View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19494_low_29 (Length: 260)

Name: NF19494_low_29
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19494_low_29
NF19494_low_29
[»] chr5 (5 HSPs)
chr5 (22-250)||(34039979-34040225)
chr5 (196-236)||(14665666-14665706)
chr5 (170-250)||(24178452-24178532)
chr5 (197-250)||(28977144-28977197)
chr5 (170-250)||(3301786-3301866)
[»] chr4 (9 HSPs)
chr4 (170-250)||(37797794-37797874)
chr4 (170-250)||(33227151-33227231)
chr4 (170-237)||(436184-436251)
chr4 (170-251)||(27983141-27983222)
chr4 (170-250)||(12494692-12494772)
chr4 (197-250)||(1777302-1777355)
chr4 (197-250)||(48622828-48622881)
chr4 (197-250)||(50286913-50286966)
chr4 (170-250)||(31960074-31960154)
[»] chr3 (4 HSPs)
chr3 (170-250)||(47233856-47233936)
chr3 (196-250)||(33272314-33272368)
chr3 (170-250)||(52138742-52138822)
chr3 (170-250)||(22015-22095)
[»] scaffold0036 (1 HSPs)
scaffold0036 (196-250)||(4558-4612)
[»] chr7 (11 HSPs)
chr7 (170-250)||(12841535-12841615)
chr7 (196-250)||(33350092-33350146)
chr7 (196-244)||(27021992-27022040)
chr7 (170-250)||(34869362-34869442)
chr7 (170-250)||(35906461-35906541)
chr7 (170-250)||(39906630-39906710)
chr7 (170-250)||(49029218-49029298)
chr7 (170-237)||(13859268-13859335)
chr7 (196-250)||(44855458-44855512)
chr7 (170-250)||(31005165-31005245)
chr7 (170-250)||(37617886-37617966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (170-237)||(82676-82743)
[»] chr8 (7 HSPs)
chr8 (196-245)||(7046281-7046330)
chr8 (196-250)||(36545089-36545143)
chr8 (196-250)||(40813264-40813318)
chr8 (197-234)||(18125133-18125170)
chr8 (198-250)||(12492130-12492182)
chr8 (170-250)||(36395210-36395290)
chr8 (170-250)||(36565501-36565581)
[»] chr2 (4 HSPs)
chr2 (197-250)||(45367911-45367964)
chr2 (170-250)||(8180722-8180802)
chr2 (196-250)||(38429826-38429880)
chr2 (170-251)||(41197488-41197569)
[»] scaffold0157 (1 HSPs)
scaffold0157 (170-250)||(25705-25785)
[»] chr6 (2 HSPs)
chr6 (170-250)||(9706718-9706798)
chr6 (170-250)||(28085318-28085398)
[»] chr1 (9 HSPs)
chr1 (170-250)||(9592676-9592756)
chr1 (171-250)||(30202391-30202470)
chr1 (196-250)||(9509260-9509314)
chr1 (197-250)||(8671862-8671915)
chr1 (170-235)||(32231214-32231279)
chr1 (196-237)||(51441051-51441092)
chr1 (170-250)||(696211-696291)
chr1 (170-250)||(1210687-1210767)
chr1 (170-250)||(34792609-34792689)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 34040225 - 34039979
Alignment:
Q  22 acgatgttatatcataaattatatttgaatctaaaacattaaccttaaaatattttgtaatagtttct------------------aatatatatttgat 103  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||                  | ||||||||||||    
T  34040225 acgatgttatatcataaattatatttgaatctaaaacactaaccttaaaatattttataatagtttcttttattgttttttacactagtatatatttgat 34040126  T
Q  104 ttattcttcttactacgacatttatatgtattctttgtgcatgtccaaaacacatacataagcttattttctactatacatgctacattcattctctctc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34040125 ttattcttcttactacgacatttatatgtattctttgtgcatgtccaaaacacatacataagcttattttctactatacatgctacattcattctctctc 34040026  T
Q  204 taatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  34040025 taatggtgtaatttttaatcctatcatatctagttttatcattcatc 34039979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 14665706 - 14665666
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctag 236  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  14665706 tctctctctaatggtgtcatttctaatcctatcatgtctag 14665666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 24178532 - 24178452
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| ||| ||||||||||||||| |||| ||| || |||||    
T  24178532 ttttctactataggtgctacccccactctctctctaatggtgtcattcttaatcctatcatgtatagtcttaccactcatc 24178452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 28977144 - 28977197
Alignment:
Q  197 ctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    |||||||||||||||| |||  |||||||||||| |||||||||| || |||||    
T  28977144 ctctctctaatggtgtcattcctaatcctatcatttctagttttaccactcatc 28977197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 3301866 - 3301786
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||   |||||  ||| ||||||||||||||||  |||  ||||||||||||||||||| ||| || |||||    
T  3301866 ttttctactataggggctaccctcactctctctctaatggtgacattcctaatcctatcatgtctagtcttaccactcatc 3301786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 37797874 - 37797794
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  |||||| | || ||||||||||||||||| |||| ||||| ||||||||||||| |||||| |||||    
T  37797874 ttttctactataggtgctacctccactctctctctaatggtgtcatttctaatcttatcatgtctagtcttatcactcatc 37797794  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 33227231 - 33227151
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| ||| |||||||||||||||||||| ||| || |||||    
T  33227231 ttttctactataggtgctacccccactctctctctaatggtgtcattcttaatcctatcatgtctagtcttaccactcatc 33227151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 436251 - 436184
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagt 237  Q
    ||||||||||||  ||||||   || ||||||||||||||||| ||| ||||||||||||||||||||    
T  436251 ttttctactataggtgctacccccactctctctctaatggtgtcattcttaatcctatcatgtctagt 436184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 27983222 - 27983141
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatct 251  Q
    ||||||||||||  ||||||  ||| ||||||||||||||||| |||  |||||||||||||| |||| ||| || ||||||    
T  27983222 ttttctactataggtgctaccctcactctctctctaatggtgtcattcctaatcctatcatgtatagtcttaccactcatct 27983141  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 12494772 - 12494692
