View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_39 (Length: 223)
Name: NF19494_low_39
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 17586083 - 17586276
Alignment:
| Q |
16 |
gttttctcgtcattttcattttctttagtatatttacaagtgatgcctattgacattgttgcctttcgttttgtgnnnnnnn-aattaatcgttgcttat |
114 |
Q |
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| T |
17586083 |
gttttctcgtcatttttattttctttagtatatttacaagtgatgcctattgacattgttgccttttgttttgtgttttttttaattaatcgttgcttat |
17586182 |
T |
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| Q |
115 |
ttttctatgtatgacacaataattgtcgatcttggtttgcttcctcaattagtctctttacttttcggcggatactctccatctccttcctttg |
208 |
Q |
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| T |
17586183 |
ttttctatgtatgacacaataatcgtcgatcttggtttgcttcctccattagtctctttacttttcggcggatactctccatctccttcctttg |
17586276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 14740120 - 14739936
Alignment:
| Q |
16 |
gttttctcgtcatttt-cattttctttagtatatttacaagtgatgcctattgacattgttgcctttcgttttgtgnnnnnnnaattaatcgttgcttat |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| |||||| |||| || |||||| |||||||| |
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| T |
14740120 |
gttttctcgtcatttttcattttctttagtatatttagaaatgatgcctattgacattgt-gcctttatttttatgcttttt---ttaatcattgcttat |
14740025 |
T |
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| Q |
115 |
ttttctatgtatgacacaataattgtcgatcttggtttgcttcctcaattagtctctttacttttcggcggatactctccatctccttcctttg |
208 |
Q |
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|| || ||||| ||| || || || || ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14740024 |
tt--ctgtgtatcacaaaacaactg---atattggtttgcttcctccacaagtctctttacttttcagcggatactctccatctccttcctttg |
14739936 |
T |
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