View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19494_low_19 (Length: 312)

Name: NF19494_low_19
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19494_low_19
NF19494_low_19
[»] chr5 (16 HSPs)
chr5 (174-291)||(42478573-42478690)
chr5 (4-109)||(42478402-42478508)
chr5 (4-102)||(15030037-15030135)
chr5 (4-64)||(11077487-11077547)
chr5 (42-102)||(17361220-17361280)
chr5 (174-218)||(19844336-19844380)
chr5 (176-218)||(40039290-40039332)
chr5 (178-218)||(27005510-27005550)
chr5 (180-215)||(17489351-17489386)
chr5 (4-88)||(31253852-31253938)
chr5 (176-218)||(40829414-40829456)
chr5 (179-216)||(3674881-3674918)
chr5 (174-215)||(13309885-13309926)
chr5 (4-102)||(26228107-26228207)
chr5 (185-218)||(35165679-35165712)
chr5 (174-218)||(33598963-33599006)
[»] chr6 (7 HSPs)
chr6 (4-102)||(12522328-12522426)
chr6 (180-218)||(11743015-11743053)
chr6 (176-218)||(17182099-17182141)
chr6 (180-217)||(736853-736890)
chr6 (179-215)||(3401087-3401123)
chr6 (174-218)||(9083088-9083132)
chr6 (174-218)||(34036979-34037023)
[»] chr4 (15 HSPs)
chr4 (4-102)||(790719-790817)
chr4 (4-102)||(8016129-8016227)
chr4 (4-93)||(32105606-32105695)
chr4 (174-218)||(31995943-31995987)
chr4 (179-218)||(32901329-32901368)
chr4 (180-218)||(9776365-9776403)
chr4 (174-216)||(32130263-32130305)
chr4 (180-218)||(54251483-54251521)
chr4 (178-215)||(32303316-32303353)
chr4 (193-222)||(36110130-36110159)
chr4 (174-218)||(29227270-29227314)
chr4 (181-217)||(32464638-32464674)
chr4 (174-218)||(44626605-44626649)
chr4 (174-218)||(50506393-50506437)
chr4 (12-93)||(52245238-52245321)
[»] chr3 (21 HSPs)
chr3 (4-95)||(15819889-15819980)
chr3 (19-102)||(37978776-37978859)
chr3 (4-102)||(6512815-6512913)
chr3 (4-102)||(6748308-6748406)
chr3 (4-88)||(6473078-6473162)
chr3 (4-93)||(40475067-40475156)
chr3 (4-102)||(6473595-6473693)
chr3 (176-218)||(28920079-28920121)
chr3 (179-219)||(21239110-21239150)
chr3 (42-102)||(38111861-38111920)
chr3 (176-215)||(42672864-42672903)
chr3 (176-218)||(4494266-4494308)
chr3 (180-218)||(36799398-36799436)
chr3 (180-218)||(44112903-44112941)
chr3 (176-218)||(50559241-50559283)
chr3 (176-218)||(51137065-51137107)
chr3 (4-53)||(4611722-4611771)
chr3 (178-218)||(20549416-20549456)
chr3 (174-210)||(21660114-21660150)
chr3 (174-218)||(32146013-32146057)
chr3 (178-218)||(52100261-52100301)
[»] chr7 (11 HSPs)
chr7 (4-102)||(24056280-24056378)
chr7 (4-102)||(7194040-7194138)
chr7 (4-102)||(18995370-18995468)
chr7 (4-102)||(39605757-39605857)
chr7 (174-214)||(40528485-40528524)
chr7 (174-218)||(42598235-42598279)
chr7 (4-88)||(23846335-23846421)
chr7 (180-218)||(9428436-9428474)
chr7 (177-213)||(19276158-19276194)
chr7 (174-218)||(37352110-37352154)
chr7 (174-218)||(46880902-46880946)
[»] chr1 (13 HSPs)
chr1 (4-102)||(25646732-25646830)
chr1 (5-102)||(32907888-32907985)
chr1 (6-64)||(31038242-31038300)
chr1 (176-218)||(45863750-45863792)
chr1 (188-218)||(3697184-3697214)
chr1 (180-218)||(23554751-23554789)
chr1 (174-220)||(45430797-45430843)
chr1 (176-218)||(46281436-46281478)
chr1 (174-215)||(18639731-18639772)
chr1 (178-215)||(25672344-25672381)
chr1 (174-218)||(17123502-17123546)
chr1 (178-218)||(26585204-26585244)
chr1 (180-220)||(31974718-31974758)
[»] chr8 (10 HSPs)
chr8 (12-82)||(22998396-22998466)
chr8 (174-218)||(45406011-45406055)
chr8 (180-219)||(29913563-29913602)
chr8 (4-66)||(7406526-7406588)
chr8 (177-218)||(4312548-4312589)
chr8 (174-218)||(5849593-5849637)
chr8 (174-218)||(6991835-6991879)
chr8 (178-218)||(14531621-14531661)
chr8 (174-218)||(28772151-28772195)
chr8 (178-218)||(38708327-38708367)
[»] scaffold0625 (1 HSPs)
scaffold0625 (4-102)||(1188-1286)
[»] chr2 (15 HSPs)
chr2 (40-96)||(42757713-42757769)
chr2 (6-100)||(37787152-37787246)
chr2 (7-102)||(20125698-20125795)
chr2 (177-218)||(18531601-18531642)
chr2 (4-64)||(24003208-24003268)
chr2 (176-218)||(1907793-1907835)
chr2 (180-218)||(10288150-10288188)
chr2 (176-218)||(40358141-40358183)
chr2 (177-218)||(4319769-4319810)
chr2 (176-217)||(7502457-7502498)
chr2 (178-215)||(37077792-37077829)
chr2 (174-218)||(21313511-21313555)
chr2 (174-218)||(21738643-21738687)
chr2 (174-218)||(26290878-26290922)
chr2 (193-225)||(40115519-40115551)
[»] scaffold0178 (1 HSPs)
scaffold0178 (176-218)||(9776-9818)
[»] scaffold0069 (1 HSPs)
scaffold0069 (35-102)||(19428-19497)
[»] scaffold2089 (1 HSPs)
