View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_14 (Length: 358)
Name: NF19494_low_14
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 28601173 - 28601511
Alignment:
| Q |
1 |
agcacatatcccagaagagttacaaacaacgttgtttgtgtccttcaaggatgcagtattattcacctttttcctaatagttgcaacactgaatgtattt |
100 |
Q |
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| T |
28601173 |
agcacatatcccagaagagttacaaacaacgttgtttgtgtccttcaaggatgcagtattattcacctttttcctaatagttgcaacactgaatgtattt |
28601272 |
T |
|
| Q |
101 |
aagtgtgtgcatccttataccagaatgtattggctctttgctttcaaaataaataatctctaactaggagtgcttctaagtgcattaattaattcatgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601273 |
aagtgtgtgcatccttataccagaatgtattggctgtttgctttcaaaataaataatctctaactaggagtgcttctaagtgcattaattaattcatgtt |
28601372 |
T |
|
| Q |
201 |
ttccttactccgtttcatgatatccatggcttatttatcatgtctccatagtaagattactaacactgaagaacagagttatcaaattcaggctccacca |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601373 |
ttccttactccgtttgatgatatccatggcttatttatcatgtctccatagtaagattactaacactgaagaacagagttatcaaattcaggctccacca |
28601472 |
T |
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| Q |
301 |
actaagtattctcaaacttaaattgataacgatcgaggt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
28601473 |
actaagtattctcaaacttaaattgataacgatcgaggt |
28601511 |
T |
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