View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19495_high_3 (Length: 745)
Name: NF19495_high_3
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_high_3 |
 | |
|
| [»] scaffold0411 (1 HSPs) |
| | |
|
| [»] scaffold0147 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 18416609 - 18417251
Alignment:
| Q |
18 |
gtgtcataacacgatacaccgcctcagtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaata |
117 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18416609 |
gtgtcatagcacgatactccgcctcagtacttgaccttgcaacaacagttttctttttacttttccatgaaattaagtttcctcccattagaacacaata |
18416708 |
T |
|
| Q |
118 |
acctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaataatattggtatgtcctctg----aataaacaagtcttttt |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
18416709 |
acctgaagtagatcttctatcattcacatcacctgcccaatctgcatatgaatatccaacaatattggtatgtcctctgtatgaataaacaagtcctttt |
18416808 |
T |
|
| Q |
214 |
tcaggtgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacactaacaacaaacg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18416809 |
ccaggtgaccctttaatatacctcaagattcaaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacactaacatcaaacg |
18416908 |
T |
|
| Q |
314 |
aaatatctggtc--gtcatagtacgataattcagcttcctaaccaaccttctgtatctgcctgggtcaggatacaaatctccttgattttgtaaaagctt |
411 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18416909 |
aaatatctggtctagtcatagtaagataattcagcttcccaactaaacttctgtatcttcctgggtcaggatacaaatctccttgattctgtaaaagctt |
18417008 |
T |
|
| Q |
412 |
cacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaatgcct |
511 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
18417009 |
cacattggggttcataggagtatcaactggtttacaatcaagcatccctatctcttccaaaatatcaagaacgtattttctctgagaaatagcaatgcct |
18417108 |
T |
|
| Q |
512 |
tcttgggactgagctacttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttggaagttgctgaataaatgctgctttaggtctttaatgc |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18417109 |
tcttgggactgagctacttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttggaagttgctgaataaatgctgctttaggtctttaatgc |
18417208 |
T |
|
| Q |
612 |
cttcctgatcattaccagtaattacaatgtcatctacatatac |
654 |
Q |
| |
|
||||| |||||||||| |||| || ||||||||||||||||| |
|
|
| T |
18417209 |
cttccaaatcattaccaataataaccatgtcatctacatatac |
18417251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 66 - 655
Target Start/End: Complemental strand, 52964065 - 52963479
Alignment:
| Q |
66 |
tttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatc |
165 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
52964065 |
tttgctttttactttcccatgaaattaagtttcctcccattaaaacacaataacctgaactagatattctatcattaacatcacctgctcaatctgcatc |
52963966 |
T |
|
| Q |
166 |
tgaatatccaataatattggtatgtcc----tctgaataaacaagtcttttttcaggtgaccctttaatatacctcaagatccgaaccacgacattccaa |
261 |
Q |
| |
|
||||||||||| ||||||| |||| || |||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||| || ||| || || |
|
|
| T |
52963965 |
tgaatatccaacaatattgttatggcctctgtctgaataaataagtccttttccaggtgaccctttaatatacctcaagattcgaactacaacagtcgaa |
52963866 |
T |
|
| Q |
262 |
tggctatcacaaggtgagttcaaaaattgactcacaacactaacaacaaacgaaatatctggtc--gtcatagtacgataattcagcttcctaaccaacc |
359 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||| ||| ||| ||||||||||||||| ||| |||| |
|
|
| T |
52963865 |
tggctatcacaaggtgagttcagaaattgacttacaacactaacaacaaacaaagtatctggtctagtcgcagtgagataattcagcttcccaactaacc |
52963766 |
T |
|
| Q |
360 |
ttctgtatctgcctgggtcaggatacaaatctccttgattttgtaaaagcttcacattggggtccataggagtatcaactgg------tttacaatcaaa |
453 |
Q |
| |
|
| |||||||||||| || |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52963765 |
t----catctgcctgggttagaatacaactctacttgattcagtaaaagcttcacattggggtccataggagtatcaactggtttacatttacaatcaag |
52963670 |
T |
|
| Q |
454 |
catccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaatgccttcttgggactgagctacttcaatcccaagaaaataacgcaat |
553 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
52963669 |
catccttgtctcttccaaa-----------atattttctctgagaagtaacaatgccttcttgggactgagctacttcaatctcaataaaataacgcaat |
52963581 |
T |
|
| Q |
554 |
cgacctaaatcttttgtttggaagttgctgaataaatgctgctttaggtctttaatgccttcctgatcattaccagtaattacaatgtcatctacatata |
653 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
52963580 |
tgacctaaatcttttgtttgaaagtggctgaataaatgctgctttaggtctttaatgcgttcttgatcattaccggtaataacaatatcatctacatata |
52963481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 259 - 654
Target Start/End: Original strand, 19937257 - 19937652
Alignment:
| Q |
259 |
caatggctatcacaaggtgagttcaaaaattgactcacaacactaacaacaaacgaaatatctggtc--gtcatagtacgataattcagcttcctaacca |
356 |
Q |
| |
|
|||||| ||||| ||||||| || | ||||||||||||||||||||||||||| |||||| |||| |||||||| | | |||||| ||| ||| | |
