View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_2 (Length: 507)
Name: NF19494_low_2
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 43654015 - 43654489
Alignment:
| Q |
19 |
tatcagagtccaaaggaaataaaaattaagtcaacttatgttgcaaggaacaaagggtgtaatcaaagattgtggttggcgtgtggataaggtgagattg |
118 |
Q |
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| T |
43654015 |
tatcagagtccaaaggaaataaaaattaagtcaacttatgttgcaaggaacaaagggtgtaatcaaagattgtggttggcgtgtggataaggtgagattg |
43654114 |
T |
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| Q |
119 |
cattgatttcctattggcaaatcttgttctctttgatgtatttggggcatttcagtccacatacttcaaatagtttaggacccactacaatttcatatgc |
218 |
Q |
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| T |
43654115 |
cattgatttcctattggcaaatcttgttctctttgatgtatttggggcatttcagtccacatagttcaaatagtttaggacccactacaatttcatatgc |
43654214 |
T |
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| Q |
219 |
aattcatatgcctaggtggataaatttttag---------------tttgcaaggaccaaaagttgggatacggtgctttgctaactaatcataattaaa |
303 |
Q |
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| T |
43654215 |
aattcatatgcctaggtggataaatttttagagtgaattattttaatttgcaaggaccaaaagttgggatacggtgctttgctaactaatcataattaaa |
43654314 |
T |
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| Q |
304 |
atatttaattttcaattaacctctagtatttctacaacttaagnnnnnnngggttcattatgagactaatatcatgaacatctcgttcttttattaaaag |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43654315 |
atatttaattttcaattaacctctagtatttctacaacttaag-ttttttggatccattatgagactaatatcatcaacatctcgttcttttattaaaag |
43654413 |
T |
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| Q |
404 |
agagtcatgttatcaactcttcaaacactgtgatgttattgttgttattatgattattattataaaaatttctcaa |
479 |
Q |
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| T |
43654414 |
agagttatgttatcaactcttcaaacactgtgatgttattgttgttattatgattattattataaaaatttctcaa |
43654489 |
T |
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