View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_30 (Length: 250)
Name: NF19494_low_30
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_30 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 7292501 - 7292738
Alignment:
| Q |
13 |
aatattccacgtcacatggatcttcatttcttcttccaaccatcgttagaacaatgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaat |
112 |
Q |
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| T |
7292501 |
aatattccacgtcacatggatcttcatttcttcttccaaccatcgttagaacaatgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaat |
7292600 |
T |
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| Q |
113 |
cgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggacttgtgtcgctgatgtaaatgttacccttattgttatctataccttcg |
212 |
Q |
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| T |
7292601 |
cgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggacttgtgtcgctgatgtaaatgttacccttattgttatctataccttcg |
7292700 |
T |
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| Q |
213 |
ggaacctaattaaccaaacaaataaaaatcaattagac |
250 |
Q |
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| T |
7292701 |
ggaacctaattaaccaaacaaataaaaatcaattagac |
7292738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 7297546 - 7297745
Alignment:
| Q |
23 |
gtcacatggatcttcatttcttcttccaaccatcgttagaacaatgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtct |
122 |
Q |
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| T |
7297546 |
gtcacatggatcttcatttcttcttcctggcattgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtct |
7297645 |
T |
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| Q |
123 |
ctttgaaattgctcgtagtaagccttgacgacatttgagggacttgtgtcgctgatgtaaatgttacccttattgttatctataccttcgggaacctaat |
222 |
Q |
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| T |
7297646 |
cttttaaattgatcatagtatgctttgacaacatttgagggacttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaat |
7297745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 225
Target Start/End: Original strand, 32627448 - 32627607
Alignment:
| Q |
66 |
atgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggac |
165 |
Q |
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| T |
32627448 |
atgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggc |
32627547 |
T |
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| Q |
166 |
ttgtgtcgctgatgtaaatgttacccttattgttatctataccttcgggaacctaattaa |
225 |
Q |
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| T |
32627548 |
ttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaa |
32627607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 32709020 - 32709105
Alignment:
| Q |
57 |
gttagaacaatgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagta |
142 |
Q |
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| T |
32709020 |
gttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaagagaaaaatcactttgaaattggttgtagta |
32709105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 21943172 - 21943319
Alignment:
| Q |
57 |
gttagaacaatgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagtaagccttgacgacat |
156 |
Q |
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| T |
21943172 |
gttataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatctctatgaaattgctcatagtaagccttgaagacat |
21943271 |
T |
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| Q |
157 |
ttgagggacttgt-gtcgctgatgtaaatgttacccttattgttatcta |
204 |
Q |
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| T |
21943272 |
ttgaggggcttgtggtcgc-caagtaaatgttgcccttattgttgtcta |
21943319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 5811103 - 5811177
Alignment:
| Q |
96 |
cgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggacttgtg |
170 |
Q |
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| T |
5811103 |
cgacacttgagaaaaaaagagaaatctgtttgaaattgcttgtagtaagccttgtggacatttgaggggcttgtg |
5811177 |
T |
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