scaffold2089 (174-218)||(520-564)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 174 - 291
Target Start/End: Original strand, 42478573 - 42478690
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctcgtctttttcatttaccctagtttaaatgaaacaaaactaatgaatatgctttcat 273  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42478573 tatcacaaaaattgtcaacaaatagttgtacaaatatcatttcacgtctttttcatttaccctagtttaaatgaaacaaaactaatgaatatgcattcat 42478672  T
Q  274 tttataaaacatacgcaa 291  Q
    ||||||||||||||||||    
T  42478673 tttataaaacatacgcaa 42478690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 42478402 - 42478508
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctccccc-aggttata 102  Q
    ||||||||||| ||||| ||||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  42478402 aacaacttcttacgacagcaacaagtataacgtctttttcgagtcaaacagtccaacatcaaagactgatgagaattttgaaacctcccccaaggttata 42478501  T
Q  103 cggtgcc 109  Q
    |||||||    
T  42478502 cggtgcc 42478508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 15030037 - 15030135
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| |||||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  15030037 aacaactccttgcgacaacaacaagcataacgtctctttcgagccaaacagtccaacatcaaagactgatgaggattttgaaacctcccccaagttata 15030135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 11077487 - 11077547
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatca 64  Q
    ||||||| ||||||||| |||||||| || ||||| ||||||| |||||||||||||||||    
T  11077487 aacaactccttgcgacagcaacaagcctaatgtctctttcgagccaaacagtccaacatca 11077547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 17361280 - 17361220
Alignment:
Q  42 tcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||| ||||||||||||||||||| ||||||| | ||||||||||||||| || ||||||    
T  17361280 tcgagccaaacagtccaacatcaaatactgatgaggattttgaaacctccctcaagttata 17361220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 19844336 - 19844380
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  19844336 tatcacaaaagttatcaaaaaatagttgtacaaatatcatttctc 19844380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 40039332 - 40039290
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  40039332 tcacaaaaattatcaaaaaatagttgttcaaatatcatttctc 40039290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 27005510 - 27005550
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  27005510 acaaaaattatcaaaaaataattgtacaaatatcatttctc 27005550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 17489386 - 17489351
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcattt 215  Q
    |||||||||||| |||||||||||||||||||||||    
T  17489386 aaaaattatcaaaaaatagttgtacaaatatcattt 17489351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 31253852 - 31253938
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaa--agactgatgggaattttgaaacc 88  Q
    ||||||| |||||||||||||||||| ||   ||| | ||||| ||||||||||||||||||  |||| |||| | |||||||||||    
T  31253852 aacaactccttgcgacaacaacaagcctaacatctctatcgagccaaacagtccaacatcaaacagaccgatgaggattttgaaacc 31253938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 40829456 - 40829414
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| || |||| |||||||||||||||||||||    
T  40829456 tcacaaaaattattaaaaaatggttgtacaaatatcatttctc 40829414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 3674881 - 3674918
Alignment:
Q  179 caaaaattatcaacaaatagttgtacaaatatcatttc 216  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  3674881 caaaaattatcaagaaataattgtacaaatatcatttc 3674918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 13309926 - 13309885
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcattt 215  Q
    ||||||||||||| |||| |||||||||| ||||||||||||    
T  13309926 tatcacaaaaattgtcaaaaaatagttgttcaaatatcattt 13309885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 26228207 - 26228107
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatca--aagactgatgggaattttgaaacctcccccaggttat 101  Q
    |||||||  |||| ||||||||||||| |   ||| ||||||| |||| ||||||||||||   ||||||||| | ||||||||| |||||||| |||||    
T  26228207 aacaactcattgcaacaacaacaagcacaacatctctttcgagccaaatagtccaacatcaggtagactgatgaggattttgaaatctcccccaagttat 26228108  T
Q  102 a 102  Q
    |    
T  26228107 a 26228107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 35165712 - 35165679
Alignment:
