View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_high_9 (Length: 415)
Name: NF19494_high_9
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 6520733 - 6521118
Alignment:
| Q |
1 |
atctaacgattgtttaggttcggaaatttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6520733 |
atctaacgattgtttaggttcggaaatttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgat |
6520832 |
T |
|
| Q |
101 |
tggggaagaaagcataagcctcaagcttatgcactcatggaagatttcatgaacttgagcacaagtttgaattcgaattacacgcgcttgcgttgttttg |
200 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| | | ||||||| |
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| T |
6520833 |
tggggaagaaagtataagcctcaagcttatgcactcatggaagatttcatgaactccagcacttgtttgaatccgaattacacgcgcctaagatgttttg |
6520932 |
T |
|
| Q |
201 |
atctttataaactccattcttgggctggtggattagctgagtttgaaaatggaagatatcagaaaggtagcagtgaagctattaatgcatattactcagc |
300 |
Q |
| |
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||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||| || || |
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| T |
6520933 |
atctttacaagctccattcttgggctggaggattagctgagtatgaaaatggaagatatcaaaagggtagtagtgaagctattaatgcatattattctgc |
6521032 |
T |
|
| Q |
301 |
cacattgctaggtttagcatatggtgatgccaatgttgttgctactggatcaaccctaacagcattggaaattcaagcatctaaaa |
386 |
Q |
| |
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|| ||||| || ||||||||||||||||||||||||||||||| | | ||||||||||| || || ||||||||||||||||||| |
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| T |
6521033 |
taccttgcttggcttagcatatggtgatgccaatgttgttgctatttggtcaaccctaactgctttcgaaattcaagcatctaaaa |
6521118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 6473227 - 6473427
Alignment:
| Q |
25 |
aatttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgattgggg-aagaaagcataagcctca |
123 |
Q |
| |
|
||||||||||| ||| | | |||||||||| || || || ||||| ||||| || |||||||| ||||||| | |||||| |||||| |||||||||| |
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| T |
6473227 |
aatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggggtaagaaat-ataagcctca |
6473325 |
T |
|
| Q |
124 |
agcttatgcactcatggaagatttcatgaacttgagcacaagtttgaattcgaattacacgcgcttgcgttgttttgatctttataaactccattcttgg |
223 |
Q |
| |
|
||| |||||||||||||||||||| |||| |||||||| || | |||||| ||||| || | || | |||||||||||||| ||||| ||||||||| |
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| T |
6473326 |
agcctatgcactcatggaagattttatgaccttgagcaaaaactcgaattcaaattatactcctttaaggtgttttgatctttacaaactgcattcttgg |
6473425 |
T |
|
| Q |
224 |
gc |
225 |
Q |
| |
|
|| |
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|
| T |
6473426 |
gc |
6473427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 6457366 - 6457236
Alignment:
| Q |
26 |
atttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaagcataagcctcaag |
125 |
Q |
| |
|
|||||||||| ||| | | ||||||||||||| || || ||||| ||||| || ||||| || ||||||| | ||||||||||||| |||| ||||||| |
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|
| T |
6457366 |
atttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaaagtataaacctcaag |
6457267 |
T |
|
| Q |
126 |
cttatgcactcatggaagatttcatgaactt |
156 |
Q |
| |
|
||||| ||||||||| ||||||| ||||||| |
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|
| T |
6457266 |
cttattcactcatggcagatttcctgaactt |
6457236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 261
Target Start/End: Complemental strand, 6465325 - 6465091
Alignment:
| Q |
27 |
tttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaagcataagcctcaagc |
126 |
Q |
| |
|
