View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_15 (Length: 331)
Name: NF19494_low_15
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 16990426 - 16990134
Alignment:
| Q |
21 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgtaattcaaaatcacacctctcacaaaaacatccaact |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
16990426 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaatccaaaatcacacctctcacaaaaacatccaact |
16990327 |
T |
|
| Q |
121 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacacatcatataaatcgaaacaagtaataattaaaattaagtttttgttttggtt |
220 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16990326 |
ttcttcttcaccaaatctattcacaagtaataaaattgcagatttacccatcatatcaatcgaaacaagtaataattaaaattaagtttttgttttggtt |
16990227 |
T |
|
| Q |
221 |
gatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaagtactctttgtttttcaatcaaattgtgggtggctagatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16990226 |
tatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaaatactctttgtttttcaatcaaattgtgggtggctagatg |
16990134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 2320042 - 2319751
Alignment:
| Q |
21 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgtaattcaaaatcacacctctcacaaaaacatccaact |
120 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| |
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| T |
2320042 |
ataattgaaacctctttaagtgtgtgaaacaaagcatgacttaccttcatttctcttccgcagcaattcaaaatcacacctctcacaaaaacatccaact |
2319943 |
T |
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| Q |
121 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacacatcatataaatcgaaacaagtaataattaaaattaagtttttgttttggtt |
220 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2319942 |
ttcttcttcaccaaatctactcacaggtaataaaatcgcagatttacacatcatatcaatcgaaacaagtaataattaaaattaagtttttgttttggtt |
2319843 |
T |
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| Q |
221 |
gatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaagtactctttgtttttcaatcaaattgtgggtggctagatg |
313 |
Q |
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| T |
2319842 |
tatggtgaaatttagagaattgtaatggaacacagt-cctcacaaagcttcaagtactctttgtttttcaatcaaattgtgggtggctagatg |
2319751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 37242174 - 37242338
Alignment:
| Q |
21 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgtaattcaaaatcacacctctcacaaaaacatccaact |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37242174 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
37242273 |
T |
|
| Q |
121 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacacatcatataaatcgaaa |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
37242274 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
37242338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 1258886 - 1259050
Alignment:
| Q |
21 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgtaattcaaaatcacacctctcacaaaaacatccaact |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1258886 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
1258985 |
T |
|
| Q |
121 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacacatcatataaatcgaaa |
185 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
1258986 |
tttttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
1259050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 34873526 - 34873367
Alignment:
| Q |
21 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgtaattcaaaatcacacctctcacaaaaacatccaact |
120 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34873526 |
ataattgaaacct-tttaagtgggtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
34873428 |
T |
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| Q |
121 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacacatcatataaatc |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
34873427 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatc |
34873367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 54712943 - 54712861
Alignment:
| Q |
213 |
ttttggttgatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaagtactctttgtttttcaatcaa |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | |||| ||||||| ||||| |||| || ||||| |||||||||||| |
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| T |
54712943 |
ttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctcataaagcctcaaatattctttatttttcaatcaa |
54712861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 31234337 - 31234501
Alignment:
| Q |
21 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgtaattcaaaatcacacctctcacaaaaacatccaact |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31234337 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactacaattcaaaatcacacctctcacaaaaacatccaact |
31234436 |
T |
|
| Q |
121 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacacatcatataaatcgaaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
31234437 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
31234501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 41664735 - 41664646
Alignment:
| Q |
207 |
tttttgttttggttgatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaagtactctttgtttttcaatcaaa |
296 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||| | |||| |||||| ||||| |||| | ||||| ||||||||||||| |
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| T |
41664735 |
ttttttttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctcttaaagcctcaaattttctttatttttcaatcaaa |
41664646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 32972224 - 32972279
Alignment:
| Q |
207 |
tttttgttttggttgatggtgaaatttagagaattgtaatggaacacagtccctca |
262 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||| | |||| ||||||| |
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| T |
32972224 |
ttttttttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctca |
32972279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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