Q  185 ttatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||| ||||||||||||||||||||||||||    
T  35165712 ttatcaaaaaatagttgtacaaatatcatttctc 35165679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 33599006 - 33598963
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||||||| |||||  |||||||||||||||||||    
T  33599006 tatcacaaaaattatcaa-aaatacatgtacaaatatcatttctc 33598963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 12522426 - 12522328
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| |||||||||||||||||||||   ||| ||||||| |||||||||||||||||||||||| || | |||||||||||||||||| ||||||    
T  12522426 aacaactccttgcgacaacaacaagcataacatctctttcgagccaaacagtccaacatcaaagactggtgaggattttgaaacctcccccaagttata 12522328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 11743015 - 11743053
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  11743015 aaaaattatcaaaaaatagttgtacaaatattatttctc 11743053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 17182141 - 17182099
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||||| ||||||||||  ||||||||||||||    
T  17182141 tcacaaaaattatcaaaaaatagttgttaaaatatcatttctc 17182099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 736853 - 736890
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttct 217  Q
    |||||||||||  |||||||||||||||||||||||||    
T  736853 aaaaattatcataaaatagttgtacaaatatcatttct 736890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 3401123 - 3401087
Alignment:
Q  179 caaaaattatcaacaaatagttgtacaaatatcattt 215  Q
    ||||||||||||  |||||||||||||||||||||||    
T  3401123 caaaaattatcacaaaatagttgtacaaatatcattt 3401087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 9083088 - 9083132
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| | || |||||||| |||||||||||||||||    
T  9083088 tatcacaaaaattgttaaaaaatagttatacaaatatcatttctc 9083132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 34037023 - 34036979
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||||||| ||||| | ||| |||||||||||||||    
T  34037023 tatcacaaaaattatcaccaaatggatgttcaaatatcatttctc 34036979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 790817 - 790719
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| |||| |||| |||||||||||   ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  790817 aacaactccttgtgacagcaacaagcataacatctttttcgagccaaacagtccaacatcaaagactgatgaggattttgaaacctcccccaagttata 790719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 8016129 - 8016227
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| ||||||||| |||||||||||  |||| ||||||| |||||| ||||||||||||||||||||   | |||||||||||||||| ||||||    
T  8016129 aacaactccttgcgacatcaacaagcataacgtctctttcgagccaaacaatccaacatcaaagactgatgaagaatttgaaacctcccccatgttata 8016227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 32105606 - 32105695
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccc 93  Q
    ||||||| ||||||||| ||||||||| || |||| ||||||| ||||||||||||||||| ||||||||| | |||||||||| |||||    
T  32105606 aacaactccttgcgacagcaacaagcaaagcgtctctttcgagacaaacagtccaacatcagagactgatgcggattttgaaacatcccc 32105695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 31995943 - 31995987
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  31995943 tatcacaaaatttatcaaaaaatagttgtacaaatatcatttctc 31995987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 32901368 - 32901329
Alignment:
Q  179 caaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  32901368 caaaaattatcaaaaaatagttgtacaaatatcatttctc 32901329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 9776365 - 9776403
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  9776365 aaaaattgtcaaaaaatagttgtacaaatatcatttctc 9776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 32130263 - 32130305
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttc 216  Q
    |||||||||||||||||| |||| ||||| |||||||||||||    
T  32130263 tatcacaaaaattatcaaaaaatggttgttcaaatatcatttc 32130305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 54251483 - 54251521
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  54251483 aaaaattattaaaaaatagttgtacaaatatcatttctc 54251521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 32303316 - 32303353
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcattt 215  Q
    |||||||||||||  |||||||||||||||||||||||    
