View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19494_low_16 (Length: 328)
Name: NF19494_low_16
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 35608602 - 35608300
Alignment:
| Q |
10 |
gcatagggctaatgagagtggtggacggtggtttctgagatactgacagaatgtgttccagtctcttctcttttggttttcataacggcttgaagttgga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35608602 |
gcatagggctaatgagagtggtggacggtggtttctgagatactgacagaatgtgttccagtctcttctcttttggttttcataacggcttgaagttgga |
35608503 |
T |
|
| Q |
110 |
gttgatgttgaacttccacttccagtgctattgttggtcattgaagatccacttgttggactctctacactttggtttgttgatcctgatgaaaccaaat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35608502 |
gttgatgttgaacttccacttccagtgctattgttggtcattgaagatccacttgttggactctctacactctggtttgttgatcctgatgaaaccaaat |
35608403 |
T |
|
| Q |
210 |
ccatggtgaagaaagatttttctgttctcttctttctctttttatttatctataaacccttgttgctttggatctggttttagatctttctaagagtaag |
309 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35608402 |
ccatggtgaagaaatatttttctgttctcttctttctctttttatttatctataaacccttgttgctttggatctggttttagatctttctaagagtaag |
35608303 |
T |
|
| Q |
310 |
ata |
312 |
Q |
| |
|
||| |
|
|
| T |
35608302 |
ata |
35608300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 9914938 - 9914841
Alignment:
| Q |
149 |
attgaagatccacttgttggactctctacactttggtttgttgatcctgatgaaaccaaatccatggtgaagaaagatttttctgttctcttctttct |
246 |
Q |
| |
|
|||||| | ||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
9914938 |
attgaaaacccacttgttgggttctctactctctggtttgttgatcttgatgaaaccaaatccatggagaaaaaagatttttctgtttccttctttct |
9914841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 27542876 - 27542973
Alignment:
| Q |
149 |
attgaagatccacttgttggactctctacactttggtttgttgatcctgatgaaaccaaatccatggtgaagaaagatttttctgttctcttctttct |
246 |
Q |
| |
|
|||||| | ||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
27542876 |
attgaaaacccacttgttgggttctctactctctggtttgttgatcttgatgaaaccaaatccatggagaaaaaagatttttctgtttccttctttct |
27542973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 47836558 - 47836511
Alignment:
| Q |
38 |
tggtttctgagatactgacagaatgtgttccagtctcttctcttttgg |
85 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
47836558 |
tggtttcttaaatactggcagaatgtgttccagtctctcctcttttgg |
47836511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University