View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_13 (Length: 367)
Name: NF19494_low_13
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_13 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 7156190 - 7156549
Alignment:
| Q |
19 |
gaacaatttagcccaagaatcttcatttcgatactccttcataagcca-----------aagtatcaccatgacaaagtatgcacaaacaatccatcatc |
107 |
Q |
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| T |
7156190 |
gaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatctgccaaagtatcaccatgacaaagtatgcacaaacaatccatcatc |
7156289 |
T |
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| Q |
108 |
acatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatgcttcgtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7156290 |
acatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatgcttcgtg |
7156389 |
T |
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| Q |
208 |
tataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatgggtttgaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7156390 |
tataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatgggtttgaat |
7156489 |
T |
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| Q |
308 |
ccttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctatt |
367 |
Q |
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| T |
7156490 |
ccttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctatt |
7156549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 7174503 - 7174561
Alignment:
| Q |
140 |
tccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa |
198 |
Q |
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| T |
7174503 |
tccataatcaggctgcaatatctctccataagactcattctccaaatgaagagaaacaa |
7174561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
| Q |
19 |
gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
68 |
Q |
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| T |
7160752 |
gaacaatttagtccaagaatcattatttccatactccttcataagccaaa |
7160801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 6538887 - 6538843
Alignment:
| Q |
19 |
gaacaatttagcccaagaatcttcatttcgatactccttcataag |
63 |
Q |
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| T |
6538887 |
gaacaatttagtccaagaatctttatttccatactccttcataag |
6538843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 7160901 - 7160946
Alignment:
| Q |
154 |
gcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaat |
199 |
Q |
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|||||| ||||||| |||||||| |||||||||||| ||||||||| |
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| T |
7160901 |
gcaatagctctcgataagactccttctccaaatcaagagaaacaat |
7160946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
| Q |
19 |
gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
68 |
Q |
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||||||||||| ||||||||| | ||||| ||| |||||||||||||||| |
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| T |
7168688 |
gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa |
7168737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7199976 - 7200025
Alignment:
| Q |
19 |
gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
68 |
Q |
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||||||| |||||||||||| |||||||| | |||||||||||| ||||| |
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| T |
7199976 |
gaacaatctagcccaagaattttcatttccaaactccttcataacccaaa |
7200025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 9825635 - 9825696
Alignment:
| Q |
139 |
ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg |
200 |
Q |
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||||||||||||||||||| |||||| || | ||||| ||| ||||||||| |||||||||| |
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| T |
9825635 |
ctccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg |
9825696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 9819955 - 9820016
Alignment:
| Q |
139 |
ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg |
200 |
Q |
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| T |
9819955 |
ctccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg |
9820016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 2442092 - 2442043
Alignment:
| Q |
19 |
gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
68 |
Q |
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|
||||||||||| ||||||||||| ||||| |||||||||||||| ||||| |
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| T |
2442092 |
gaacaatttagtccaagaatctttatttccatactccttcataatccaaa |
2442043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4142132 - 4142181
Alignment:
| Q |
19 |
gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
68 |
Q |
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||||||||||| |||||| |||| ||||| ||| |||||||||||||||| |
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| T |
4142132 |
gaacaatttagtccaagactctttatttccatattccttcataagccaaa |
4142181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4157942 - 4157991
Alignment:
| Q |
19 |
gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
68 |
Q |
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||||||||||| |||||| |||| ||||| ||| |||||||||||||||| |
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| T |
4157942 |
gaacaatttagtccaagactctttatttccatattccttcataagccaaa |
4157991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
| Q |
20 |
aacaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
68 |
Q |
| |
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|||||||||| |||||| |||| ||||| |||||||||||||| ||||| |
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| T |
11081865 |
aacaatttagtccaagactctttatttccatactccttcataacccaaa |
11081817 |
T |
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