T  32303316 acaaaaattatcacaaaatagttgtacaaatatcattt 32303353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 36110159 - 36110130
Alignment:
Q  193 aaatagttgtacaaatatcatttctcgtct 222  Q
    ||||||||||||||||||||||||||||||    
T  36110159 aaatagttgtacaaatatcatttctcgtct 36110130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 29227270 - 29227314
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||||||| || | ||||| |||||||||||||||    
T  29227270 tatcacaaaaattatcaaaaagtggttgttcaaatatcatttctc 29227314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 32464638 - 32464674
Alignment:
Q  181 aaaattatcaacaaatagttgtacaaatatcatttct 217  Q
    ||||||||||  |||||||||||||||||||||||||    
T  32464638 aaaattatcataaaatagttgtacaaatatcatttct 32464674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 44626649 - 44626605
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||| ||||||  |||||||||| |||||||||||||||    
T  44626649 tatcacaaaagttatcataaaatagttgttcaaatatcatttctc 44626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 50506437 - 50506393
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||| ||||||||||||| |||| ||||| |||||||||||||||    
T  50506437 tatctcaaaaattatcaaaaaatggttgttcaaatatcatttctc 50506393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 52245321 - 52245238
Alignment:
Q  12 cttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatca--aagactgatgggaattttgaaacctcccc 93  Q
    ||||||| | ||||||||||| ||||| ||||||| ||| |||||| |||| |   ||||||||| ||||| ||||||||||||    
T  52245321 cttgcgaaagcaacaagcataatgtctctttcgagccaagcagtccgacattaggtagactgatgagaattatgaaacctcccc 52245238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 15819980 - 15819889
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctccccca 95  Q
    ||||||| ||||||| |  ||||||||||  |||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||    
T  15819980 aacaactccttgcgatagaaacaagcataacgtctctttcgagccaaacagtccaacatcaaagactgatgaggattttgaaacctccccca 15819889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 37978776 - 37978859
Alignment:
Q  19 caacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||||||||||| |||| |||||||  ||||| |||||||||||||||||||| | |||||||||||||||||| ||||||    
T  37978776 caacaacaagcatagcgtctctttcgagctaaacaatccaacatcaaagactgatgaggattttgaaacctcccccaagttata 37978859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 6512815 - 6512913
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    |||||||  |||| |||||| |||| ||| ||||| ||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||    
T  6512815 aacaactctttgcaacaacagcaagaataatgtctctttcgagccaaacagtccagcatcaaagactgatgaggattttgaaacctcccccaagttata 6512913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 6748406 - 6748308
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| ||||| ||||||||||| ||| ||||| |||||||  ||||| |||| ||||||||||||||| | |||||||||||||||||| ||||||    
T  6748406 aacaactccttgcaacaacaacaagaataatgtctctttcgagctaaacaatccatcatcaaagactgatgaggattttgaaacctcccccaagttata 6748308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 6473078 - 6473162
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacc 88  Q
    ||||||| ||||| ||||||||||| ||| ||||| ||||||| ||||||||||| ||||||||||||||| | |||||||||||    
T  6473078 aacaactccttgcaacaacaacaagaataatgtctctttcgagccaaacagtccatcatcaaagactgatgaggattttgaaacc 6473162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 40475156 - 40475067
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccc 93  Q
    ||||||| ||||||||||||||||||| |   ||| ||||||| ||||||||||||||||| ||||||||| | |||||||||| |||||    
T  40475156 aacaactccttgcgacaacaacaagcaaaacatctctttcgagacaaacagtccaacatcagagactgatgcggattttgaaacatcccc 40475067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 6473595 - 6473693
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    |||||||  |||| ||||||||||| ||| ||||| |||||||  ||| |||||| ||||||||||||||| | ||||||||||||||| || ||||||    
T  6473595 aacaactctttgcaacaacaacaagaataatgtctctttcgagctaaagagtccatcatcaaagactgatgaggattttgaaacctccctcaagttata 6473693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 28920079 - 28920121
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  28920079 tcacaaaaattattatcaaatagttgtacaaatatcatttctc 28920121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 21239110 - 21239150
Alignment:
