View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_high_14 (Length: 359)
Name: NF19495_high_14
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 2 - 338
Target Start/End: Complemental strand, 46688432 - 46688096
Alignment:
| Q |
2 |
ttatacttagatatgattaatctccaagacattcttattgatttgcatgagtatatgatctttctcgttgtatttgtgcatgtaactttcccttgctcca |
101 |
Q |
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| T |
46688432 |
ttatccttagatatgattaatctccaagacattcttattgatttgcatgagtatatgatctttcccgttgtatgtgtgcatgtaactttcccttgctcca |
46688333 |
T |
|
| Q |
102 |
agaccttcttattaatgcatggcaatatgcaggatgattatttgtttcacctcctcatcaccagtctactctacgttgagaagcttgtcgatatccatga |
201 |
Q |
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| T |
46688332 |
agacattcttattaatgcatggcaatatgcaggatgattatttgtttcacctcctcatcaccagtctactctacgttgagaagcttgtcgatatccatga |
46688233 |
T |
|
| Q |
202 |
attgcttggccatgaacaagacagctctaggaaggactcggttgaaggtgaaaggaaacctgaagtttcgtctcaggatataaataaagttaattcaaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46688232 |
attgcttggccatgaacaagacagctctaggaaggactcggttgaaggtgaaaggaaacctgaagtttcgtctcaggatataaataaagttaattcaaat |
46688133 |
T |
|
| Q |
302 |
gaagaagctcctacagattcaactcatgcatggattg |
338 |
Q |
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| T |
46688132 |
gaagaagctcctacagattcaactcatgcatggattg |
46688096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 46705266 - 46705229
Alignment:
| Q |
301 |
tgaagaagctcctacagattcaactcatgcatggattg |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
46705266 |
tgaagaagctcctacagattcaactcatgcatggattg |
46705229 |
T |
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