View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_26 (Length: 277)
Name: NF19494_low_26
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 41691510 - 41691252
Alignment:
| Q |
14 |
caaagaacatgtgcatatattagtcaacataatcttcatcatggagagatgacagtaagagagactttggatttttcgggacgatgcttgggagttggaa |
113 |
Q |
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| T |
41691510 |
caaagaacatgtgcatatattagtcaacataatcttcatcatggagagatgacagtaagagagactttggatttttcgggacgatgcttgggagttggaa |
41691411 |
T |
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| Q |
114 |
caaggcatgacctacttgtcgaaacgacaaggagagaaaagcaagcaggaatcaaacctgatccagatatagatgcattcatgaaagccactgcaatgag |
213 |
Q |
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| T |
41691410 |
caaggcatgacctacttgtcgaaacaacaaggagagaaaagcaagcaggaatcaaacctgatccagatatagatgcattcatgaaagccacagcaatgag |
41691311 |
T |
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| Q |
214 |
aggtcaagaaacaagtttgatcacagattatgttcttaaggtttgatgcctttgcttct |
272 |
Q |
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| T |
41691310 |
aggtcaagaaacaagtttgatcacagattatgttcttaaggtttgatgcctttgtttct |
41691252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 19538568 - 19538812
Alignment:
| Q |
14 |
caaagaacatgtgcatatattagtcaacataatcttcatcatggagagatgacagtaagagagactttggatttttcgggacgatgcttgggagttggaa |
113 |
Q |
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| T |
19538568 |
caaagaacatgtgcttatattagtcagcatgatcttcaccatggagaaacgacagtgagagagacgctggacttctccggacgctgcttgggagttggaa |
19538667 |
T |
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| Q |
114 |
caaggcatgacctacttgtc-gaaacgacaaggagagaaaagcaagcaggaatcaaacctgatccagatatagatgcattcatgaaagccactgcaatga |
212 |
Q |
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| T |
19538668 |
caaggtatgatatg-ttgacagaattgtcaagacgtgaaaaagcagcaggtatcaaaccagatcctgaaatagatgctttcatgaaagtaacatcaatgg |
19538766 |
T |
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| Q |
213 |
gaggtcaagaaacaagtttgatcacagattatgttcttaaggtttg |
258 |
Q |
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| T |
19538767 |
aaggtcaagaaacaagtcttgttacagattatattctcaaggtttg |
19538812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 42136405 - 42136298
Alignment:
| Q |
16 |
aagaacatgtgcatatattagtcaacataatcttcatcatggagagatgacagtaagagagactttggatttttcgggacgatgcttgggagttggaaca |
115 |
Q |
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|||||||||||| |||||| || ||||| | |||||| ||||||| ||||| || |||||| | || |||||||| ||||| || || || ||||||||| |
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| T |
42136405 |
aagaacatgtgcctatattggtgaacatgaccttcattatggagaaatgacggtgagagagtcattagatttttcaggacgctgtttaggcgttggaaca |
42136306 |
T |
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| Q |
116 |
aggcatga |
123 |
Q |
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||| |||| |
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| T |
42136305 |
aggtatga |
42136298 |
T |
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