View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19494_low_35 (Length: 232)
Name: NF19494_low_35
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 21906147 - 21905945
Alignment:
| Q |
15 |
aatactgatgttcaatgatgtatacatgtatgtttgcactccaacgctcatgtcggtatatgattgtggttggtaaaatctcaagaaaatttcttagaaa |
114 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
21906147 |
aatattgatgttcaatgatgtatatatgtatgtttgcactccaacgctcatgtcagtatatgattgtggttagtaaaatctcaagaaaatttcatagaaa |
21906048 |
T |
|
| Q |
115 |
tgtcaaatgcagcccgctgttgaaaacatctaaaaaagtgtgctacaaattatagtagtaaatgtagtgaagtcagaaatttacaagtatagtaattcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21906047 |
tgtcaaatgcagcccgctgttgaaaacatctaaaaaagtgtgctacaaattatagtagtaaatgtagtgaagtcagaaatttacaagtatagtaattcat |
21905948 |
T |
|
| Q |
215 |
atg |
217 |
Q |
| |
|
||| |
|
|
| T |
21905947 |
atg |
21905945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University