|
|
| T |
19937257 |
caatggttatcaaaaggtgaatttagaaattgactcacaacactaacaacaaaa-aaatatatggttttgtcatagtgaggtgattcagtttctcaacta |
19937355 |
T |
|
| Q |
357 |
accttctgtatctgcctgggtcaggatacaaatctccttgattttgtaaaagcttcacattggggtccataggagtatcaactggtttacaatcaaacat |
456 |
Q |
| |
|
||||||||||| ||| ||||| |||| || | ||||| || ||||||||||||||| || |||||||||||||| ||||||||||||| ||| |
|
|
| T |
19937356 |
accttctgtatttgcatgggttcagatatggctcccgctgattccatagaagcttcacattgggatctataggagtatcaaccggtttacaatcaagcat |
19937455 |
T |
|
| Q |
457 |
ccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaatgccttcttgggactga-gctacttcaatcccaagaaaataacgcaatcg |
555 |
Q |
| |
|
|| ||| |||||||| |||||||||||||||||||| ||| |||| ||| | | | |||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
19937456 |
ccttgtttcttccaagatatcaagaacatattttctt--agagatagcaatatccgccggtgacttaagctacttcaatcccaagaaaagaacgcaatcg |
19937553 |
T |
|
| Q |
556 |
acctaaatcttttgtttggaagttgctgaataaatgctgctttaggtctttaatgccttcctgatcattaccagtaattacaatgtcatctacatatac |
654 |
Q |
| |
|
|||||||||||| || || |||| | ||| |||||| ||||||||||||||||||||||| ||||||| || |||||| ||||| ||||||| |||||| |
|
|
| T |
19937554 |
acctaaatctttggtatgaaagtggttgagtaaatgttgctttaggtctttaatgccttcttgatcatcacaagtaataacaatatcatctaaatatac |
19937652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 19936787 - 19937016
Alignment:
| Q |
22 |
cataacacgatacaccgcctcagtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacct |
121 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||| || | ||||||||||| | |
|
|
| T |
19936787 |
cataacacgatactcggcctctctacttgaccttgcaacaacaattttctttttacctttccatgaaa-caagtttcctggaatcaaaacacaataacat |
19936885 |
T |
|
| Q |
122 |
aaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaataatattggtatgtcc----tctgaataaacaagtcttttttcag |
217 |
Q |
| |
|
||||| | | ||||||||||| ||||||||||| || ||||||||||| ||| ||| | |||||| || | ||||||||||||| || | || |
|
|
| T |
19936886 |
gaagtaaacatcctatcattcacgtcacctgcccagtcaacatctgaatattcaacaatttcggtatgaccaatattagaataaacaagtcattctccaa |
19936985 |
T |
|
| Q |
218 |
gtgaccctttaatatacctcaagatccgaac |
248 |
Q |
| |
|
| |||||||||||| |||||||||||||||| |
|
|
| T |
19936986 |
gcgaccctttaatacacctcaagatccgaac |
19937016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 548
Target Start/End: Complemental strand, 36428123 - 36427994
Alignment:
| Q |
419 |
gggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaatgccttcttggg |
518 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| | || ||||||||||| |||| ||||||||||||| | |||||||| || | | | || | |
|
|
| T |
36428123 |
gggtccatactagtatcaattggtttacaatcaagcttcttcgtctcttccaagatatagagaacatattttcacagagaaatagcaacggttgcgtgcg |
36428024 |
T |
|
| Q |
519 |
actgagctacttcaatcccaagaaaataac |
548 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
36428023 |
actgagtaacttcaatcccaagaaaataac |
36427994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 22 - 654
Target Start/End: Original strand, 37916988 - 37917626
Alignment:
| Q |
22 |
cataacacgatacaccgcctcagtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacct |
121 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37916988 |
cataacacgatactccacctcagtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccatcagaacacaataacct |
37917087 |
T |
|
| Q |
122 |
aaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaataatattggtatgtc----ctctgaataaacaagtcttttttcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| |||| ||| |
|
|
| T |
37917088 |
gaagtagatcttctatcattcacatcatctgcccaatctgcatctgaatatccaacaatattgatacgtcttctgtctgaataaacaagtccttttccag |
37917187 |
T |
|
| Q |
218 |
gtgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacactaacaacaaacgaaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37917188 |
gtgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacactaacagcaaacgaaat |
37917287 |
T |
|
| Q |
318 |
atctggtc--gtcatagtacgataattcagcttcctaaccaaccttctgtatctgcctgggtcaggatacaaatctccttgattttgtaaaagcttcaca |
415 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37917288 |
atctggtctagtcatagtaagataattcagtttcccaactaaccttctgtatctgcttgggtcaggatacaaatctccttgattctgtaaaagcttcaca |
37917387 |
T |
|
| Q |
416 |
ttggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaatgccttctt |
515 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
37917388 |
ttggggtccatatgagtatcaactgatttacaatcaagcatcactgtctcttccaaaatatcaagaacgtattttctctgagaaatagtaatgccttctt |
37917487 |
T |
|
| Q |
516 |
gggactgagctacttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttggaagttgctgaataaatgctgctttaggtctttaatgccttc |
615 |
Q |
| |
|
|| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37917488 |
ggaactgagctacttcaatcccaataatataacgcaatcgacctaaatcttttgtttggaagttgctgaataaatgctgctttaggtctttaatgccttc |