Q  179 caaaaattatcaacaaatagttgtacaaatatcatttctcg 219  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  21239110 caaaaattatcataaaatagttgtacaaatatcatttctcg 21239150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 38111861 - 38111920
Alignment:
Q  42 tcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||| ||||||||||||||||||| ||||||| | ||||||||||| |||||| ||||||    
T  38111861 tcgagccaaacagtccaacatcaaatactgatgtggattttgaaacc-cccccaagttata 38111920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 42672864 - 42672903
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcattt 215  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  42672864 tcacaaaaattatcaaaaaatagttgtgcaaatatcattt 42672903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 4494266 - 4494308
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||||| |||||||| | |||||||||||||||    
T  4494266 tcacaaaaattatcaaaaaatagttattcaaatatcatttctc 4494308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 36799436 - 36799398
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  36799436 aaaagttatcaaaaaatagttgtacaaatatcatttctc 36799398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 44112941 - 44112903
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  44112941 aaaaattatcaaaaaatagttgtacaaataacatttctc 44112903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 50559241 - 50559283
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||| || |||| ||||||||||||||||||||||||||    
T  50559241 tcacaaaagttgtcaaaaaatagttgtacaaatatcatttctc 50559283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 51137065 - 51137107
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||| |||| || ||||||||||||||||||||||||||    
T  51137065 tcacaaaagttattaaaaaatagttgtacaaatatcatttctc 51137107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 4611722 - 4611771
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaaca 53  Q
    ||||||| ||||| ||||||||||||||| ||||| |||||||| |||||    
T  4611722 aacaactccttgcaacaacaacaagcataatgtctctttcgagttaaaca 4611771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 20549416 - 20549456
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||  |||||| |||||||||||||||||||    
T  20549416 acaaaaattatcataaaatagatgtacaaatatcatttctc 20549456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 21660150 - 21660114
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatat 210  Q
    |||||||||||||||||  ||||||||||||||||||    
T  21660150 tatcacaaaaattatcataaaatagttgtacaaatat 21660114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 32146013 - 32146057
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||| || |||| |||||||||| |||||||||||||||    
T  32146013 tatcacaaaagttgtcaaaaaatagttgttcaaatatcatttctc 32146057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 52100301 - 52100261
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||| || |||| |||||||||||||||||||||    
T  52100301 acaaaaattattaaaaaatggttgtacaaatatcatttctc 52100261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 24056378 - 24056280
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| ||||||||| |||||||||||| |||| |||||||  ||| | ||||||||||||||| |||| | |||||||||||||||||| ||||||    
T  24056378 aacaactccttgcgacagcaacaagcatagcgtctctttcgagctaaaaaatccaacatcaaagaccgatgaggattttgaaacctcccccaagttata 24056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 7194040 - 7194138
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| ||||| ||| | |||| ||||  |||| ||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||    
T  7194040 aacaactccttgcaacagccacaaacataacgtctctttcgagccaaacagtccaacatcaaaaactgatgaggattttgaaacctcccccaagttata 7194138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 18995370 - 18995468
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| ||||||||||||||||||||||||||| |||||||  || || || ||||||||||  |||||  |||||| ||||||| |||| ||||||    
T  18995370 aacaactccttgcgacaacaacaagcatagtgtctctttcgagcaaaccaatctaacatcaaaggttgatgcaaatttttaaacctctcccaagttata 18995468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 39605857 - 39605757
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatca--aagactgatgggaattttgaaacctcccccaggttat 101  Q
    ||||||| ||||||||| ||||||| |||  |||| ||||||| |||||||||||||||||   ||||||||| | |||||| ||||||||| | |||||    
