View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_6 (Length: 439)
Name: NF19494_low_6
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 40633830 - 40633415
Alignment:
| Q |
1 |
gaatttttcaaggcattaactttagtagaatcattttctttttcaaatatatacctattataaaaactgcaactgcaatgaaaacagcttgaaggatctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633830 |
gaatttttcaaggcattaactttagtagaatcattttctttttcaaatatatacctattataaaaactgcaactgcaatgaaaacagcttgaaggatctg |
40633731 |
T |
|
| Q |
101 |
accagatgcatctgcaacataatcaagaagaaatgccaataatcctgctaataatgtccccaatcctctattcagccctttgcataaagttgcccctgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633730 |
accagatgcatctgcaacataatcaagaagaaatgccaataatcctgctaataatgtccccaatcctctattcagccctttgcataaagttgcccctgcc |
40633631 |
T |
|
| Q |
201 |
atnnnnnnnttacaaattaaagtcatcaataaactatgtgtctgtgttactatactgtttctatcatagttttgaattgcagccgaaaccacaattgttg |
300 |
Q |
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| T |
40633630 |
ataaaaaaattacaaattaaagtcatcaataaactatgtgtctgtgttactatactgtttctatcatagttttaaattgcagccaaaaccacaattgttg |
40633531 |
T |
|
| Q |
301 |
ctttattggtcgcatttatttatattttctcgccaaaatcatgggatgaaaaagtacaaaacaaaacaagactattttatacctgcagtgaactcgaaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40633530 |
ctttattggtcgcatttatttatattttctcgccaaaatcatgggatgaaaaagt-----acaaaacaagactattttatacctgcagtgaactcgaaaa |
40633436 |
T |
|
| Q |
401 |
ccactacgacagtcatgacag |
421 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
40633435 |
ccaccacgacagtcatgacag |
40633415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 40645475 - 40645322
Alignment:
| Q |
49 |
atatacctattataaaaactgcaactgcaatgaaaacagcttgaaggatctgaccagatgcatctgcaacataatcaagaagaaatgccaataatcctgc |
148 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||| |
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| T |
40645475 |
atatacctattataaaaactgcaaatgcaatgaaaacagcttgaaggatctgaccagattcatttgcaacataatcaagaagaaatgacaataaccctgc |
40645376 |
T |
|
| Q |
149 |
taataatgtccccaatcctctattcagccctttgcataaagttgcccctgccat |
202 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40645375 |
taataatgtccccaatcctctattcatccctttgcataaagttgcccctgccat |
40645322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 4782223 - 4782291
Alignment:
| Q |
131 |
aaatgccaataatcctgctaataatgtccccaatcctctattcagccctttgcataaagttgcccctgc |
199 |
Q |
| |
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||||||||||||||| ||||| | ||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
4782223 |
aaatgccaataatccagctaacagtgtccccaatcctctgttaagccctttgcataaagttgcccctgc |
4782291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 51850492 - 51850427
Alignment:
| Q |
132 |
aatgccaataatcctgctaataatgtccccaatcctctattcagccctttgcataaagttgcccct |
197 |
Q |
| |
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||||||||| |||||||||| || || |||||||||||||| || ||||||||||| ||| ||||| |
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| T |
51850492 |
aatgccaatgatcctgctaacaaagttcccaatcctctatttagtcctttgcataaggttccccct |
51850427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 51820980 - 51820900
Alignment:
| Q |
110 |
atctgcaacataatcaagaagaaatgccaataatcctgctaataatgtccccaatcctctattcagccctttgcataaagt |
190 |
Q |
| |
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|||||||| ||| |||| || ||||||||| ||||||||||| | || ||||||||||| || || ||||||| |||||| |
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| T |
51820980 |
atctgcaagatactcaataaaaaatgccaacaatcctgctaacgaagttcccaatcctctgtttagtcctttgcttaaagt |
51820900 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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