37917587 |
T |
|
| Q |
616 |
ctgatcattaccagtaattacaatgtcatctacatatac |
654 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37917588 |
ctgatcattaccagtaataacaatgtcatctacatatac |
37917626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 83 - 654
Target Start/End: Complemental strand, 33834704 - 33834132
Alignment:
| Q |
83 |
catgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaataatat |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33834704 |
catgaaattaagtttcctcccattagaacacaataacctgaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaacaatat |
33834605 |
T |
|
| Q |
183 |
tggtatgtcctctg----aataaacaagtcttttttcaggtgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtga |
278 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33834604 |
tggtatgtcctctgtcggaataaacaagtccttttccaggcgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtga |
33834505 |
T |
|
| Q |
279 |
gttcaaaaattgactcacaacactaacaacaaacgaaatatctggtc--gtcatagtacgataattcagcttcctaaccaaccttctgtatctgcctggg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
33834504 |
gttcaaaaattgactcacaacactaacagcaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaacctt----atctgcctggg |
33834409 |
T |
|
| Q |
377 |
tcaggatacaaatctccttgattttgtaaaagcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatat |
476 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33834408 |
tcaggatacaaatctccttgattctgtaaaagcttcacattggggtccataggagtatcaactggtttacaatcaagcatccctgtctcttccaaaatat |
33834309 |
T |
|
| Q |
477 |
caagaacatattttctctaagaaatagtaatgccttcttgggactgagctacttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttggaa |
576 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
33834308 |
caagaacgtattttctctgagaaatagcaatgccttcttgggactgagctacttcaatcccaagaaaataacg-tattgacctaaatcttttgtttggaa |
33834210 |
T |
|
| Q |
577 |
gttgctgaataaatgctgctttaggtctttaatgccttcctgatcattaccagtaattacaatgtcatctacatatac |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33834209 |
gttgctgaataaatgctgctttaggtctttaatgccttcctgatcattaccagtaataacaatgtcatctacatatac |
33834132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 112 - 653
Target Start/End: Original strand, 7566644 - 7567183
Alignment:
| Q |
112 |
acaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaataatattggtatgtcctctg----aataaacaagt |
207 |
Q |
| |
|
||||||| || ||||||||||||| |||||||||||| |||||||| ||||| ||||||||||| | |||| |||| |||||| ||||| || || |
|
|
| T |
7566644 |
acaataatctgaagtagatcttcttacattcacatcacttgcccaatatgcatatgaatatccaacagtattaatatggcctctgtctgaataagcaggt |
7566743 |
T |
|
| Q |
208 |
c-ttttttcaggtgaccctttaatatacctcaagatccgaaccac---gacattccaatggctatcacaaggtgagttcaaaaattgactcacaacacta |
303 |
Q |
| |
|
| |||||||| ||||||||||| |||||||| ||||| |||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
7566744 |
ccttttttcaagtgaccctttac-atacctcatgatcctaaccaccacgacattccaatggctatcacaaggtgagttcagaagttgactcacaacacta |
7566842 |
T |
|
| Q |
304 |
acaacaaacgaaatatctggtc--gtcatagtacgataattcagcttcctaaccaaccttctgtatctgcct-gggtcaggatacaaatctccttgattt |
400 |
Q |
| |
|
|| |||||||||||||||||| |||||||| ||||||||||| ||| || |||||| |||||| ||||| |||| ||||||| ||||||| |
|
|
| T |
7566843 |
ccatcaaacgaaatatctggtctagtcatagtgagataattcagcctcccaatcaacctcctgtatgtgccttgggttaggatacggctctcctt----- |
7566937 |
T |
|
| Q |
401 |
tgtaaaagcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaa |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||| |||| ||||| ||||||||| | ||||| ||||| ||||||| || | ||| |
|
|
| T |
7566938 |
---aaaagcttcacattggggtccatgggagtatcaactagtttacactcaagcatcc-tgtctcttcatagatatcgagaacgtattttccctgaaaaa |
7567033 |
T |
|
| Q |
501 |
tagtaatgccttcttgggactgagctacttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttggaagttgctgaataaatgctgctttag |
600 |
Q |
| |
|
||| |||||||||||||| ||||||||| |||||| |||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
7567034 |
tagcaatgccttcttggggctgagctac---aatccctagaaaataacgcaaccgacctatatcttttgtttgaaagtggctgaataaatgctgatttag |
7567130 |
T |
|
| Q |
601 |
gtctttaatgccttcctgatcattaccagtaattacaatgtcatctacatata |
653 |
Q |
| |
|
||||||||||||||| ||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
7567131 |
gtctttaatgccttcttgatctataccgataataacaatgtcatctacatata |
7567183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 336 - 503
Target Start/End: Complemental strand, 27519198 - 27519031
Alignment:
| Q |
336 |
gataattcagcttcctaaccaaccttctgtatctgcctgggtcaggatacaaatctccttgattttgtaaaagcttcacattggggtccataggagtatc |
435 |
Q |
| |
|
|||||||||| ||| ||| | ||| ||||||||| |||| ||||||||| | ||||| ||||||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
27519198 |
gataattcagtttcacaactagcctcctgtatctgtctggatcaggataccactctccatgattttgtaaaagcttcacattatggtccaaaggagtagc |
27519099 |
T |
