View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_high_4 (Length: 707)
Name: NF19495_high_4
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 361 - 692
Target Start/End: Complemental strand, 8244392 - 8244060
Alignment:
| Q |
361 |
aaacagtcatgcacaaattttgctcattttttaactgaggaacaaaatagtactctacaatggtttcatttgaggccatagtta-cctggattggtctac |
459 |
Q |
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| T |
8244392 |
aaacagtcatgcacaaattttgctcattttttaactgaggaacaaaatagtactctacaatggtttcatttgaggccatagttaacctggattggtctac |
8244293 |
T |
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| Q |
460 |
ttggtcattaggtgaaaattttagccataagatatttagcatcattctttgataacagagaaaaactaacttctgtttgatttcatagttcagtcgtacc |
559 |
Q |
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| T |
8244292 |
ttggtcattaggtgaaaattttagccataagatatttaggatcattctttgataacagagaaaaactaacttctgtttgatttcatagttcagtcgtaca |
8244193 |
T |
|
| Q |
560 |
tgtaatttttagaatttgaagatgctcattctgtcaccattcatttgttcttgtcacttgctaggtaagcatattgtactggtttcaaattgtgattaca |
659 |
Q |
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| T |
8244192 |
tgtaatttttagaatttgaagatgctcattctgtcaccattcatttgttcttgtcacttgctaggtaagcatattgtactggtttcgaattgtgattaca |
8244093 |
T |
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| Q |
660 |
gttgctgttatggccactgcaataacacattct |
692 |
Q |
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| T |
8244092 |
gttgctgttatggccactgcaataacacattct |
8244060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 8244722 - 8244390
Alignment:
| Q |
1 |
tcatgcaggtgtttgcagaacttaaggaccttcctgagaaaattgcatctactggattggagtcaccaactctgctaataataggaaaagttgtcgagtt |
100 |
Q |
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| T |
8244722 |
tcatgcaggtgtttgcagaacttaaggaccttcctgagaaaattgcatctactggattggagtcaccaactctgctaataataggaaaagttgtcgagtt |
8244623 |
T |
|
| Q |
101 |
atcaccattttggccaatgcctacaaaacaagaatcatctttaatgcaagcatgatgaannnnnnngtgaaacattattactgtgaagatgaaggattac |
200 |
Q |
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| T |
8244622 |
atcaccattttggccaatgcctacgaaacaagaatcatctttaatgcaaacatgatgaattttt--gtgaaacattattactgtgaagatgaaggattac |
8244525 |
T |
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| Q |
201 |
ctttgcatacaaaagggttcaaggtcatgtaacttgagtgtattttcgtatgtttgagaaaatgaagattgtctgcacttgggttgcggtttgtattgaa |
300 |
Q |
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| T |
8244524 |
ctttgcatacaaaagggttcaaggtcatgtaacttgagtgtattttcgtatgtttgagaaaatgaagattgtctgcacttgggttgcggtttgtattgaa |
8244425 |
T |
|
| Q |
301 |
cttgatgggtttgcgcagaagtattttgaaacaaa |
335 |
Q |
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| T |
8244424 |
cttgatgggtttgcgcagaagtattttggaacaaa |
8244390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 8191047 - 8190902
Alignment:
| Q |
5 |
gcaggtgtttgcagaacttaaggaccttcctgagaaaattgcatctactggattggagtcaccaactctgctaataataggaaaagttg--------tcg |
96 |
Q |
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| T |
8191047 |
gcaggtgtttgcagaacttaaggactttcatgagaaaaatgcatctactggattggagtcaccaacgctgctaataataagaaaagttgttgagttatcg |
8190948 |
T |
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| Q |
97 |
agttatcaccattttggccaatgcctacaaaacaagaatcatcttt |
142 |
Q |
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| T |
8190947 |
agttatcaccattttggccaattcctacaaaacaagaatcatcttt |
8190902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 5e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 12833204 - 12833057
Alignment:
| Q |
1 |
tcatgcaggtgtttgcagaacttaaggaccttcctgagaaaattgcatctactggattggagtcaccaactctgctaataataggaaaagttgtcgagtt |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
12833204 |
tcatgtaggtgtttgcagaacttaaggaccttcctgagaaaattgtgtctactggattggagtcaccaacactgctaataataggaaaagttgttgagtt |
12833105 |
T |
|
| Q |
101 |
atcaccattttggccaatgcctacaaaacaagaatcatctttaatgca |
148 |
Q |
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| T |
12833104 |
atcaccattttggccaattcctacaaaacaagaatcatgtttaatgca |
12833057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 656
Target Start/End: Complemental strand, 12832682 - 12832600
Alignment:
| Q |
573 |
atttgaagatgctcattctgtcaccattcatttgttcttgtcacttgctaggtaagcatattgtactggtttcaaattgtgatt |
656 |
Q |
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| T |
12832682 |
atttggagatgctcatattgtgaccattcatgtgttctactcaattgctag-taagcataatttaatggtttcaaattgtgatt |
12832600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 363
Target Start/End: Complemental strand, 12832987 - 12832890
Alignment:
| Q |
272 |
tctgcacttgggttgcggtttgtattgaacttgatgggtttgcgcagaagtattttgaaacaa------attcagcatgttccagattggaaataaaa |
363 |
Q |
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| T |
12832987 |
tctgctcttggattgcggtttctattgaagttgtcgggtttgcacagaagtatttcggaacaaatttttattcaacatgttctagattggaaataaaa |
12832890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 12833019 - 12832991
Alignment:
| Q |
176 |
tattactgtgaagatgaaggattaccttt |
204 |
Q |
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| T |
12833019 |
tattactgtgaagatgaaggattaccttt |
12832991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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