View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_5 (Length: 469)
Name: NF19494_low_5
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 23716750 - 23716962
Alignment:
| Q |
1 |
attagaaaatgttattgtcaacgttgaatgactattttgactaatgaatttcacagttagatattattttaaaagtttgatgcattgatgaactatctag |
100 |
Q |
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| T |
23716750 |
attagaaaatgttattgtcaatgttgaatgactattttgactaatgaattgcacaattaaatattattttagaagtttgatgcattgatgaactatctag |
23716849 |
T |
|
| Q |
101 |
ctactcgttacatatcgggg-aaaaaattatgatttgtcctatattttaatgcattgcacaatagttttgtgttgtcaaaagtatatttgaacttctgtt |
199 |
Q |
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|||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23716850 |
ctactcgttatatattgggggaaaaaattatgatttgtcctatattttaatgcattgcacaatagttttgtgttgtcaaaagtatatttgaacttctgtt |
23716949 |
T |
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| Q |
200 |
gctgactttttct |
212 |
Q |
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||||||||||||| |
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| T |
23716950 |
gctgactttttct |
23716962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 312 - 455
Target Start/End: Original strand, 23717062 - 23717205
Alignment:
| Q |
312 |
ggtcaggtgcattgccttttaaattgtacacgagaatatatatcttaaagttagtaaagnnnnnnnngaatatctgccaaaaataaataaatcttaaagg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23717062 |
ggtcaggtgcattgccttttaaattgtacacgagaatatatatcttaaagttagtaaagaaaaaaaagaatatctgccaaaaataaataaatcttaaagg |
23717161 |
T |
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| Q |
412 |
atgactagttcatgaccacatggaccctggccacataaataaac |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23717162 |
atgactagttcatgaccacatggaccctggccacataaacaaac |
23717205 |
T |
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