|
| Q |
436 |
aactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatag |
503 |
Q |
| |
|
||||||||||||||| | ||||| ||| ||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27519098 |
aactggtttacaatcgagcatccatgtttctcccaagatatcaagaacatattttctctaagaaatag |
27519031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 395 - 502
Target Start/End: Original strand, 27464370 - 27464477
Alignment:
| Q |
395 |
tgattttgtaaaagcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctct |
494 |
Q |
| |
|
||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||| | ||||| ||| |||||||| |||| || |||||||||||||| |
|
|
| T |
27464370 |
tgattctgtaaaggcttcacatcagggttcataggagtatcaattggtttacaatcgagcatccttgtttcttccaagatatgaaaaacatattttctct |
27464469 |
T |
|
| Q |
495 |
aagaaata |
502 |
Q |
| |
|
||||||| |
|
|
| T |
27464470 |
gagaaata |
27464477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 300
Target Start/End: Original strand, 23298610 - 23298869
Alignment:
| Q |
41 |
tcagtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcat |
140 |
Q |
| |
|
|||| ||| ||||||| ||||||| ||||||| || ||||||||||||||||| || | || ||||||| |||||||| | | |||| ||| |||| |
|
|
| T |
23298610 |
tcagcactcgaccttgtaacaacaatttgcttcttgcttttccatgaaattaaattgc-tctaattagaatacaataacatgtaataga-ctt--atcac |
23298705 |
T |
|
| Q |
141 |
tcacatcacctgcccaatctgcatctgaatatccaataatattggtatgtcctc----tgaataaacaagtcttttttcaggtgaccctttaatatacct |
236 |
Q |
| |
|
| |||||||||||||||| |||||||||||||| ||||||| ||| |||| || |||||||| | ||| ||||| || |||||||||||| |
|
|
| T |
23298706 |
ttacatcacctgcccaattattatctgaatatccaacaatattgctattacctcattctgtataaacaaaccatttcctaggtggccttttaatatacct |
23298805 |
T |
|
| Q |
237 |
caagatccgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaaca |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| |||| | |||||||||| ||||| |
|
|
| T |
23298806 |
taagatccgaaccactgcattccaatggctattacaagcccagtttagaaattgactcgcaaca |
23298869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 480
Target Start/End: Complemental strand, 37076545 - 37076471
Alignment:
| Q |
406 |
aagcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaag |
480 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| | | ||||| || |||||||||||||| |
|
|
| T |
37076545 |
aagcttcacattaggatccataggagtatcaactggtttacaatctataagacctgtttcgtccaaaatatcaag |
37076471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 397 - 502
Target Start/End: Original strand, 23298951 - 23299056
Alignment:
| Q |
397 |
attttgtaaaagcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaa |
496 |
Q |
| |
|
|||| ||| ||| |||||||| || |||||||||| |||||||| |||||||||| ||| | ||||| ||||| || |||||||||||||||| || | |
|
|
| T |
23298951 |
atttggtagaagtttcacattaggttccataggagcatcaactgatttacaatcaggcattcttgtcttctccaagatgtcaagaacatattttccctta |
23299050 |
T |
|
| Q |
497 |
gaaata |
502 |
Q |
| |
|
|||||| |
|
|
| T |
23299051 |
gaaata |
23299056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 50962674 - 50962527
Alignment:
| Q |
29 |
cgatacaccgcctcagtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtag |
128 |
Q |
| |
|
|||||| | ||||| |||||||| | ||||| || ||||||||||| || ||||||||||| | ||||| |||| | || ||||||||| |||||| |
|
|
| T |
50962674 |
cgatactcggcctctgtacttgatcgagcaacgactgtttgctttttgctcttccatgaaatgagatttccacccacaaaaatacaataaccagaagtag |
50962575 |
T |
|
| Q |
129 |
atcttctatcattcacatcacctgcccaatctgcatctgaatatccaa |
176 |
Q |
| |
|
| | ||||||| | |||| ||||||||||| ||||||||||| |||| |
|
|
| T |
50962574 |
accgtctatcacttgcatctcctgcccaatcggcatctgaatacccaa |
50962527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 33834745 - 33834706
Alignment:
| Q |
22 |
cataacacgatacaccgcctcagtacttgaccttgcaaca |
61 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
33834745 |
catagcacgatactccgcctcagtacttgaccttgcaaca |
33834706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 549
Target Start/End: Original strand, 46594280 - 46594407
Alignment:
| Q |
422 |
tccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaatgccttcttgggact |
521 |
Q |
| |
|
||||||||||| || |||||||| ||||| | | |||||||| || ||||||||||| |||||||||||| ||| |||| ||||||| | || | |
|
|
| T |
46594280 |
tccataggagtgtcgactggtttgcaatctataagacctgtctcctctaaaatatcaagggcatattttctctgagagatagcaatgcctgactttgatt |
46594379 |
T |
|
| Q |
522 |
gagctacttcaatcccaagaaaataacg |
549 |
Q |
| |
|
|||| || |||||||||||||| ||||| |
|
|
| T |
46594380 |
gagccacctcaatcccaagaaagtaacg |
46594407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 527 - 573
Target Start/End: Original strand, 3456800 - 3456846
Alignment:
| Q |
527 |
acttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttg |
573 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
3456800 |
acttcaattccaaaaaaataatgcaaccgacctaaatcttttgtttg |
