View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_high_22 (Length: 307)
Name: NF19495_high_22
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 29722638 - 29722931
Alignment:
| Q |
1 |
ttatatcttataagcaacatgtctacaaaacaacataaaagccatcttagcaatatttacaagggtctatacaggcacatctcaaattccttctgttaac |
100 |
Q |
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| T |
29722638 |
ttatatcttataagcaacatgtctacaaaacaacataaa-gccatcttagcaatatttacaagggtctatacaggcacatctccaagtccttctgttaac |
29722736 |
T |
|
| Q |
101 |
caaattgtgactaaaacaataagtcagattccttggataatggacacagctacacaagagtcatgcatcaagttaaccaaactcttgaacnnnnnnnngg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| || |
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| T |
29722737 |
caaattgtgactaaaacaataagtcagattccttggataatggacacagccacacaa-agtcatgcatcaagttagccaaactcttgaacttttttttgg |
29722835 |
T |
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| Q |
201 |
ttcagtgcaataaaagtgaggaattgagtgagtcacagggcattattggtaaagtgagtgatgtannnnnnnaatctaacaactcggtatattcat |
296 |
Q |
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| T |
29722836 |
ttcagtgcaataaaagtgaggaattgagtgagtcacagggcattattggtaaagtgagtgatgtatttttttaatctaacaactcggtatattcat |
29722931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 29737544 - 29737322
Alignment:
| Q |
11 |
taagcaacatgtctacaaaacaacataaaagccatcttagcaatatttacaagggtctatacaggcacatctcaaattccttctgttaaccaaattgtga |
110 |
Q |
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||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||| | | ||||||||||||||| || |||||||||||||| ||||| |
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| T |
29737544 |
taagcaagatggctacaaaacaacataaaa-ccatcttagcaatattt-caaggatttg--caggcacatctcaaaatctttctgttaaccaaaatgtga |
29737449 |
T |
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| Q |
111 |
ctaaaacaataagtcagattccttggataatggacacagctacacaagagtcatgcatcaagttaaccaaactcttgaacnnnnnnnnggttcagtgcaa |
210 |
Q |
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|| || |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
29737448 |
cttaagcaataagtcagattcctttgataatggacacagccacacaagagtcatgcatcaagttagccaaactcttgaacttttttctggttcagtgcaa |
29737349 |
T |
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| Q |
211 |
taaaagtgaggaattgagtgagtcaca |
237 |
Q |
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| T |
29737348 |
tcaaagtgaggaattgagtgagtcaca |
29737322 |
T |
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