T  39605857 aacaactccttgcgacagcaacaagtataacgtctctttcgagccaaacagtccaacatcaggtagactgatgaggattttgcaacctccccgaagttat 39605758  T
Q  102 a 102  Q
    |    
T  39605757 a 39605757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 40528524 - 40528485
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatt 214  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  40528524 tatcacaaaaattatca-caaatagttgtacaaatatcatt 40528485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 42598235 - 42598279
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| | || ||||||||||||||||||||||||||    
T  42598235 tatcacaaaaattgttaaaaaatagttgtacaaatatcatttctc 42598279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 23846335 - 23846421
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaa--agactgatgggaattttgaaacc 88  Q
    ||||||| ||||||||| |||||||| ||   ||| ||||||| ||||||||||||||||||  |||| |||| | |||||||||||    
T  23846335 aacaactccttgcgacagcaacaagcctaacatctctttcgagccaaacagtccaacatcaaacagaccgatgaggattttgaaacc 23846421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 9428474 - 9428436
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  9428474 aaaaattatcaaaaaatagttgttcaaatatcatttctc 9428436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 19276194 - 19276158
Alignment:
Q  177 cacaaaaattatcaacaaatagttgtacaaatatcat 213  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  19276194 cacaaaaattatcaccaaatagttgtccaaatatcat 19276158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 37352154 - 37352110
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| |||| |||| ||||| |||||||||||||||    
T  37352154 tatcacaaaaattgtcaaaaaatggttgttcaaatatcatttctc 37352110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 46880946 - 46880902
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||| ||||||||||||| |||| ||||| |||||||||||||||    
T  46880946 tatcgcaaaaattatcaaaaaatggttgttcaaatatcatttctc 46880902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 25646732 - 25646830
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| ||||||||| |||||||||||| |||| |||||||  ||| | ||||||||||||||| |||| | |||||||||||||||||| ||||||    
T  25646732 aacaactccttgcgacagcaacaagcatagcgtctctttcgagctaaaaaatccaacatcaaagaccgatgaggattttgaaacctcccccaagttata 25646830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 32907985 - 32907888
Alignment:
Q  5 acaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    |||||| ||||||||||||||||||||| |||||   ||||| |||||| || |||||||||||||| || | |||||||||||||||| | ||||||    
T  32907985 acaactccttgcgacaacaacaagcataatgtctccatcgagccaaacaatctaacatcaaagactggtgaggattttgaaacctccccaaagttata 32907888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 31038242 - 31038300
Alignment:
Q  6 caacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatca 64  Q
    ||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  31038242 caactccttgcgacaacaacaagcataatgtctctttcgagccaaacagtccaacatca 31038300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 45863750 - 45863792
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  45863750 tcacaaaaattatcaaaaaataattgtacaaatatcatttctc 45863792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 3697184 - 3697214
Alignment:
Q  188 tcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||||||||||||||||||||    
T  3697184 tcaacaaatagttgtacaaatatcatttctc 3697214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 23554789 - 23554751
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  23554789 aaaaattatcaaaaaatggttgtacaaatatcatttctc 23554751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 45430843 - 45430797
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctcgt 220  Q
    ||||||||||||||| || ||||| ||||||||||||||||| ||||    
T  45430843 tatcacaaaaattattaaaaaataattgtacaaatatcatttatcgt 45430797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 46281478 - 46281436
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| |  ||||||||||||||||||||||||||    
T  46281478 tcacaaaaattattacaaaatagttgtacaaatatcatttctc 46281436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 18639731 - 18639772
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcattt 215  Q
    |||||||||| ||||||| |||| ||||||||||||||||||    
T  18639731 tatcacaaaagttatcaaaaaatcgttgtacaaatatcattt 18639772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 25672381 - 25672344