3456846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 549
Target Start/End: Original strand, 22503158 - 22503300
Alignment:
| Q |
407 |
agcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaa |
506 |
Q |
| |
|
||||||||||| | ||||||||||| || |||||||| ||||| | | |||||||| || ||||||||||| |||||||| ||| ||| |||| || |
|
|
| T |
22503158 |
agcttcacattatgatccataggagtgtcgactggtttgcaatctataagacctgtctcctctaaaatatcaagggcatattttatctgagagatagcaa |
22503257 |
T |
|
| Q |
507 |
tgccttcttgggactgagctacttcaatcccaagaaaataacg |
549 |
Q |
| |
|
||||| | || ||||| || |||||||||||||| ||||| |
|
|
| T |
22503258 |
tgcctgactttgattgagccacctcaatcccaagaaagtaacg |
22503300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 37495273 - 37495168
Alignment:
| Q |
71 |
tttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaat |
170 |
Q |
| |
|
||||| || ||||||||||| | ||||| |||| | || ||||||||| ||||||| | ||||||| || |||| ||||||||||| |||||||||| |
|
|
| T |
37495273 |
tttttgctcttccatgaaatgagatttccacccacaaaaatacaataaccagaagtagaccgtctatcactcgcatctcctgcccaatcggcatctgaat |
37495174 |
T |
|
| Q |
171 |
atccaa |
176 |
Q |
| |
|
| |||| |
|
|
| T |
37495173 |
acccaa |
37495168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 654
Target Start/End: Complemental strand, 37000809 - 37000170
Alignment:
| Q |
17 |
agtgtcataacacgatacaccgcctcagtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaat |
116 |
Q |
| |
|
|||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37000809 |
agtgccatagcacgatactccgcctctgtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaat |
37000710 |
T |
|
| Q |
117 |
aacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaataatattggtatgtcctctg----aataaacaagtctttt |
212 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||| ||| |
|
|
| T |
37000709 |
aacg--aagtggatcttctatcattcacatcacctgcccaatttgcatctgaatatccaacaatattggtatggcctctgtctgaataaacaagtccttt |
37000612 |
T |
|
| Q |
213 |
ttcaggtgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacactaacaacaaac |
312 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||| |
|
|
| T |
37000611 |
ttcaggcgaccctttaatataccgcaagatccgaaccacagcattccaatggctatcacaaggtgagataaaaaattgactca--acactaaaaacaaac |
37000514 |
T |
|
| Q |
313 |
gaaatatctggtc--gtcatagtacgataattcagcttcctaaccaaccttctgtatctgcctgggtcaggatacaaatctccttgattttgtaaaagct |
410 |
Q |
| |
|
||||||| || || |||||| | ||||||| ||| ||| ||| |||| |||||||| | ||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
37000513 |
gaaatatatgctctagtcatattgagataatttagcctcccaacttacctcctgtatcttcttgggttaggatacaaatctccttggttccgtaaaagct |
37000414 |
T |
|
| Q |
411 |
tcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaatgcc |
510 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||||| || ||||| ||| |||||||| ||||| | ||| |||||||||| ||||||| |||||| |
|
|
| T |
37000413 |
tcacattggggtccacatgagtatcatctggtttacaattaagcatccatgtttcttccaagatatcgaaaacgtattttctctgagaaataacaatgcc |
37000314 |
T |
|
| Q |
511 |
ttcttgggactgagctacttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttggaagttgctgaataaatgctgctttaggtctttaatg |
610 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||| |
|
|
| T |
37000313 |
tacttgggaccaagctacttcaatcccaagaaaataacacaatcgacctaaatcttttgtttgaaagtggctgaataaacgttgctttaggtctttaatg |
37000214 |
T |
|
| Q |
611 |
ccttcctgatcattaccagtaattacaatgtcatctacatatac |
654 |
Q |
| |
|
||||| |||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
37000213 |
ccttcttgatcattgccagtgataacaatgtcatctacatatac |
37000170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 43736547 - 43736443
Alignment:
| Q |
407 |
agcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaa |
506 |
Q |
| |
|
||||||||||| || ||||||||||| || |||||||| ||||| | | | |||||| || ||||||||||| |||||||||||| ||| |||| || |
|
|
| T |
43736547 |
agcttcacattaggatccataggagtgtcgactggtttgcaatctataagacttgtctcctctaaaatatcaagggcatattttctctgagagatagcaa |
43736448 |
T |
|
| Q |
507 |
tgcct |
511 |
Q |
| |
|
||||| |
|
|
| T |
43736447 |
tgcct |
43736443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 43736904 - 43736784
Alignment:
| Q |
56 |
gcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgccc |
155 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| | ||||| |||| | || |||||||| ||||||| | ||||||| || |||| ||||||| |
|
|
| T |
43736904 |
gcaacgactgtttgctttttgctcttccatgaaatgagatttccacccacaaaaatacaataactagaagtagaccgtctatcactcgcatctcctgccc |
43736805 |
T |
|
| Q |
156 |
aatctgcatctgaatatccaa |
176 |
Q |
| |
|
|||| ||||||||||| |||| |
|
|
| T |
43736804 |
aatcggcatctgaatacccaa |
43736784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 104 - 653
Target Start/End: Complemental strand, 8984707 - 8984160
Alignment:
| Q |
104 |
attagaacacaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaataatattggtatgtcctctg----aat |
199 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| |||||||||||| |||||||| ||||| ||||||||||| | ||||| |||| |||||| ||| |
|
|
| T |
8984707 |
attagaaaacaataatctgaagtagatcttcttacattcacatcacttgcccaatatgcatatgaatatccaacagtattgatatggcctctgtctgaat |
8984608 |
T |
|
| Q |
200 |
aaacaagtc-ttttttcaggtgaccctttaatatacctcaagatccgaaccac---gacattccaatggctatcacaaggtgagttcaaaaattgactca |
295 |
Q |
| |
|
|| || ||| |||||||| ||||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
8984607 |
aagcaggtccttttttcaagtgaccctttac-atatctcaagatcctaaccaccacgacattccaatggctatcacaaggtgagttcagaagttgactca |
8984509 |
T |
|
| Q |
296 |
caacactaacaacaaacgaaatatctggtc--gtcatagtacgataattcagcttcctaaccaaccttctgtatctgcct-gggtcaggatacaaatctc |
392 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||| ||||||||||| ||| || |||||| |||||| ||||| |||||||||||| |||| |
|
|
| T |
8984508 |
caacactaccatcaaacgaaatatctggtctagtcatagtgagataattcagcctcccaatcaacctcctgtatgtgccttgggtcaggatacggctctc |
8984409 |
T |
|
| Q |
393 |
cttgattttgtaaaagcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttct |
492 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||| ||||||||| | ||||| ||||| ||||||| |
|
|
| T |
8984408 |
ctt--------aaaagcttcacattggggtctataggagtatcaactagtttacactcaagcatcc-tgtctcttcatagatatcgagaacgtattttcc |
8984318 |
T |
|
| Q |
493 |
ctaagaaatagtaatgccttcttgggactgagctacttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttggaagttgctgaataaatgc |
592 |
Q |
| |
|
|| | |||||| |||||||||||||| ||||||||| |||||| ||||||||||| |||||||||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
8984317 |
ctgaaaaatagcaatgccttcttggggctgagctac---aatccctagaaaataacgtaatcgacctatatcttttgtttgaaagtggctgaataaatgc |
8984221 |
T |
|
| Q |
593 |
tgctttaggtctttaatgccttcctgatcattaccagtaattacaatgtcatctacatata |
653 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
8984220 |
tcctttaggtctttaatgccttcttgaccattaccaataataacaatgtcatctacatata |
8984160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 42357802 - 42357846
Alignment:
| Q |
406 |
aagcttcacattggggtccataggagtatcaactggtttacaatc |
450 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
42357802 |
aagcttcacattaggatccataggagtatcaactggtttacaatc |
42357846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 22120292 - 22120196
Alignment:
| Q |
80 |
ttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaa |
176 |
Q |
| |
|
||||||||||| | ||||| |||| | || ||||||||| |||||| | ||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
22120292 |
ttccatgaaatgagatttccacccacaaaaatacaataaccaggagtagaccatctatcactcacatcacctgcccaatcggcatctgaatacccaa |
22120196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 40542707 - 40542803
Alignment:
| Q |
80 |
ttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaa |
176 |
Q |
| |
|
||||||||||| | ||||| |||| | || ||||||||| |||||| | ||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
40542707 |
ttccatgaaatgagatttccacccacaaaaatacaataaccaggagtagaccatctatcactcacatcacctgcccaatcggcatctgaatacccaa |
40542803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 549
Target Start/End: Original strand, 40543270 - 40543412
Alignment:
| Q |
407 |
agcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaa |
506 |
Q |
| |
|
||||||||||| || ||||||||||| || | ||||| ||||| | | |||||||| || ||||||||||| |||||||||||| ||| |||| || |
|
|
| T |
40543270 |
agcttcacattaggatccataggagtgtcggccggtttgcaatctataagacctgtctcctctaaaatatcaagggcatattttctctgagagatagcaa |
40543369 |
T |
|
| Q |
507 |
tgccttcttgggactgagctacttcaatcccaagaaaataacg |
549 |
Q |
| |
|
||||| | || ||||| || |||||||||||||| ||||| |
|
|
| T |
40543370 |
tgcctgactttgattgagccacctcaatcccaagaaagtaacg |
40543412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 45182962 - 45183036
Alignment:
| Q |
406 |
aagcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaag |
480 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||| |||||||||| | | ||||| || |||||||||||||| |
|
|
| T |
45182962 |
aagcttcacattaggatccataagagtatcaactagtttacaatctataagacctgtttcctccaaaatatcaag |
45183036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 7e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 44 - 623
Target Start/End: Original strand, 32331300 - 32331869
Alignment:
| Q |
44 |
gtacttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattca |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | || |||||||| | | || |||||||||||| | | |
|
|
| T |
32331300 |
gtacttgaccttgcaacaacagtttgctttttacttttccatgagattaagtttcctccaatcaaaatacaataacttgatgttgatcttctatcaataa |
32331399 |
T |
|
| Q |
144 |
catcacctgcccaatctgcatctgaatatccaataatattggtatgtcctctg----aataaacaagtcttttttcaggtgaccctttaatatacctcaa |
239 |
Q |
| |
|
