View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19494_low_11 (Length: 374)

Name: NF19494_low_11
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19494_low_11
NF19494_low_11
[»] chr2 (3 HSPs)
chr2 (1-356)||(7240510-7240865)
chr2 (112-145)||(9556247-9556280)
chr2 (112-145)||(10884550-10884583)
[»] chr6 (2 HSPs)
chr6 (113-157)||(20370880-20370924)
chr6 (113-153)||(20351149-20351189)
[»] chr8 (6 HSPs)
chr8 (113-164)||(1433538-1433589)
chr8 (113-152)||(27028833-27028872)
chr8 (111-152)||(25097388-25097429)
chr8 (112-145)||(26473781-26473814)
chr8 (113-145)||(10075580-10075612)
chr8 (112-152)||(25097394-25097434)
[»] chr7 (3 HSPs)
chr7 (117-159)||(27548258-27548300)
chr7 (113-150)||(529379-529416)
chr7 (113-153)||(48917375-48917415)
[»] chr3 (2 HSPs)
chr3 (115-161)||(25964436-25964482)
chr3 (113-145)||(16790407-16790439)
[»] chr4 (1 HSPs)
chr4 (113-158)||(1706618-1706663)
[»] chr1 (1 HSPs)
chr1 (112-145)||(25479589-25479622)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 7240510 - 7240865
Alignment:
Q  1 tgaatcgacttattttagcatatttatggacataagctcttgaaagaccatttgatagagcctatgaaattgtgaagagcttctaaaatgtccataggcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240510 tgaatcgacttattttagcatatctatggacataagctcttgaaagaccatttgatagagcctatgaaattgtgaagagcttctaaaatgtccataggcc 7240609  T
Q  101 attttcatagagttttcataagctatcctagatagcttatgaaaacagcttaaagcttacataactttacgaatctcacatgcttgaacttggttgataa 200  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7240610 attttcagatagttttcataagctatcctagatagcttatgaaaacagcttaaagcttacataactttacgaatctcacatgcttggacttggttgataa 7240709  T
Q  201 aacttgtaattgtttaattaataaaaattgaaaataacacttactgttggagctgctgctgtaactccctttaactggttgaagcattctgatccactgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240710 aacttgtaattgtttaattaataaaaattgaaaataacacttactgttggagctgctgctgtaactccctttaactggttgaagcattctgatccactgt 7240809  T
Q  301 agttgcataaatttcttagaattctagcggcactgacacgaatcagcggtactttc 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7240810 agttgcataaatttcttagaattctagcggcactgacacgaatcagtggtactttc 7240865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 9556247 - 9556280
Alignment:
Q  112 gttttcataagctatcctagatagcttatgaaaa 145  Q
    ||||||||||||||||||||| ||||||||||||    
T  9556247 gttttcataagctatcctagaaagcttatgaaaa 9556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 10884583 - 10884550
Alignment:
Q  112 gttttcataagctatcctagatagcttatgaaaa 145  Q
    ||||||||||||||||||||| ||||||||||||    
T  10884583 gttttcataagctatcctagagagcttatgaaaa 10884550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 20370924 - 20370880
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaacagcttaaagct 157  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||    
T  20370924 ttttcataagcactcctagatagcatatgaaaacagcttaaagct 20370880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 20351189 - 20351149
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaacagcttaa 153  Q
    |||| ||||||||||| |||||||||||||||||| |||||    
T  20351189 tttttataagctatccgagatagcttatgaaaacatcttaa 20351149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 1433589 - 1433538
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaacagcttaaagcttacataa 164  Q
    |||||||||||| |||  |||||||||||||||| |||||||||||| ||||    
T  1433589 ttttcataagctctccaggatagcttatgaaaactgcttaaagcttaaataa 1433538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 27028872 - 27028833
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaacagctta 152  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  27028872 ttttcataagctctccaagatagcttatgaaaacagctta 27028833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 25097429 - 25097388
Alignment:
Q  111 agttttcataagctatcctagatagcttatgaaaacagctta 152  Q
    |||||||||||||| |||  ||||||||||||||||||||||    
T  25097429 agttttcataagctctccaggatagcttatgaaaacagctta 25097388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 26473814 - 26473781
Alignment:
Q  112 gttttcataagctatcctagatagcttatgaaaa 145  Q
    ||||||||||||||||||||| ||||||||||||    
T  26473814 gttttcataagctatcctagagagcttatgaaaa 26473781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 10075612 - 10075580
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaa 145  Q
    |||||||||||||||||||| ||||||||||||    
T  10075612 ttttcataagctatcctagagagcttatgaaaa 10075580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 25097394 - 25097434
Alignment:
Q  112 gttttcataagctatcctagatagcttatgaaaacagctta 152  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  25097394 gttttcataagctatcctggagagcttatgaaaactgctta 25097434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 27548300 - 27548258
Alignment:
Q  117 cataagctatcctagatagcttatgaaaacagcttaaagctta 159  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||    
T  27548300 cataagttatccaagatagcttatgaaaacagcttatagctta 27548258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 529416 - 529379
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaacagct 150  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  529416 ttttcataagctctccaagatagcttatgaaaacagct 529379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 48917375 - 48917415
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaacagcttaa 153  Q
    |||||||||||| ||| |||||||||||||||||| |||||    
T  48917375 ttttcataagctctccaagatagcttatgaaaacaacttaa 48917415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 25964482 - 25964436
Alignment:
Q  115 ttcataagctatcctagatagcttatgaaaacagcttaaagcttaca 161  Q
    |||||||||| |||  |||||||||||||||||||||| ||||||||    
T  25964482 ttcataagctttccgggatagcttatgaaaacagcttatagcttaca 25964436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 16790407 - 16790439
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaa 145  Q
    |||||||||||||||| ||||||||||||||||    
T  16790407 ttttcataagctatccaagatagcttatgaaaa 16790439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 1706663 - 1706618
Alignment:
Q  113 ttttcataagctatcctagatagcttatgaaaacagcttaaagctt 158  Q
    |||||||||||| ||| |||||| |||||||||||||||| |||||    
T  1706663 ttttcataagctgtccaagatagtttatgaaaacagcttatagctt 1706618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 25479589 - 25479622
Alignment:
Q  112 gttttcataagctatcctagatagcttatgaaaa 145  Q
    ||||||||||||||||||||| ||||||||||||    
T  25479589 gttttcataagctatcctagagagcttatgaaaa 25479622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University