View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_high_18 (Length: 326)
Name: NF19495_high_18
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 5849739 - 5850035
Alignment:
| Q |
20 |
cacaatgtcaactattttcattgattttcttttaagagtgtatagattcctaattacaaaaag-aattatactataatgaactaacttctttaaccacat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5849739 |
cacaatgtcaactattttcattgattttcttttaagagtgtacagattcctagttacaaaaaggaattatactataatgaactaacttctttaaccacat |
5849838 |
T |
|
| Q |
119 |
ccatttacaaaaatttgagaactcatgcttatttttcatttcattcaaacacatatggagcaactctgacttaattatttgataatgtactcgagttata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849839 |
ccatttacaaaaatttgagaactcatgcttatttttcatttcatccaaacacatatggagcaactctgacttaattatttgataatgtactcgagttata |
5849938 |
T |
|
| Q |
219 |
caatgtgttgctttgaggcaacgacataatcacattcattaattacctatttgatctatgtcatagagattcaactgtctaacacaatcaccttctt |
315 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849939 |
caatgtgttgctttcaggcaacgacataatcacattcattaattacctatttgatctatgtcatagagattcaactgtctaacacaatcaccttctt |
5850035 |
T |
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