||||| || |||||||||||| ||||||| ||| ||| |||||||| |||||| |||||||||||| ||| || |||||| || |
|
|
| T |
32331400 |
catcatcttcccaatctgcatttgaatatacaacaatgttggtatggcctctgtcgaaataaacaagtcatttcccaagtgaccttt------------- |
32331486 |
T |
|
| Q |
240 |
gatccgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacactaacaacaaacgaaatatctggtc--gtcatagtacga |
337 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | |||| || ||||||||| |||| ||||||||||| |||| ||||||||| || |
|
|
| T |
32331487 |
---ccgaaccacgacattccaattactatcacaaggtgagtttataaatagattcacaacaccaacagaaaacgaaatatacggtctggtcatagtaaga |
32331583 |
T |
|
| Q |
338 |
taattcagcttcctaaccaaccttctgtatctgcctgggtcaggatacaaatctccttgattttgtaaaagcttcacattggggtccataggagtatcaa |
437 |
Q |
| |
|
|||||| | |||| ||| ||||| | ||||||||| ||| |||||| ||||||||||| |||| |||||||||||| || || || | |||||||| |
|
|
| T |
32331584 |
taattcggtttcccaactaacctcatctatctgcctaggttaggatatggctctccttgattatgtagaagcttcacattaggttctatggaagtatcaa |
32331683 |
T |
|
| Q |
438 |
ctggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaatgccttcttgggactgagctacttcaatccc |
537 |
Q |
| |
|
|||| ||| |||||| |||| |||||||| ||| |||||||||||||||||||||| |||||||| |||| |||| || |||||||| ||||||||||| |
|
|
| T |
32331684 |
ctggattagaatcaagaatccatgtctctttcaagatatcaagaacatattttctctgagaaatagcaatgtcttcatgagactgagcaacttcaatccc |
32331783 |
T |
|
| Q |
538 |
aagaaaataacgcaatcgacctaaatcttttgtttggaagttgctgaataaatgctgctttaggtctttaatgccttcctgatcat |
623 |
Q |
| |
|
||||||||| | |||| ||| ||||||| || | |||| | ||||||| || | |||||||||||||||| |||| ||||||| |
|
|
| T |
32331784 |
aagaaaataccacaattgactgaaatcttgagtgagaaagtggttgaataagtgttactttaggtctttaatgtcttcttgatcat |
32331869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 509
Target Start/End: Complemental strand, 21026 - 20924
Alignment:
| Q |
407 |
agcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaa |
506 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||||| ||||| | | |||||||| || ||||||||||| ||||||||||||||| |||| || |
|
|
| T |
21026 |
agcttcacattaggatccataggagtgtcggctggtttgcaatctataagacctgtctcctctaaaatatcaagggtatattttctctaagagatagcaa |
20927 |
T |
|
| Q |
507 |
tgc |
509 |
Q |
| |
|
||| |
|
|
| T |
20926 |
tgc |
20924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 4490258 - 4490183
Alignment:
| Q |
112 |
acaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaataatattggtatg |
189 |
Q |
| |
|
|||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
4490258 |
acaataacctcaagtggacattctatcattcact--acctgcccaatctgcatctgaatattaaacaatattgatatg |
4490183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 77 - 301
Target Start/End: Original strand, 49812730 - 49812955
Alignment:
| Q |
77 |
cttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgcccaatctgcatctgaatatccaa |
176 |
Q |
| |
|
|||||| |||||||||| ||||| || || | |||||| |||||| |||| |||||| ||||| | |||||||||||||||||| || ||||||||||| |
|
|
| T |
49812730 |
cttttcaatgaaattaaatttccaccaatcaaaacacagtaacctgaagttgatcttttatcacttacatcacctgcccaatctatatatgaatatccaa |
49812829 |
T |
|
| Q |
177 |
taatattggtatgtc-ctctgaataaacaagtcttttttcaggtgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaagg |
275 |
Q |
| |
|
|||||||| | | | | || | ||||||| ||||| |||||||| ||||||||| ||||||||||||||||| | || |||||||||| ||||| |
|
|
| T |
49812830 |
caatattggcacgactatttgtacaaacaagccttttcctaggtgaccttttaatataactcaagatccgaaccactgcgtttcaatggctataacaagt |
49812929 |
T |
|
| Q |
276 |
tgagttcaaaaattgactcacaacac |
301 |
Q |
| |
|
||||| || ||||||||| |||||| |
|
|
| T |
49812930 |
cgagtttaacaattgactctcaacac |
49812955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 567
Target Start/End: Original strand, 35001310 - 35001481
Alignment:
| Q |
395 |
tgattttgtaaaagcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctct |
494 |
Q |
| |
|
|||||| ||| ||| ||||||||| | |||||||||||||| || ||||||| |||| |||| | ||||||| |||||| |||| |||||| | ||| | |
|
|
| T |
35001310 |
tgatttggtagaagtttcacattgtgatccataggagtatc-gcttgtttacagtcaagcatcacagtctctttcaaaatgtcaaaaacataatatcttt |
35001408 |
T |
|
| Q |
495 |
aagaaatagtaatgccttcttgggactgagctacttcaatcccaagaaaataacgcaatcgacctaaatcttt |
567 |
Q |
| |
|
||||||| ||||||||| | || |||||| ||||||||| |||||||| | |||||| | |||||||||| |
|
|
| T |
35001409 |
gagaaataacaatgccttcctatgagtgagcttcttcaatcctaagaaaatgatgcaatcaatctaaatcttt |
35001481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 35000925 - 35001007
Alignment:
| Q |
211 |
ttttcaggtgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgact |
293 |
Q |
| |
|
|||| ||| ||||||||| |||||||| ||||| |||| || ||||||||| || ||||||||||||||| | ||||||||| |
|
|
| T |
35000925 |
tttttaggcgaccctttagtatacctctagatctgaactacttcattccaattgccatcacaaggtgagttaagaaattgact |
35001007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 36500334 - 36500290