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcattt 215  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  25672381 acaaaaattatcaaaaaattgttgtacaaatatcattt 25672344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 17123546 - 17123502
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||||||||| ||||| ||||||| || |||||||||    
T  17123546 tatcacaaaaattatcaataaataattgtacatatgtcatttctc 17123502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 26585204 - 26585244
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||| ||||||  ||||||||||||||||||||||||||    
T  26585204 acaaaagttatcacaaaatagttgtacaaatatcatttctc 26585244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 31974758 - 31974718
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctcgt 220  Q
    |||||||||||| ||||| ||||||||||||||||| ||||    
T  31974758 aaaaattatcaaaaaataattgtacaaatatcatttatcgt 31974718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 22998396 - 22998466
Alignment:
Q  12 cttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaatttt 82  Q
    ||||||||| |||||||||||  |||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  22998396 cttgcgacagcaacaagcataacgtctctttcgagccaaacagtccaacatcaaagactgatgcgaatttt 22998466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 45406011 - 45406055
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||||| || |||||||||| |||||||||||||||    
T  45406011 tatcacaaaaattattaaaaaatagttgttcaaatatcatttctc 45406055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 29913602 - 29913563
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctcg 219  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  29913602 aaaaattatcataaaatagttgtacaaatatcatttctcg 29913563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 7406526 - 7406588
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaa 66  Q
    ||||||| ||||| |||||||||||||||  |||| ||| ||| |||| ||||||||||||||    
T  7406526 aacaactacttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaa 7406588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 4312589 - 4312548
Alignment:
Q  177 cacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  4312589 cacaaaaattatcataaaatagttgttcaaatatcatttctc 4312548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 5849593 - 5849637
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||| ||||||| |||| ||||| |||||||||||||||    
T  5849593 tatcacaaaagttatcaaaaaatggttgttcaaatatcatttctc 5849637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 6991835 - 6991879
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| ||| ||||||| ||| |||||||||||||||    
T  6991835 tatcacaaaaattgtcaccaaatagatgttcaaatatcatttctc 6991879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 14531661 - 14531621
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||| ||||||  ||||||||||||||||||||||||||    
T  14531661 acaaaagttatcataaaatagttgtacaaatatcatttctc 14531621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 28772151 - 28772195
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| |||| |||| ||||| |||||||||||||||    
T  28772151 tatcacaaaaattgtcaaaaaatggttgttcaaatatcatttctc 28772195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 38708327 - 38708367
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| ||||||| ||| |||||||||||||||    
T  38708327 acaaaaattatcaccaaatagatgttcaaatatcatttctc 38708367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 1286 - 1188
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggttata 102  Q
    ||||||| ||||||||||||||||||||||||||| |||||||  || || || ||||||||||  |||||  |||||| ||||||| |||| ||||||    
T  1286 aacaactccttgcgacaacaacaagcatagtgtctctttcgagcaaaccaatctaacatcaaaggttgatgcaaatttttaaacctctcccaagttata 1188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 42757769 - 42757713
Alignment:
Q  40 tttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccag 96  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  42757769 tttcgagccaaacagtccaacatcaaagactgatgcgaattttgaaacatccaccag 42757713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 37787152 - 37787246
Alignment:
Q  6 caacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaaagactgatgggaattttgaaacctcccccaggtta 100  Q
    ||||| ||||||||| |||||||||||| |||| ||||  | |||| |||||||||||| | ||||||  | |||||||||||||||||| ||||    
