View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_22 (Length: 292)
Name: NF19494_low_22
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 32508430 - 32508162
Alignment:
| Q |
11 |
atgaatatttaggtgtcaagcattaagtttgcgaa-ttatttttactaaaggattgtttaattggttctagaatttcatgcacactccgcactttatctg |
109 |
Q |
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| T |
32508430 |
atgaatatttaggtgtcaagcattaagtttgtgaaattatttttactaaaggattgtttaattggttctagaatttcatgcacactccgcactttatctg |
32508331 |
T |
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| Q |
110 |
tttgatcaccaatcattgttatgatcaatatgtcatagagcttgttgcattttgattttattaataatgaagttagcaatacaagagggtgcatggataa |
209 |
Q |
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| T |
32508330 |
tttgatcaccaatcattgttatgatcaatatgtcatagagcttgttgcattttgattttattaataatgaagttagcaatacaagagggtgcatggataa |
32508231 |
T |
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| Q |
210 |
aatatgacgactaggtataaattgtgttgctctagctaaatcatgagtcacagtcacaccattgatttg |
278 |
Q |
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| T |
32508230 |
aatatgaggactaggtataaattgtgttgctctagctaaatcatgagtcacagtcacaccattgatttg |
32508162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 21903245 - 21903152
Alignment:
| Q |
164 |
attttattaataatgaagttagcaatacaagagggtgcatggataaaatatgacgactaggtataaattgtgttgctctagctaaatcatgagt |
257 |
Q |
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| T |
21903245 |
attttattaataataaagtgagcaatacaagagggtgcatggataaaatatgaggcctagctataaattgtgttgctatagctaaatcatgagt |
21903152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 32512949 - 32512844
Alignment:
| Q |
44 |
aattatttttactaaaggattgtttaattggttctagaatttcatgcacactccgcactttatctgtttgatcaccaatcattgttatgatcaatatgtc |
143 |
Q |
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| T |
32512949 |
aattaattgtactaaaggattgtttaattggttctagaatttcatgcatgctactcactttatctgtttgataacccatccttgttaagatcaatatttc |
32512850 |
T |
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| Q |
144 |
atagag |
149 |
Q |
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|||||| |
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| T |
32512849 |
atagag |
32512844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 21903447 - 21903352
Alignment:
| Q |
11 |
atgaatatttaggtgtcaagcattaagtttgcgaa-ttatttttactaaaggattgtttaattggttctagaatttcatgcacactccgcacttta |
105 |
Q |
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||||||||| ||||||||||||| ||| || ||| |||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |
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| T |
21903447 |
atgaatattcaggtgtcaagcataaagcttatgaaattatttgtactaaaggattgtttaattggttctagaatttcatacacgctcctcacttta |
21903352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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