View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_high_34 (Length: 238)
Name: NF19495_high_34
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31478883 - 31478656
Alignment:
| Q |
1 |
atttaaattacattttttaaattataaacttgtaattacaatactccttgaaaccttttaaaacataccttttataattttaaccataccaaagaaagtt |
100 |
Q |
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| T |
31478883 |
atttaaattatatttttaaaattataaacttgtaattacaatactccttgaaaccttttaaaacataccttttataattttaaccataccaaagaaagtt |
31478784 |
T |
|
| Q |
101 |
tctgctttatataaaagttttagaaaattaggtgcatctgtatgaagtcttaaaatcaattatatctaagcttaaacaaataagctctgtttaattgaat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
31478783 |
tctgctttatataaaagttttagaaaattagttgcatctgtatgaagtcttaaaatcaattatatctaagcttaaa-aaacaagctatgtttaattgaat |
31478685 |
T |
|
| Q |
201 |
gggaaaatttctcattgtaacatgcacca |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31478684 |
gggaaaatttctcattgtaacatgcacca |
31478656 |
T |
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