T  37787152 caactccttgcgacagcaacaagcatagcgtctctttcatgccaaagagtccaacatcataaactgataaggattttgaaacctcccccaagtta 37787246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 20125795 - 20125698
Alignment:
Q  7 aacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatcaa--agactgatgggaattttgaaacctcccccaggttata 102  Q
    |||| |||||||||| |||||| |||  |||| |||| || |||| ||||||||||||   ||||||||| | |||||||||||||||||| ||||||    
T  20125795 aactccttgcgacaagaacaagtataacgtctctttcaagccaaatagtccaacatcatgtagactgatgaggattttgaaacctcccccaagttata 20125698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 18531642 - 18531601
Alignment:
Q  177 cacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  18531642 cacaaaaattgtcaaaaaatagttgtacaaatatcatttctc 18531601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 24003208 - 24003268
Alignment:
Q  4 aacaacttcttgcgacaacaacaagcatagtgtctttttcgagtcaaacagtccaacatca 64  Q
    ||||||| ||||||||| |||||| ||||  |||| ||||||| |||||||||||||||||    
T  24003208 aacaactccttgcgacagcaacaaacataacgtctctttcgagccaaacagtccaacatca 24003268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 1907793 - 1907835
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| || |||||||||||||||||| |||||||    
T  1907793 tcacaaaaattattaaaaaatagttgtacaaatattatttctc 1907835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 10288188 - 10288150
Alignment:
Q  180 aaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  10288188 aaaaattatcacaaaatagttgtacaaatatcatttctc 10288150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 40358141 - 40358183
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| || ||||||||||| ||||||||||||||    
T  40358141 tcacaaaaattattaaaaaatagttgtagaaatatcatttctc 40358183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 4319810 - 4319769
Alignment:
Q  177 cacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    |||||||||||| |  ||||||||||||||||||||||||||    
T  4319810 cacaaaaattattataaaatagttgtacaaatatcatttctc 4319769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 7502457 - 7502498
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttct 217  Q
    ||||||||||| |||| |||| ||||||||||||||||||||    
T  7502457 tcacaaaaattgtcaaaaaatggttgtacaaatatcatttct 7502498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 37077829 - 37077792
Alignment:
Q  178 acaaaaattatcaacaaatagttgtacaaatatcattt 215  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  37077829 acaaaaattatcaaaaaatagttgttcaaatatcattt 37077792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 21313511 - 21313555
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||||||||  |||  ||||||||||||||||||||    
T  21313511 tatcacaaaaattatcaaagaatgattgtacaaatatcatttctc 21313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 21738643 - 21738687
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||||| |  |||| |||||||||||||||||||||    
T  21738643 tatcacaaaaattattagaaaatggttgtacaaatatcatttctc 21738687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 26290878 - 26290922
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||||| || |||| ||||||||||||| |||||||    
T  26290878 tatcacaaaaattattaaaaaatggttgtacaaatataatttctc 26290922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 40115551 - 40115519
Alignment:
Q  193 aaatagttgtacaaatatcatttctcgtctttt 225  Q
    |||||||||||||||||||||||||| ||||||    
T  40115551 aaatagttgtacaaatatcatttctcttctttt 40115519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 9818 - 9776
Alignment:
Q  176 tcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| || |||| |||||||||||||||||||||    
T  9818 tcacaaaaattataaaaaaatggttgtacaaatatcatttctc 9776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 19428 - 19497
Alignment:
Q  35 gtctttttcgagtcaaacagtccaacatcaa--agactgatgggaattttgaaacctcccccaggttata 102  Q
    |||| ||||||| ||||||||||| |||||   ||||||||| | |||||||||||||||||| ||||||    
T  19428 gtctctttcgagccaaacagtccagcatcaggtagactgatgaggattttgaaacctcccccaagttata 19497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2089 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 520 - 564
Alignment:
Q  174 tatcacaaaaattatcaacaaatagttgtacaaatatcatttctc 218  Q
    ||||||||||||| | || ||||||||| ||||||||||||||||    
T  520 tatcacaaaaatttttaaaaaatagttgaacaaatatcatttctc 564  T

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