcaagaaaataatatcactatgagagtat 18722152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 18075942 - 18076062
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    |||||||||||  |||||||| ||||||| |  ||||||||||||| |||| ||| ||| ||||| || ||||||   ||| ||||||||||||| | ||    
T  18075942 tttgtttcttctgtgtgtttatgcagaagcttgagaatatgaaagtgttgatattcgacaattgtcaagatttaatctatacacccgatgtctcatggct 18076041  T
Q  213 ttcaaatttagagaagttctc 233  Q
    | |||||||||| ||||||||    
T  18076042 tccaaatttagaaaagttctc 18076062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 18687788 - 18687725
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcacaataattttgtt 81  Q
    ||||||||||||| ||| |||||||| ||| |||||| ||||||||||||||||| ||||||||    
T  18687788 caaggcaagtgaaataatttcattttctaaatgtatatatttataaattcacaatgattttgtt 18687725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 18697576 - 18697524
Alignment:
Q  18 caaggcaagtgaagtaacttcattttataattgtatacatttataaattcaca 70  Q
    ||||||||||||| ||| |||||||| |||||||||| |||||||||||||||    
T  18697576 caaggcaagtgaaataatttcattttctaattgtatatatttataaattcaca 18697524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 18076184 - 18076241
Alignment:
Q  354 tctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    |||||| || | ||||||||||||  |||| |||||||||| ||||||||||||||||    
T  18076184 tctcttcagaatttggaactctctaattgtaagagtctcaagagttttccagaattat 18076241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 111 - 373
Target Start/End: Complemental strand, 17991238 - 17990975
Alignment:
Q  111 tatttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggt 210  Q
    ||||| ||||||| |||  |||| |||||||||| ||||||||||||||||||||||  ||  |||| |||||||||   | ||||||||||||||||||    
T  17991238 tatttatttcttctttgattttatgcagaagttcgagaatatgaaagtcttgacatttaaccgttgtcaatatttaatgaaaatacccgatgtctcaggt 17991139  T
Q  211 ctttcaaatttagagaagttctcatttaaattttgtagaaatttaa-tacaattgacaattcaattggccaccaaaataaacttgaattcataagtgcaa 309  Q
    |||  ||  ||| |  ||||||||||| ||   ||||  ||||||| ||||||| || |||| |||||  ||| ||||||||||||| || ||| ||||     
T  17991138 cttcaaagcttaaaagagttctcatttgaagagtgtaataatttaattacaattcacgattcgattgggtacctaaataaacttgaaatcttaaatgcac 17991039  T
Q  310 ttggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaact 373  Q
      ||||| ||||||||| || ||||||| ||||||   ||||||||||||||| ||||||||||    
T  17991038 agggttgtagcaagctcgagagttttcctcccttacagttggcatctcttaagaaattggaact 17990975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 61750 - 61870
Alignment:
Q  113 tttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaggtct 212  Q
    |||||||||||  |||||||| ||||||| |  ||||||||||||| |||| ||| ||| ||||| || ||||||   ||| ||||||||||||| | ||    
T  61750 tttgtttcttctgtgtgtttatgcagaagcttgagaatatgaaagtgttgatattcgacaattgtcaagatttaatctatacacccgatgtctcatggct 61849  T
Q  213 ttcaaatttagagaagttctc 233  Q
    | |||||||||| ||||||||    
T  61850 tccaaatttagaaaagttctc 61870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 61992 - 62049
Alignment:
Q  354 tctcttaaggaattggaactctctttttgtgagagtctcaatagttttccagaattat 411  Q
    |||||| || | ||||||||||||  |||| |||||||||| ||||||||||||||||    
T  61992 tctcttcagaatttggaactctctaattgtaagagtctcaagagttttccagaattat 62049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University