Alignment:
| Q |
406 |
aagcttcacattggggtccataggagtatcaactggtttacaatc |
450 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
36500334 |
aagctttacattaggatccataggagtatcaactggtttacaatc |
36500290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 654
Target Start/End: Original strand, 30781710 - 30781801
Alignment:
| Q |
563 |
tcttttgtttggaagttgctgaataaatgctgctttaggtctttaatgccttcctgatcattaccagtaattacaatgtcatctacatatac |
654 |
Q |
| |
|
||||||||||| |||| | |||||||||| || ||||| | |||||||||||| |||||||||| |||||| ||||| |||| ||||||||| |
|
|
| T |
30781710 |
tcttttgtttgaaagtggttgaataaatgttgttttagatttttaatgccttcttgatcattactagtaataacaatatcatttacatatac |
30781801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 34768450 - 34768570
Alignment:
| Q |
56 |
gcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgccc |
155 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| | ||||| |||| | || |||||||| ||||||| | ||||||| || |||| ||||||| |
|
|
| T |
34768450 |
gcaacgactgtttgctttttgctcttccatgaaatgagatttccacccacaaaaatacaataacaagaagtagaccgtctatcactcgcatctcctgccc |
34768549 |
T |
|
| Q |
156 |
aatctgcatctgaatatccaa |
176 |
Q |
| |
|
|||| ||||||||||| |||| |
|
|
| T |
34768550 |
aatcggcatctgaatacccaa |
34768570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 38505863 - 38505759
Alignment:
| Q |
407 |
agcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaa |
506 |
Q |
| |
|
||||||||||| || ||||||||||| || |||||||| ||||| | | | |||||| || ||||||||||| |||||||||||| ||| |||| || |
|
|
| T |
38505863 |
agcttcacattaggatccataggagtgtcgactggtttgcaatctataagacttgtctcctctaaaatatcaagggcatattttctctgagagatagcaa |
38505764 |
T |
|
| Q |
507 |
tgcct |
511 |
Q |
| |
|
||||| |
|
|
| T |
38505763 |
tgcct |
38505759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 38506220 - 38506100
Alignment:
| Q |
56 |
gcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgccc |
155 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| | ||||| |||| | || |||||||| ||||||| | ||||||| || |||| ||||||| |
|
|
| T |
38506220 |
gcaacgactgtttgctttttgctcttccatgaaatgagatttccacccacaaaaatacaataactagaagtagaccgtctatcactcgcatctcctgccc |
38506121 |
T |
|
| Q |
156 |
aatctgcatctgaatatccaa |
176 |
Q |
| |
|
|||| ||||||||||| |||| |
|
|
| T |
38506120 |
aatcggcatctgaatacccaa |
38506100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 17726744 - 17726673
Alignment:
| Q |
46 |
acttgaccttgcaacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaata |
117 |
Q |
| |
|
|||||| || ||||| ||| ||||||| ||||||||||||||||| || || ||||| || ||||||||||| |
|
|
| T |
17726744 |
acttgatctagcaacgacattttgcttcttacttttccatgaaatcaaattgcctccaatgagaacacaata |
17726673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 549
Target Start/End: Original strand, 34768807 - 34768949
Alignment:
| Q |
407 |
agcttcacattggggtccataggagtatcaactggtttacaatcaaacatccctgtctcttccaaaatatcaagaacatattttctctaagaaatagtaa |
506 |
Q |
| |
|
||||||||||| || ||||||||||| || ||| |||| ||||| | | |||||||| || ||||||||||| |||||||| ||| ||| |||| || |
|
|
| T |
34768807 |
agcttcacattaggatccataggagtgtcgactagtttgcaatctataagacctgtctcctctaaaatatcaagggcatattttatctgagagatagcaa |
34768906 |
T |
|
| Q |
507 |
tgccttcttgggactgagctacttcaatcccaagaaaataacg |
549 |
Q |
| |
|
||||| | || ||||| || |||||||||||||| ||||| |
|
|
| T |
34768907 |
tgcctgactttgattgagccacctcaatcccaagaaagtaacg |
34768949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 9974 - 9848
Alignment:
| Q |
57 |
caacaacagtttgctttttacttttccatgaaattaagtttcctcccattagaacacaataacctaaagtagatcttctatcattcacatcacctgccca |
156 |
Q |
| |
|
||||||||||||||||||| || ||||||| || || ||||| || || | ||||||||||||| | ||||||| ||||||| | ||| ||||| || |
|
|
| T |
9974 |
caacaacagtttgctttttgctattccatgtgatcaaatttccaccaatgaaaacacaataacctgatgtagatcatctatcactagtatctcctgctca |
9875 |
T |
|
| Q |
157 |
atctgcatctgaatatccaataatatt |
183 |
Q |
| |
|
||| | |||||||||||||| ||||| |
|
|
| T |
9874 |
atcagagtctgaatatccaatgatatt |
9848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 648
Target Start/End: Complemental strand, 35209380 - 35209316
Alignment:
| Q |
584 |
aataaatgctgctttaggtctttaatgccttcctgatcattaccagtaattacaatgtcatctac |
648 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| ||||||||||| | ||| ||||| |||||||| |
|
|
| T |
35209380 |
aataaatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctac |
35209316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 527 - 573
Target Start/End: Original strand, 36298 - 36344
Alignment:
| Q |
527 |
acttcaatcccaagaaaataacgcaatcgacctaaatcttttgtttg |
573 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
36298 |
acttcaattccaaaaaaataatgcaaccgacctaaatcttttgtttg |
36344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University