View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19494_low_7 (Length: 423)
Name: NF19494_low_7
Description: NF19494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19494_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 18464197 - 18464481
Alignment:
| Q |
15 |
cataggtaattgaaaacttaagtattgtagatatttctaaattgacatctagagcaaccaattttacctattaatcttagaatttcacaacataacattg |
114 |
Q |
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| T |
18464197 |
cataggtaattgaaa-cttaagtattgtagatatttctaaattgacatctagaggaaccaattttacctattaatcttaaaatttcacaacataacattg |
18464295 |
T |
|
| Q |
115 |
atcgaccataatcgattaaatggataggccaaactctatattactaaaggaaaaaggataaagttcatatgcattgattcttatgtaagctagttaatac |
214 |
Q |
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| T |
18464296 |
atcgaccataatcgattaaatggataggccaaactctatattactaaaggaaaaaggataaagttcatatgcattgattcttatgtaagctagttaatac |
18464395 |
T |
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| Q |
215 |
caatggtcacctattctaagttaattcacactaactaggcatgtcacactcccaaggcaacgaaagcattaataggagatgcctac |
300 |
Q |
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| T |
18464396 |
caatcgtcacctattctaagttaattcacactaactaggcatgtcactctcccagggcaacgaaagcattaataggagatgcctac |
18464481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 44810524 - 44810677
Alignment:
| Q |
15 |
cataggtaattgaaaacttaagtattgtagatatttctaaattgacatctagagcaaccaattttacctattaatcttagaatttcacaacataacattg |
114 |
Q |
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| T |
44810524 |
catagataattgaaa-cataagcatagtagatatttctaaattttcatctaaagaaaccactttcacctatgaatcttagaattttaccacataccctta |
44810622 |
T |
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| Q |
115 |
atcgaccataatcgattaaatggataggccaaactctatattactaaaggaaaaa |
169 |
Q |
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| T |
44810623 |
attgaccctagtggattaaatggatgggcctagctctatcttactagaggaaaaa |
44810677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 18467725 - 18467761
Alignment:
| Q |
368 |
agaggttaatattatatccctttttatttagagaggt |
404 |
Q |
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| T |
18467725 |
agaggttaatattatatccctttttatttagagaggt |
18467761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 12880113 - 12880253
Alignment:
| Q |
41 |
gtagatatttctaaattgacatctagagcaaccaattttacctattaatcttagaatttcacaacataacattgatcgaccataatcgattaaatggata |
140 |
Q |
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| T |
12880113 |
gtagatatttctaaattgtcatctaaatgaacaacttttacctatgaatattataatttcatcacgtacacttgattgaccctaatggattaaatgggta |
12880212 |
T |
|
| Q |
141 |
ggccaaactctatattactaaaggaaaaaggataaagttca |
181 |
Q |
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| T |
12880213 |
ggcttaaccctatcttactagaggaaacatgataaaattca |
12880253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 28571877 - 28571936
Alignment:
| Q |
128 |
gattaaatggataggccaaactctatattactaaaggaaaaaggataaagttcatatgca |
187 |
Q |
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| T |
28571877 |
gattaaatggataggcctaaccctatcttattaagggagaaagaataaagttcatatgca |
28571936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 11005130 - 11005070
Alignment:
| Q |
42 |
tagatatttctaaattgacatctagagcaaccaattttacctattaatcttagaatttcac |
102 |
Q |
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| T |
11005130 |
tagatattcctaaagtgtcatctaaaggaaccacttttacctatgaatcttagaatttcac |
11005070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 27820565 - 27820504
Alignment:
| Q |
41 |
gtagatatttctaaattgacatctagagcaaccaattttacctattaatcttagaatttcac |
102 |
Q |
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| T |
27820565 |
gtagaaatttctaaattgtcatctaaaagaaccacttttacctaaaaatcttagaatttcac |
27820504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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