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  12494772 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 12494692  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 1777302 - 1777355
Alignment:
Q  197 ctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  1777302 ctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 1777355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 48622828 - 48622881
Alignment:
Q  197 ctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  48622828 ctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 48622881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 50286966 - 50286913
Alignment:
Q  197 ctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  50286966 ctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 50286913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 31960074 - 31960154
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  31960074 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctgtctagtcttaccactcatc 31960154  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 47233856 - 47233936
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  |||||| | |||||||||||||||||||| |||| ||||| ||||||||||||| ||| || |||||    
T  47233856 ttttctactataggtgctacctccattctctctctaatggtgtcatttctaatcttatcatgtctagtcttaccactcatc 47233936  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 33272314 - 33272368
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||| || |||||    
T  33272314 tctctctctaatggtgtcattcttaatcctatcatgtctagtcttaccactcatc 33272368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 52138822 - 52138742
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  52138822 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 52138742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 22095 - 22015
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||  |||  ||||||||||||||||||| ||| || |||||    
T  22095 ttttctactataggtgctacccccactctctctctaatggtgacattcctaatcctatcatgtctagtcttaccactcatc 22015  T

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Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 4558 - 4612
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||    
T  4558 tctctctctaatggtgtcatttataatcctatcatgtctagtcttaccattcatc 4612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 12841535 - 12841615
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  |||||| | || |||||||||||||| || |||  ||||||||||||||||||||||| || |||||    
T  12841535 ttttctactataggtgctacctccactctctctctaatggggtcattcctaatcctatcatgtctagttttaccactcatc 12841615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 33350092 - 33350146
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||| || |||||    
T  33350092 tctctctctaatggtgtcattcttaatcctatcatgtctagtcttaccactcatc 33350146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 27021992 - 27022040
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatca 244  Q
    ||||||||||||| ||| ||||||||||||||| |||||||| ||||||    
T  27021992 tctctctctaatgttgtcatttttaatcctatcctgtctagtcttatca 27022040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 34869442 - 34869362
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  34869442 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 34869362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 35906461 - 35906541
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  |||||| | || ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  35906461 ttttctactataggtgctacctccactctctctctaatggtgtcattcctaatcctatcctgtctagtcttaccactcatc 35906541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 39906630 - 39906710
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||  ||| ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  39906630 ttttctactataggtgctaccctcactctctctctaatggtgtcattcctaatcctatcctgtctagtcttaccactcatc 39906710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 49029298 - 49029218
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  49029298 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 49029218  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 13859268 - 13859335
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagt 237  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||||||||||||    
T  13859268 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagt 13859335  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 44855458 - 44855512
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  44855458 tctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 44855512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 31005245 - 31005165
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  31005245 ttttctactataggtgctacccccactctctctctaatggtgttattcctaatcctatcctgtctagtcttaccactcatc 31005165  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 37617966 - 37617886
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  37617966 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcttgtctagtcttaccactcatc 37617886  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 82743 - 82676
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagt 237  Q
    ||||||||||||  ||||||   || ||||||||||||||||| ||| ||||||||||||||||||||    
T  82743 ttttctactataggtgctacccccactctctctctaatggtgtcattcttaatcctatcatgtctagt 82676  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 7046330 - 7046281
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcat 245  Q
    ||||||||||||| ||| |||| ||||||||||||||||||| |||||||    
T  7046330 tctctctctaatgttgtcatttctaatcctatcatgtctagtcttatcat 7046281  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 36545143 - 36545089
