View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_low_11 (Length: 409)
Name: NF19495_low_11
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 5391363 - 5390971
Alignment:
| Q |
1 |
acaaattattgtcaataaaatacgtcacaacatacacta---ttatataattagatgaactatatttttattcaggtgggtaagaaaaaaggaatgacat |
97 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391363 |
acaaattattgtcaataaaatacgtcacaacatacactactattatataattagatgaactatatttttattcaggtgggtaagaaaaaaggaatgacat |
5391264 |
T |
|
| Q |
98 |
ggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatga |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391263 |
ggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatga |
5391164 |
T |
|
| Q |
198 |
gggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgca |
297 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391163 |
gggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgca |
5391064 |
T |
|
| Q |
298 |
gtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggttt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391063 |
gtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggttt |
5390971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 63 - 390
Target Start/End: Complemental strand, 5400017 - 5399690
Alignment:
| Q |
63 |
ttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
162 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5400017 |
ttttattcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
5399918 |
T |
|
| Q |
163 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5399917 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatg |
5399818 |
T |
|
| Q |
263 |
ctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaaca |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399817 |
ctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaaca |
5399718 |
T |
|
| Q |
363 |
tttgtggaaggtgttagcagaacggttt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
5399717 |
tttgtggaaggtgttagcagaacggttt |
5399690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 390
Target Start/End: Complemental strand, 5394869 - 5394509
Alignment:
| Q |
30 |
acatacactattatataattagatgaactatatttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttgga |
129 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
5394869 |
acatacattattatataattaaatgaacaatatatttgttcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaccccatctttgga |
5394770 |
T |
|
| Q |
130 |
ttttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaag |
229 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5394769 |
ttttcaccttatagcatgatgaacgtcattggcacgctttgtgtttacgccgcaatttgcaagcatgagggtcttcctttaaggtttcctggctcaaaag |
5394670 |
T |
|
| Q |
230 |
ctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaa |
329 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
5394669 |
gtgcatgggagtgttattctactgcttcagatgctaatttaatagccgaacaacatatttggggtgcagcggatcctaacgcaaagaatgaagcattcaa |
5394570 |
T |
|
| Q |
330 |
ctgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggttt |
390 |
Q |
| |
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||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5394569 |
ttgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcagaacggttt |
5394509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 121 - 374
Target Start/End: Complemental strand, 3819103 - 3818850
Alignment:
| Q |
121 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctg |
220 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| || || ||||| | |
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|
| T |
3819103 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccag |
3819004 |
T |
|
| Q |
221 |
gctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatga |
320 |
Q |
| |
|
| | || || ||||| ||| | | ||||| ||||| |||| || | |||||||||||||||| ||||||||||||| |||| |||||||| |
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|
| T |
3819003 |
ggactaagttagcttgggagaattactacatggcttctgatgcagatttgattgctgaacaacatatttgggctgcagtggatccttatgctaagaatga |
3818904 |
T |
|
| Q |
321 |
agcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
374 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||||| || ||||||||||| |
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|
| T |
3818903 |
agcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggt |
3818850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 121 - 374
Target Start/End: Original strand, 47338774 - 47339027
Alignment:
| Q |
121 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctg |
220 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| || || ||||| | |
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|
| T |
47338774 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccag |
47338873 |
T |
|
| Q |
221 |
gctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatga |
320 |
Q |
| |
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| | || || ||||| ||| | | ||||| |||||| |||| || | || ||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
47338874 |
ggactaagttagcttgggagaattactacatggcttctgatgctgatttgattgctgagcaacatatttgggctgcagtggatccttatgctaagaatga |
47338973 |
T |
|
| Q |
321 |
agcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
374 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||||| || ||||||||||| |
|
|
| T |
47338974 |
agcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggt |
47339027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 362
Target Start/End: Original strand, 47347233 - 47347485
Alignment:
| Q |
110 |
gaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccatt |
209 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| || ||||||| ||| |||| || ||||||||||| ||||||||||||||||| || ||| |||| || |
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|
| T |
47347233 |
gacctcaagttatatttggattttcaccttatagtttgatgaatctcgttggtacactttgtgtttatgctgcaatttgcaagcacgaaggtgttccgtt |
47347332 |
T |
|
| Q |
210 |
aaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaat |
309 |
Q |
| |
|
| ||||| || |||| | || ||||| | |||||| ||||| ||||| |||| || | || ||||||||||||| |||||||||||| || |
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|
| T |
47347333 |
gaaatttcccggtacaaagggagcttgggagtcttattctgtggcttctgatgcggatttgattgcagagcaacatatttgggccgcagtggatccttat |
47347432 |
T |
|
| Q |
310 |
gcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaaca |
362 |
Q |
| |
|
|| ||||| ||||| || ||||| |||||||| |||||||| || |||||||| |
|
|
| T |
47347433 |
gctaagaacgaagcttttaactgtagcaatggtgatgtttttagatggaaaca |
47347485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 47349942 - 47350036
Alignment:
| Q |
280 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
374 |
Q |
| |
|
||||| ||||||| |||||||||| || |||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||||||||||| |
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|
| T |
47349942 |
caacacatttgggctgcagtggatacttatgctaagaatgaagcgttcaattgtagcaatggtgatgtttttaggtggaaacaattgtggaaggt |
47350036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 47349783 - 47349859
Alignment:
| Q |
121 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatga |
197 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47349783 |
atctttggattctcaccttacagtttgatgaatgttgttggcacgctttgcctttacgctgcaatttgcaagcatga |
47349859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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