||||||||| ||| | | ||||||||||||| || || ||||| |||||||| ||||| || ||||||| |||||| || ||| ||||||||||||| |
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|
| T |
6465325 |
tttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataagcctcaagc |
6465226 |
T |
|
| Q |
127 |
ttatgcactcatggaagatttcatgaacttgagcacaagtttgaattcgaattacacgcgcttgcgttgttttgatctttataaactccattcttgggct |
226 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||| || | ||| ||||||||||| || | | ||||| ||||||| |||| | ||||| ||||| |
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|
| T |
6465225 |
ttattcactcatggctgattttatgaacttgagcagaaatccgaactcgaattacacccgtctaaggtgtttcgatctttttaaattgcattcgtgggcc |
6465126 |
T |
|
| Q |
227 |
ggtggattagctgagtttgaaaatggaagatatca |
261 |
Q |
| |
|
|| || ||| ||||||| | | |||||||| |||| |
|
|
| T |
6465125 |
ggagggttaactgagttcggagatggaagaaatca |
6465091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 6523358 - 6523248
Alignment:
| Q |
53 |
ggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaagcataagcctcaagcttatgcactcatggaagatttcatga |
152 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||| ||||||| ||| |||||| ||||| |||| |||||||||||||||| |||| |
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|
| T |
6523358 |
ggatatttcctttatggtatttctgttcttgtaatgattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatga |
6523259 |
T |
|
| Q |
153 |
acttgagcaca |
163 |
Q |
| |
|
||||||||||| |
|
|
| T |
6523258 |
acttgagcaca |
6523248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 6528159 - 6528006
Alignment:
| Q |
53 |
ggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaagcataagcctcaagcttatgcactcatggaagatttcatga |
152 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||| ||||||| | |||||| || ||| ||||| ||||||| ||| || | |||||||||| |||| |
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|
| T |
6528159 |
ggatattttgtttatgcaattgctgtgcttgctaagattgatccagcttggggtaggaagtataaggctcaagcatattcattattggaagattttatga |
6528060 |
T |
|
| Q |
153 |
acttgagcacaagtttgaattcgaattacacgcgcttgcgttgttttgatcttt |
206 |
Q |
| |
|
| |||||||| |||||||| || ||||| |||| || | ||||||||||||| |
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|
| T |
6528059 |
atttgagcacgagtttgaactcaaattatgcgcgttttaggtgttttgatcttt |
6528006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 9665479 - 9665864
Alignment:
| Q |
12 |
gtttaggttcggaaatttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaa |
111 |
Q |
| |
|
|||| ||||| ||| |||||||||| || ||| ||||||| ||||||||||||||||| ||||||||| | | ||| || |||||||||||||| ||||| |
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|
| T |
9665479 |
gttttggttctgaattttataatgcccaacttcatcatttgggatatttcctttatgggattgctgttatggttaagctcgatcccgattggggtagaaa |
9665578 |
T |
|
| Q |
112 |
gcataagcctcaagcttatgcactcatggaagatttcatgaacttgagcacaagtttgaattcgaattacacgcgcttgcgttgttttgatctttataaa |
211 |
Q |
| |
|
| ||||||||||||| ||| |||| |||||||||||| ||||||| |||||| ||| || | ||||||||||| ||||| |||||||||||||| || |
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|
| T |
9665579 |
gtataagcctcaagcctattcacttatggaagatttcgtgaacttaagcacatgttcaaaccctaattacacgcgtttgcggtgttttgatctttacaag |
9665678 |
T |
|
| Q |
212 |
ctccattcttgggctggtggattagctgagtttgaaaatggaagatatcagaaaggtagcagtgaagctattaatgcatattactcagccacattgctag |
311 |
Q |
| |
|
|| ||||| ||||| || |||||| |||||| | | ||||||||||||||||| | |||||||||||||||||||| || |||| |||||| | | |
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|
| T |
9665679 |
ctgcattcatgggcaggaggattaaaagagtttccagaaggaagatatcagaaaggaacgagtgaagctattaatgcatactatgcagctacattgatcg |
9665778 |
T |
|
| Q |
312 |
gtttagcatatggtgatgccaatgttgttgctactggatcaaccctaacagcattggaaattcaagcatctaaaacttggtggcat |
