View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19494_low_23 (Length: 291)

Name: NF19494_low_23
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19494_low_23
NF19494_low_23
[»] chr1 (1 HSPs)
chr1 (66-283)||(50966624-50966841)
[»] chr7 (2 HSPs)
chr7 (67-283)||(48658393-48658609)
chr7 (67-283)||(48659524-48659740)
[»] chr6 (3 HSPs)
chr6 (67-283)||(31085054-31085270)
chr6 (67-278)||(31595313-31595524)
chr6 (178-283)||(31081006-31081111)
[»] chr2 (2 HSPs)
chr2 (67-283)||(9310277-9310493)
chr2 (67-276)||(9306116-9306325)
[»] chr3 (2 HSPs)
chr3 (67-283)||(10134412-10134629)
chr3 (18-66)||(7127597-7127645)
[»] chr4 (1 HSPs)
chr4 (66-271)||(20051832-20052036)
[»] scaffold0012 (1 HSPs)
scaffold0012 (67-219)||(154587-154734)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 66 - 283
Target Start/End: Complemental strand, 50966841 - 50966624
Alignment:
Q  66 ttgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttag 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50966841 ttgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttag 50966742  T
Q  166 gcatcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagcctt 265  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50966741 gcatcagttatgttaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagcctt 50966642  T
Q  266 ttgcatcatatttgctct 283  Q
    ||||||||||||| ||||    
T  50966641 ttgcatcatattttctct 50966624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 67 - 283
Target Start/End: Original strand, 48658393 - 48658609
Alignment:
Q  67 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48658393 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 48658492  T
Q  167 catcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 266  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48658493 catcagttatgttaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatacacaagccttt 48658592  T
Q  267 tgcatcatatttgctct 283  Q
    |||||||||||||||||    
T  48658593 tgcatcatatttgctct 48658609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 67 - 283
Target Start/End: Original strand, 48659524 - 48659740
Alignment:
Q  67 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48659524 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 48659623  T
Q  167 catcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 266  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48659624 catcagttatgttaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 48659723  T
Q  267 tgcatcatatttgctct 283  Q
    |||||||||||| ||||    
T  48659724 tgcatcatattttctct 48659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 67 - 283
Target Start/End: Original strand, 31085054 - 31085270
Alignment:
Q  67 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31085054 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 31085153  T
Q  167 catcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 266  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31085154 catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 31085253  T
Q  267 tgcatcatatttgctct 283  Q
    |||||||||||| ||||    
T  31085254 tgcatcatattttctct 31085270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 67 - 278
Target Start/End: Original strand, 31595313 - 31595524
Alignment:
Q  67 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 166  Q
    |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  31595313 tgtttaatgaatgatccttgacgtttctcagtcagttttaattctcctaaattctaggcaataaagattaagtgactgatttgatttctttttatttagg 31595412  T
Q  167 catcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 266  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||    
T  31595413 catcagttatgctaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataaaatacaagtattt 31595512  T
Q  267 tgcatcatattt 278  Q
    ||||||||||||    
T  31595513 tgcatcatattt 31595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 31081006 - 31081111
Alignment:
Q  178 ttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttttgcatcatatt 277  Q
    |||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081006 ttaattagtggcaatgtatctgcctttctactttccttatgattgtataagtacaccagtctttcctgctaaataatatacaagccttttgcatcatatt 31081105  T
Q  278 tgctct 283  Q
    | ||||    
T  31081106 ttctct 31081111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 67 - 283
Target Start/End: Original strand, 9310277 - 9310493
Alignment:
Q  67 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9310277 tgtttaatgaatgacccttgaagcttctcaatcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 9310376  T
Q  167 catcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 266  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9310377 catcagttatgttaattagtggcaacgtatatgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataaaatacaagccttt 9310476  T
Q  267 tgcatcatatttgctct 283  Q
    |||||||||||| ||||    
T  9310477 tgcatcatattttctct 9310493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 67 - 276
Target Start/End: Original strand, 9306116 - 9306325
Alignment:
Q  67 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 166  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9306116 tgtttaatgaatgacccttgaagcttttcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 9306215  T
Q  167 catcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 266  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  9306216 catcagttatgttaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctactaaataaaaaacaagccttt 9306315  T
Q  267 tgcatcatat 276  Q
    ||||||||||    
T  9306316 tgcatcatat 9306325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 67 - 283
Target Start/End: Original strand, 10134412 - 10134629
Alignment:
Q  67 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 166  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  10134412 tgtttaatgaatgacccttgaagcttttcagtcagttttaattctcctaaattccaggcaataaagaataagtggctgatttgttttccttttatttagg 10134511  T
Q  167 catcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt 266  Q
    |||||| |||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  10134512 catcagctatgttaattagtggcaatgtatttgcctttctactttccttagggctgtataagtacaccagtctttcctgctaaataatatacaagccttt 10134611  T
Q  267 tgca-tcatatttgctct 283  Q
    |||| |||||||| ||||    
T  10134612 tgcattcatattttctct 10134629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 7127645 - 7127597
Alignment:
Q  18 agtccaaatcaagcattctcaaaacttaggagctaatttaatttgagtt 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127645 agtccaaatcaagcattctcaaaacttaggagctaatttaatttgagtt 7127597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 66 - 271
Target Start/End: Complemental strand, 20052036 - 20051832
Alignment:
Q  66 ttgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttag 165  Q
    |||||||||||||||||| ||||||| | ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20052036 ttgtttaatgaatgacccatgaagctgcacagtcagttatgattctcctaaattataggcaataaagattaagtggctgatttgatttccttttatttag 20051937  T
Q  166 gcatcagttatgttaattagtggcaacgtatttgcttttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagcctt 265  Q
    ||||||||||||| ||||||| ||||||| | ||| |||||||||| ||||||| |||||||||| | |||| ||||||||||||||||| ||| |||||    
T  20051936 gcatcagttatgtcaattagtagcaacgtttctgcctttctacttttcttatggctgtataagtaga-cagtatttcctgctaaataatacacaggcctt 20051838  T
Q  266 ttgcat 271  Q
    ||||||    
T  20051837 ttgcat 20051832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 154734 - 154587
Alignment:
Q  67 tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg 166  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||  ||||||||||| ||||||||||||    
T  154734 tgtttaatgaatgacccttgaagcttctcagtcggttttaattctcctaaaatctaggcaataaagattaattgattgatttgattttcttttatttagg 154635  T
Q  167 catcagttatgttaattagtggcaacgtatttgcttttctactttccttatgg 219  Q
    ||     ||||||||||||||||||||||||||| | ||||||||||||||||    
T  154634 ca-----tatgttaattagtggcaacgtatttgcctctctactttccttatgg 154587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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