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  36545143 tctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 36545089  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 40813318 - 40813264
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||| ||| |||||||||| ||||||||| ||| || |||||    
T  40813318 tctctctctaatggtgtcattcttaatcctattatgtctagtcttaccactcatc 40813264  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 18125170 - 18125133
Alignment:
Q  197 ctctctctaatggtgtaatttttaatcctatcatgtct 234  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  18125170 ctctctctaatggtgtcatttctaatcctatcatgtct 18125133  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 12492130 - 12492182
Alignment:
Q  198 tctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  12492130 tctctctaatggtgtcattcataatcctatcatgtctagtcttaccactcatc 12492182  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 36395210 - 36395290
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  36395210 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctgtctagtcttaccactcatc 36395290  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 36565501 - 36565581
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  36565501 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctgtctagtcttaccactcatc 36565581  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 45367911 - 45367964
Alignment:
Q  197 ctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    |||||||||||||||| ||| ||||||||||| |||||||| ||| ||||||||    
T  45367911 ctctctctaatggtgtcattcttaatcctatcttgtctagtcttaccattcatc 45367964  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 8180802 - 8180722
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  8180802 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 8180722  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 38429880 - 38429826
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  38429880 tctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 38429826  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 41197488 - 41197569
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatct 251  Q
    ||||||| ||||  ||||||  ||| ||| ||||||||||||| |||  ||||||||||||||||||| ||| || ||||||    
T  41197488 ttttctattataggtgctaccctcactctatctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatct 41197569  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 25705 - 25785
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  25705 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 25785  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 9706798 - 9706718
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    |||||||| |||  |||||| | || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  9706798 ttttctacaataggtgctacctccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 9706718  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 28085398 - 28085318
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  28085398 ttttctactataggtgctacccccactctctctctaatggtgtcattcgtaatcctatcatgtctagtcttaccactcatc 28085318  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 9592756 - 9592676
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  9592756 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 9592676  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 30202391 - 30202470
Alignment:
Q  171 tttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    |||||||||||  ||||||   || ||||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  30202391 tttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 30202470  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 9509314 - 9509260
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||||||| |||| ||||| |||| |||||||| |||||| |||||    
T  9509314 tctctctctaatggtgtcatttctaatcatatcctgtctagtcttatcactcatc 9509260  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 8671915 - 8671862
Alignment:
Q  197 ctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||| || |||||    
T  8671915 ctctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatc 8671862  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 32231214 - 32231279
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtcta 235  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||||||||||    
T  32231214 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgtcta 32231279  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 51441051 - 51441092
Alignment:
Q  196 tctctctctaatggtgtaatttttaatcctatcatgtctagt 237  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  51441051 tctctctctaatggtgtcattcctaatcctatcatgtctagt 51441092  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 696291 - 696211
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  696291 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctgtctagtcttaccactcatc 696211  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 1210767 - 1210687
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||||| |||  |||||||||| |||||||| ||| || |||||    
T  1210767 ttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctgtctagtcttaccactcatc 1210687  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 34792609 - 34792689
Alignment:
Q  170 ttttctactatacatgctacattcattctctctctaatggtgtaatttttaatcctatcatgtctagttttatcattcatc 250  Q
    ||||||||||||  ||||||   || ||||||||||||||| | |||  ||||||||||||||||||| ||| || |||||    
T  34792609 ttttctactataggtgctacccccactctctctctaatggtttcattcctaatcctatcatgtctagtcttaccactcatc 34792689  T

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