397 |
Q |
| |
|
||||||| ||||||||||||||||||||| | | ||||||||| || || |||||||||||||| || ||| |||||||||| |
|
|
| T |
9665779 |
gtttagcttatggtgatgccaatgttgtttcaattggatcaacactttttgctttggaaattcaagctgctcaaaattggtggcat |
9665864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 3754012 - 3754144
Alignment:
| Q |
25 |
aatttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaagcataagcctcaa |
124 |
Q |
| |
|
||||||||||| ||| | | |||||||||| ||||| |||||||| |||||||||||||| || ||||||| ||||||| |||| |||| || ||| |
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|
| T |
3754012 |
aatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttggggacaaaagtataaaccacaa |
3754111 |
T |
|
| Q |
125 |
gcttatgcactcatggaagatttcatgaacttg |
157 |
Q |
| |
|
|||||| |||| || ||||||| ||||||||| |
|
|
| T |
3754112 |
gcttattcacttttgcaagattttatgaacttg |
3754144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 13536503 - 13536888
Alignment:
| Q |
12 |
gtttaggttcggaaatttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaa |
111 |
Q |
| |
|
|||| ||||| ||| |||||||||| || ||| ||||||| ||||||||||||||||| ||||||||| | | ||| || |||||||||||||| ||||| |
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|
| T |
13536503 |
gttttggttctgaattttataatgcccaacttcatcatttgggatatttcctttatgggattgctgttatggttaagctcgatcccgattggggtagaaa |
13536602 |
T |
|
| Q |
112 |
gcataagcctcaagcttatgcactcatggaagatttcatgaacttgagcacaagtttgaattcgaattacacgcgcttgcgttgttttgatctttataaa |
211 |
Q |
| |
|
| ||||||||||||| ||| |||| |||||||||||| ||||||| |||||| ||| || | ||||||||||| ||||| |||||||||||||| || |
|
|
| T |
13536603 |
gtataagcctcaagcctattcacttatggaagatttcgtgaacttaagcacatgttcaaaccctaattacacgcgtttgcggtgttttgatctttacaag |
13536702 |
T |
|
| Q |
212 |
ctccattcttgggctggtggattagctgagtttgaaaatggaagatatcagaaaggtagcagtgaagctattaatgcatattactcagccacattgctag |
311 |
Q |
| |
|
|| ||||| ||||| || |||||| |||||| | | ||||||||||||||||| | |||||||||||||||||||| || |||| |||||| | | |
|
|
| T |
13536703 |
ctgcattcatgggcaggaggattaaaagagtttccagaaggaagatatcagaaaggaacgagtgaagctattaatgcatactatgcagctacattgatcg |
13536802 |
T |
|
| Q |
312 |
gtttagcatatggtgatgccaatgttgttgctactggatcaaccctaacagcattggaaattcaagcatctaaaacttggtggcat |
397 |
Q |
| |
|
||||||| ||||||||||||||||||||| | | ||||||||| || || |||||||||||||| || ||| |||||||||| |
|
|
| T |
13536803 |
gtttagcttatggtgatgccaatgttgtttcaattggatcaacactttttgctttggaaattcaagctgctcaaaattggtggcat |
13536888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 363
Target Start/End: Original strand, 35231717 - 35231955
Alignment:
| Q |
125 |
gcttatgcactcatggaagatttcatgaacttgagcacaagtttgaattcgaattacacgcgcttgcgttgttttgatctttataaactccattcttggg |
224 |
Q |
| |
|
|||||| |||| ||| |||| || ||||||||||||||| ||| ||| ||||||| || | || | ||||| ||||| ||||| | || ||||||| |
|
|
| T |
35231717 |
gcttattcacttatgcaagagtttatgaacttgagcacatgttcgaacccgaattatacacatttaaggtgtttcgatctatataagtttcactcttggg |
35231816 |
T |
|
| Q |
225 |
ctggtggattagctgagtttgaaaatggaagatatcagaaaggtagcagtgaagctattaatgcatattactcagccacattgctaggtttagcatatgg |
324 |
Q |
| |
|
|||| || ||| || |||||||| |||||||||||||| || | ||||||||| ||| |||||| || || || ||| ||||||||| |||||| |
|
|
| T |
35231817 |
ctggagggttaaaagaatttgaaaagggaagatatcagaagggaactagtgaagctgttattgcatactattctgctcgcttgataggtttagaatatgg |
35231916 |
T |
|
| Q |
325 |
tgatgccaatgttgttgctactggatcaaccctaacagc |
363 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
35231917 |
tgatgccaatgttgttactactggaccaaccttaacagc |
35231955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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