View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_high_6 (Length: 645)
Name: NF19495_high_6
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 119 - 641
Target Start/End: Complemental strand, 1218017 - 1217495
Alignment:
| Q |
119 |
gtacatttgagagtgagagaggaaaaagagaggagattctgagtggtggaatttggcatgagaacaaaagaggaagtgctgtctttgtataccccacttg |
218 |
Q |
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| T |
1218017 |
gtacatttgagagtgagagaggaaaaagagaggagattctgagtggtggaatttggcatgagaacaaaagaggaagtgctgtctttgtataccccacttg |
1217918 |
T |
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| Q |
219 |
tgcatgaggaattattggggtttcacgtgcacatattgagaaaagaaaaacaagatgtcctgtgtttggattttggtgtaagtgggttttagagactttg |
318 |
Q |
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| T |
1217917 |
tgcatgaggaattattggggtttcacgtgcacatattgagaaaagaaaaacaagatgtcttgtgtttggattttggtgtaagtgggttttagagactttg |
1217818 |
T |
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| Q |
319 |
gatttttacatcatcttattggcctttcttaatccctcttagatatcaatgaataggactcaactacccttcaaatgtcacaactttccttgtcccatga |
418 |
Q |
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| T |
1217817 |
gatttttacatcatcttattggcctttcttaagccctcttagatatcaatgaataagactcaactacccttcaaatgtcacaactttccttgtcccatga |
1217718 |
T |
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| Q |
419 |
cccactcttacacttagacaatcaagcagtcaaatagttgacacctcaaagtcgttggatcaagatcagacactttacattataagtttgataaatatat |
518 |
Q |
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| T |
1217717 |
cccactcttacacttagataatcatgcagtcaaatagttgacacctcagagtcgttggatcaagatcagacactttacattataaatttgataaatatat |
1217618 |
T |
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| Q |
519 |
atgtccaataaggatcaaccgcttagattatcaactgcataaatgcatgatcccatgaaattcattttccaaatttcacatagaagattagatctcgagt |
618 |
Q |
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| T |
1217617 |
atgtccaataaggatcaaccgtttagattatcaactgcataaatgcatgaccgcatgaaattcattttccaaatttcacatagaagattagatctcgagt |
1217518 |
T |
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| Q |
619 |
cacaaaatattgtagtcgcccat |
641 |
Q |
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| T |
1217517 |
tacaaaatgttgtagtcgcccat |
1217495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 1218124 - 1218071
Alignment:
| Q |
12 |
caaaggaaagaaaaaatggcaacatagtagctatgttgaaagccatgaatttgt |
65 |
Q |
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| T |
1218124 |
caaaggaaagaaaaaatggcaacatagtagctatgttgaaagccatgaatttgt |
1218071 |
T |
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